Cmc05g0137141 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc05g0137141
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty1-copia retrotransposon protein
Location	CMiso1.1chr05: 20385616 .. 20386233 (-)
RNA-Seq Expression	Cmc05g0137141
Synteny	Cmc05g0137141

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGATCCTGAAAACCCCTCAATCGTTAGTGAAACACCTGTTTCTGAAACTGTTGATACTTCAAACCTAAGATGTAAATTAGAACTTAGGAGAAGTAAAAGACAGAGAACTGAGAAAAGTTTCGGTCCAAATTTCCTAAGTACTTTCATAGTGGAAAGGCGTGATGAAATTGACTGTAACTTCACAAACTTGTACTTAATAGATGAAGATCCTAAAACTTACCAAGAAGCGCTAAACTCTGTAGATTCAAGTATGTGGAAAGAGACCATTAAAAGTGAATTGGACTCACTGGTCATGAATCATACATGGGACCTAGTGGACCTCCCTATGGGAAACAAGCCAATTAGATGTAAGTGGATTTTCAAAAGAAAAACAAAACCAAATGGATCAATAGAAAGATACAAGGCTAGATTAGTGGTAGTAGGATATACCCAGAAACAAGGCATTAACTATTTTGACACATATTCCCCTGTAACTAAGATAACCACAATTAGGGCCTTGATTGCATTAGCCACAATACATAACCTTCTTATTCACCAAATGGACGTAAAAACAGCCTTTTTAAATGGTGACCTAGAAGAAGAAATTTATATGACACAACCAGAAAGCTTTTAA

mRNA sequence

ATGCATGATCCTGAAAACCCCTCAATCGTTAGTGAAACACCTGTTTCTGAAACTGTTGATACTTCAAACCTAAGATGTAAATTAGAACTTAGGAGAAGTAAAAGACAGAGAACTGAGAAAAGTTTCGGTCCAAATTTCCTAAGTACTTTCATAGTGGAAAGGCGTGATGAAATTGACTGTAACTTCACAAACTTGTACTTAATAGATGAAGATCCTAAAACTTACCAAGAAGCGCTAAACTCTGTAGATTCAAGTATGTGGAAAGAGACCATTAAAAGTGAATTGGACTCACTGGTCATGAATCATACATGGGACCTAGTGGACCTCCCTATGGGAAACAAGCCAATTAGATGTAAGTGGATTTTCAAAAGAAAAACAAAACCAAATGGATCAATAGAAAGATACAAGGCTAGATTAGTGGTAGTAGGATATACCCAGAAACAAGGCATTAACTATTTTGACACATATTCCCCTGTAACTAAGATAACCACAATTAGGGCCTTGATTGCATTAGCCACAATACATAACCTTCTTATTCACCAAATGGACGTAAAAACAGCCTTTTTAAATGGTGACCTAGAAGAAGAAATTTATATGACACAACCAGAAAGCTTTTAA

Coding sequence (CDS)

ATGCATGATCCTGAAAACCCCTCAATCGTTAGTGAAACACCTGTTTCTGAAACTGTTGATACTTCAAACCTAAGATGTAAATTAGAACTTAGGAGAAGTAAAAGACAGAGAACTGAGAAAAGTTTCGGTCCAAATTTCCTAAGTACTTTCATAGTGGAAAGGCGTGATGAAATTGACTGTAACTTCACAAACTTGTACTTAATAGATGAAGATCCTAAAACTTACCAAGAAGCGCTAAACTCTGTAGATTCAAGTATGTGGAAAGAGACCATTAAAAGTGAATTGGACTCACTGGTCATGAATCATACATGGGACCTAGTGGACCTCCCTATGGGAAACAAGCCAATTAGATGTAAGTGGATTTTCAAAAGAAAAACAAAACCAAATGGATCAATAGAAAGATACAAGGCTAGATTAGTGGTAGTAGGATATACCCAGAAACAAGGCATTAACTATTTTGACACATATTCCCCTGTAACTAAGATAACCACAATTAGGGCCTTGATTGCATTAGCCACAATACATAACCTTCTTATTCACCAAATGGACGTAAAAACAGCCTTTTTAAATGGTGACCTAGAAGAAGAAATTTATATGACACAACCAGAAAGCTTTTAA

Protein sequence

MHDPENPSIVSETPVSETVDTSNLRCKLELRRSKRQRTEKSFGPNFLSTFIVERRDEIDCNFTNLYLIDEDPKTYQEALNSVDSSMWKETIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQGINYFDTYSPVTKITTIRALIALATIHNLLIHQMDVKTAFLNGDLEEEIYMTQPESF

Homology

[Close]

BLAST of Cmc05g0137141 vs. NCBI nr
Match: TYK06518.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 372.1 bits (954), Expect = 3.1e-99
Identity = 185/205 (90.24%), Postives = 192/205 (93.66%), Query Frame = 0


Query: 1   MHDPENPSIVSETPVSETVDTSNLRCKLELRRSKRQRTEKSFGPNFLSTFIVERRDEIDC 60
           MHDPE   IVSE PVSETVDT NL C+LE RRSKRQRTEKSFGP+FLSTFIVERRDEIDC
Sbjct: 766 MHDPE---IVSEIPVSETVDTPNLSCELEPRRSKRQRTEKSFGPDFLSTFIVERRDEIDC 825

Query: 61  NFTNLYLIDEDPKTYQEALNSVDSSMWKETIKSELDSLVMNHTWDLVDLPMGNKPIRCKW 120
           NFTNL+LIDEDPKTYQEALNSVDS MWKE IKSELDSL MNHTW+LVDLPMGNKPIRCKW
Sbjct: 826 NFTNLFLIDEDPKTYQEALNSVDSRMWKEAIKSELDSLAMNHTWELVDLPMGNKPIRCKW 885

Query: 121 IFKRKTKPNGSIERYKARLVVVGYTQKQGINYFDTYSPVTKITTIRALIALATIHNLLIH 180
           IFKRKTKPNG IERYKARLVVVGYTQKQG++YFDTYSPVTKITTIRALIALA IHNLLIH
Sbjct: 886 IFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIH 945

Query: 181 QMDVKTAFLNGDLEEEIYMTQPESF 206
           QMDVKTAFLNG+LEEEIYMTQPE F
Sbjct: 946 QMDVKTAFLNGNLEEEIYMTQPEGF 967

[Close]

BLAST of Cmc05g0137141 vs. NCBI nr
Match: KAA0042080.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK18022.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 318.9 bits (816), Expect = 3.1e-83
Identity = 158/168 (94.05%), Postives = 161/168 (95.83%), Query Frame = 0


Query: 1   MHDPENPSIVSETPVSETVDTSNLRCKLELRRSKRQRTEKSFGPNFLSTFIVERRDEIDC 60
           MHDPENPSIVSE PVSETVDTSNLRC+LELRRSKRQRTEKSFG +FLSTFIVERRDEID 
Sbjct: 496 MHDPENPSIVSEIPVSETVDTSNLRCELELRRSKRQRTEKSFGQDFLSTFIVERRDEIDR 555

Query: 61  NFTNLYLIDEDPKTYQEALNSVDSSMWKETIKSELDSLVMNHTWDLVDLPMGNKPIRCKW 120
           NFTNLYLIDEDPKTYQEALNSVD SMWKE I SELDSLVMNHTWDLVDLPM NKPIRCKW
Sbjct: 556 NFTNLYLIDEDPKTYQEALNSVDLSMWKEAINSELDSLVMNHTWDLVDLPMENKPIRCKW 615

Query: 121 IFKRKTKPNGSIERYKARLVVVGYTQKQGINYFDTYSPVTKITTIRAL 169
           IFKRKTKPNGSIERYKARLVVVGYTQKQGI+YFDTYSPVTKITTIRAL
Sbjct: 616 IFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRAL 663

[Close]

BLAST of Cmc05g0137141 vs. NCBI nr
Match: KAA0038001.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 295.8 bits (756), Expect = 2.8e-76
Identity = 144/159 (90.57%), Postives = 151/159 (94.97%), Query Frame = 0


Query: 1   MHDPENPSIVSETPVSETVDTSNLRCKLELRRSKRQRTEKSFGPNFLSTFIVERRDEIDC 60
           MHDPEN SIVSET VSE V+TSNLRC+LELRRSKRQRTEKSF P+FLSTFIVERRDEID 
Sbjct: 494 MHDPENTSIVSETHVSEIVNTSNLRCELELRRSKRQRTEKSFSPDFLSTFIVERRDEIDF 553

Query: 61  NFTNLYLIDEDPKTYQEALNSVDSSMWKETIKSELDSLVMNHTWDLVDLPMGNKPIRCKW 120
           NFTNLYLIDEDPKTYQE LNSV+ SMWKE IKSELDSLVMNHTWDLVDLPMGNKPIRC+W
Sbjct: 554 NFTNLYLIDEDPKTYQETLNSVELSMWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCRW 613

Query: 121 IFKRKTKPNGSIERYKARLVVVGYTQKQGINYFDTYSPV 160
           IFKRKTKPNGS+ERYKARLVVVGYTQKQGI+YFDTYSPV
Sbjct: 614 IFKRKTKPNGSMERYKARLVVVGYTQKQGIDYFDTYSPV 652

[Close]

BLAST of Cmc05g0137141 vs. NCBI nr
Match: KAA0036643.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 295.8 bits (756), Expect = 2.8e-76
Identity = 146/166 (87.95%), Postives = 153/166 (92.17%), Query Frame = 0


Query: 1   MHDPENPSIVSETPVSETVDTSNLRCKLELRRSKRQRTEKSFGPNFLSTFIVERRDEIDC 60
           MHDPE   IVSE PVSE VDT NL C+LE RRSKRQRTEKSFGP+FLSTFIVERRDEIDC
Sbjct: 766 MHDPE---IVSEIPVSEIVDTPNLSCELEPRRSKRQRTEKSFGPDFLSTFIVERRDEIDC 825

Query: 61  NFTNLYLIDEDPKTYQEALNSVDSSMWKETIKSELDSLVMNHTWDLVDLPMGNKPIRCKW 120
           NFTNL+LI+ED KTYQEALNSVDS MWKE IKSELDSL MNHTW+LVDLPMGNKPIRCKW
Sbjct: 826 NFTNLFLINEDSKTYQEALNSVDSRMWKEAIKSELDSLAMNHTWELVDLPMGNKPIRCKW 885

Query: 121 IFKRKTKPNGSIERYKARLVVVGYTQKQGINYFDTYSPVTKITTIR 167
           IFKRKTKPNG IERYKARLVVVGYTQKQG++YFDTYSPVTKITTIR
Sbjct: 886 IFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIR 928

[Close]

BLAST of Cmc05g0137141 vs. NCBI nr
Match: TYJ97996.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 285.8 bits (730), Expect = 2.9e-73
Identity = 138/145 (95.17%), Postives = 142/145 (97.93%), Query Frame = 0


Query: 1   MHDPENPSIVSETPVSETVDTSNLRCKLELRRSKRQRTEKSFGPNFLSTFIVERRDEIDC 60
           MHDPENPSIVSETPVSETV+TSNLRC+LEL RSKRQRTEKSFGP+FLSTFIVERRDEIDC
Sbjct: 350 MHDPENPSIVSETPVSETVNTSNLRCELELMRSKRQRTEKSFGPDFLSTFIVERRDEIDC 409

Query: 61  NFTNLYLIDEDPKTYQEALNSVDSSMWKETIKSELDSLVMNHTWDLVDLPMGNKPIRCKW 120
           NFTNLYLIDEDPKTYQEALNSV+SSMWKE IKSELDSLVMNHTWDLVDLPMGNKPIRCKW
Sbjct: 410 NFTNLYLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKW 469

Query: 121 IFKRKTKPNGSIERYKARLVVVGYT 146
           IFKRKTKPNGSIERYK RLVVVGYT
Sbjct: 470 IFKRKTKPNGSIERYKTRLVVVGYT 494

[Close]

BLAST of Cmc05g0137141 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 6.9e-33
Identity = 74/176 (42.05%), Postives = 112/176 (63.64%), Query Frame = 0


Query: 30  LRRSKRQRTEKSFGPNFLSTFIVERRDEIDCNFTNLYLIDEDPKTYQEALNSVDSSMWKE 89
           LRRS+R R E    P+     I +               D +P++ +E L+  + +   +
Sbjct: 784 LRRSERPRVESRRYPSTEYVLISD---------------DREPESLKEVLSHPEKNQLMK 843

Query: 90  TIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARLVVVGYTQKQG 149
            ++ E++SL  N T+ LV+LP G +P++CKW+FK K   +  + RYKARLVV G+ QK+G
Sbjct: 844 AMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKG 903

Query: 150 INYFDTYSPVTKITTIRALIALATIHNLLIHQMDVKTAFLNGDLEEEIYMTQPESF 206
           I++ + +SPV K+T+IR +++LA   +L + Q+DVKTAFL+GDLEEEIYM QPE F
Sbjct: 904 IDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGF 944

[Close]

BLAST of Cmc05g0137141 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 121.3 bits (303), Expect = 1.3e-26
Identity = 69/184 (37.50%), Postives = 106/184 (57.61%), Query Frame = 0


Query: 21   TSNLRCKLELRRSKRQRTEKSFGPNFLSTFIVERRDEIDCNFTNLYLIDED-PKTYQEAL 80
            T N   ++  RRS+R +T+     N       E  + ++    N + I  D P ++ E  
Sbjct: 846  TKNDGIEIINRRSERLKTKPQISYN-------EEDNSLNKVVLNAHTIFNDVPNSFDEIQ 905

Query: 81   NSVDSSMWKETIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPNGSIERYKARL 140
               D S W+E I +EL++  +N+TW +   P     +  +W+F  K    G+  RYKARL
Sbjct: 906  YRDDKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARL 965

Query: 141  VVVGYTQKQGINYFDTYSPVTKITTIRALIALATIHNLLIHQMDVKTAFLNGDLEEEIYM 200
            V  G+TQK  I+Y +T++PV +I++ R +++L   +NL +HQMDVKTAFLNG L+EEIYM
Sbjct: 966  VARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYM 1022

Query: 201  TQPE 204
              P+
Sbjct: 1026 RLPQ 1022

[Close]

BLAST of Cmc05g0137141 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 2.1e-26
Identity = 58/138 (42.03%), Postives = 90/138 (65.22%), Query Frame = 0


Query: 69   DEDPKTYQEALNSVDSSMWKETIKSELDSLVMNHTWDLVDLPMGNKPI-RCKWIFKRKTK 128
            + +P+T   A+ ++    W++ + SE+++ + NHTWDLV  P  +  I  C+WIF +K  
Sbjct: 936  NSEPRT---AIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFN 995

Query: 129  PNGSIERYKARLVVVGYTQKQGINYFDTYSPVTKITTIRALIALATIHNLLIHQMDVKTA 188
             +GS+ RYKARLV  GY Q+ G++Y +T+SPV K T+IR ++ +A   +  I Q+DV  A
Sbjct: 996  SDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNA 1055

Query: 189  FLNGDLEEEIYMTQPESF 206
            FL G L +E+YM+QP  F
Sbjct: 1056 FLQGTLTDEVYMSQPPGF 1070

[Close]

BLAST of Cmc05g0137141 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 3.7e-26
Identity = 57/138 (41.30%), Postives = 89/138 (64.49%), Query Frame = 0


Query: 69   DEDPKTYQEALNSVDSSMWKETIKSELDSLVMNHTWDLVDLPMGNKPI-RCKWIFKRKTK 128
            + +P+T   A+ ++    W+  + SE+++ + NHTWDLV  P  +  I  C+WIF +K  
Sbjct: 953  ESEPRT---AIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYN 1012

Query: 129  PNGSIERYKARLVVVGYTQKQGINYFDTYSPVTKITTIRALIALATIHNLLIHQMDVKTA 188
             +GS+ RYKARLV  GY Q+ G++Y +T+SPV K T+IR ++ +A   +  I Q+DV  A
Sbjct: 1013 SDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNA 1072

Query: 189  FLNGDLEEEIYMTQPESF 206
            FL G L +++YM+QP  F
Sbjct: 1073 FLQGTLTDDVYMSQPPGF 1087

[Close]

BLAST of Cmc05g0137141 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 5.8e-16
Identity = 42/105 (40.00%), Postives = 65/105 (61.90%), Query Frame = 0


Query: 68  IDEDPKTYQEALNSVDSSMWKETIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTK 127
           I ++PK+   AL       W + ++ ELD+L  N TW LV  P+    + CKW+FK K  
Sbjct: 24  IKKEPKSVIFALKDPG---WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLH 83

Query: 128 PNGSIERYKARLVVVGYTQKQGINYFDTYSPVTKITTIRALIALA 173
            +G+++R KARLV  G+ Q++GI + +TYSPV +  TIR ++ +A
Sbjct: 84  SDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

[Close]

BLAST of Cmc05g0137141 vs. ExPASy TrEMBL
Match: A0A5D3C5T2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00500 PE=4 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 1.5e-99
Identity = 185/205 (90.24%), Postives = 192/205 (93.66%), Query Frame = 0


Query: 1   MHDPENPSIVSETPVSETVDTSNLRCKLELRRSKRQRTEKSFGPNFLSTFIVERRDEIDC 60
           MHDPE   IVSE PVSETVDT NL C+LE RRSKRQRTEKSFGP+FLSTFIVERRDEIDC
Sbjct: 766 MHDPE---IVSEIPVSETVDTPNLSCELEPRRSKRQRTEKSFGPDFLSTFIVERRDEIDC 825

Query: 61  NFTNLYLIDEDPKTYQEALNSVDSSMWKETIKSELDSLVMNHTWDLVDLPMGNKPIRCKW 120
           NFTNL+LIDEDPKTYQEALNSVDS MWKE IKSELDSL MNHTW+LVDLPMGNKPIRCKW
Sbjct: 826 NFTNLFLIDEDPKTYQEALNSVDSRMWKEAIKSELDSLAMNHTWELVDLPMGNKPIRCKW 885

Query: 121 IFKRKTKPNGSIERYKARLVVVGYTQKQGINYFDTYSPVTKITTIRALIALATIHNLLIH 180
           IFKRKTKPNG IERYKARLVVVGYTQKQG++YFDTYSPVTKITTIRALIALA IHNLLIH
Sbjct: 886 IFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIH 945

Query: 181 QMDVKTAFLNGDLEEEIYMTQPESF 206
           QMDVKTAFLNG+LEEEIYMTQPE F
Sbjct: 946 QMDVKTAFLNGNLEEEIYMTQPEGF 967

[Close]

BLAST of Cmc05g0137141 vs. ExPASy TrEMBL
Match: A0A5A7TFH9 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003410 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.5e-83
Identity = 158/168 (94.05%), Postives = 161/168 (95.83%), Query Frame = 0


Query: 1   MHDPENPSIVSETPVSETVDTSNLRCKLELRRSKRQRTEKSFGPNFLSTFIVERRDEIDC 60
           MHDPENPSIVSE PVSETVDTSNLRC+LELRRSKRQRTEKSFG +FLSTFIVERRDEID 
Sbjct: 496 MHDPENPSIVSEIPVSETVDTSNLRCELELRRSKRQRTEKSFGQDFLSTFIVERRDEIDR 555

Query: 61  NFTNLYLIDEDPKTYQEALNSVDSSMWKETIKSELDSLVMNHTWDLVDLPMGNKPIRCKW 120
           NFTNLYLIDEDPKTYQEALNSVD SMWKE I SELDSLVMNHTWDLVDLPM NKPIRCKW
Sbjct: 556 NFTNLYLIDEDPKTYQEALNSVDLSMWKEAINSELDSLVMNHTWDLVDLPMENKPIRCKW 615

Query: 121 IFKRKTKPNGSIERYKARLVVVGYTQKQGINYFDTYSPVTKITTIRAL 169
           IFKRKTKPNGSIERYKARLVVVGYTQKQGI+YFDTYSPVTKITTIRAL
Sbjct: 616 IFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRAL 663

[Close]

BLAST of Cmc05g0137141 vs. ExPASy TrEMBL
Match: A0A5A7T8N6 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G001890 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.4e-76
Identity = 144/159 (90.57%), Postives = 151/159 (94.97%), Query Frame = 0


Query: 1   MHDPENPSIVSETPVSETVDTSNLRCKLELRRSKRQRTEKSFGPNFLSTFIVERRDEIDC 60
           MHDPEN SIVSET VSE V+TSNLRC+LELRRSKRQRTEKSF P+FLSTFIVERRDEID 
Sbjct: 494 MHDPENTSIVSETHVSEIVNTSNLRCELELRRSKRQRTEKSFSPDFLSTFIVERRDEIDF 553

Query: 61  NFTNLYLIDEDPKTYQEALNSVDSSMWKETIKSELDSLVMNHTWDLVDLPMGNKPIRCKW 120
           NFTNLYLIDEDPKTYQE LNSV+ SMWKE IKSELDSLVMNHTWDLVDLPMGNKPIRC+W
Sbjct: 554 NFTNLYLIDEDPKTYQETLNSVELSMWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCRW 613

Query: 121 IFKRKTKPNGSIERYKARLVVVGYTQKQGINYFDTYSPV 160
           IFKRKTKPNGS+ERYKARLVVVGYTQKQGI+YFDTYSPV
Sbjct: 614 IFKRKTKPNGSMERYKARLVVVGYTQKQGIDYFDTYSPV 652

[Close]

BLAST of Cmc05g0137141 vs. ExPASy TrEMBL
Match: A0A5A7T166 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3921G00120 PE=4 SV=1)

HSP 1 Score: 295.8 bits (756), Expect = 1.4e-76
Identity = 146/166 (87.95%), Postives = 153/166 (92.17%), Query Frame = 0


Query: 1   MHDPENPSIVSETPVSETVDTSNLRCKLELRRSKRQRTEKSFGPNFLSTFIVERRDEIDC 60
           MHDPE   IVSE PVSE VDT NL C+LE RRSKRQRTEKSFGP+FLSTFIVERRDEIDC
Sbjct: 766 MHDPE---IVSEIPVSEIVDTPNLSCELEPRRSKRQRTEKSFGPDFLSTFIVERRDEIDC 825

Query: 61  NFTNLYLIDEDPKTYQEALNSVDSSMWKETIKSELDSLVMNHTWDLVDLPMGNKPIRCKW 120
           NFTNL+LI+ED KTYQEALNSVDS MWKE IKSELDSL MNHTW+LVDLPMGNKPIRCKW
Sbjct: 826 NFTNLFLINEDSKTYQEALNSVDSRMWKEAIKSELDSLAMNHTWELVDLPMGNKPIRCKW 885

Query: 121 IFKRKTKPNGSIERYKARLVVVGYTQKQGINYFDTYSPVTKITTIR 167
           IFKRKTKPNG IERYKARLVVVGYTQKQG++YFDTYSPVTKITTIR
Sbjct: 886 IFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIR 928

[Close]

BLAST of Cmc05g0137141 vs. ExPASy TrEMBL
Match: A0A5D3BFX4 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00190 PE=4 SV=1)

HSP 1 Score: 285.8 bits (730), Expect = 1.4e-73
Identity = 138/145 (95.17%), Postives = 142/145 (97.93%), Query Frame = 0


Query: 1   MHDPENPSIVSETPVSETVDTSNLRCKLELRRSKRQRTEKSFGPNFLSTFIVERRDEIDC 60
           MHDPENPSIVSETPVSETV+TSNLRC+LEL RSKRQRTEKSFGP+FLSTFIVERRDEIDC
Sbjct: 350 MHDPENPSIVSETPVSETVNTSNLRCELELMRSKRQRTEKSFGPDFLSTFIVERRDEIDC 409

Query: 61  NFTNLYLIDEDPKTYQEALNSVDSSMWKETIKSELDSLVMNHTWDLVDLPMGNKPIRCKW 120
           NFTNLYLIDEDPKTYQEALNSV+SSMWKE IKSELDSLVMNHTWDLVDLPMGNKPIRCKW
Sbjct: 410 NFTNLYLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKW 469

Query: 121 IFKRKTKPNGSIERYKARLVVVGYT 146
           IFKRKTKPNGSIERYK RLVVVGYT
Sbjct: 470 IFKRKTKPNGSIERYKTRLVVVGYT 494

[Close]

BLAST of Cmc05g0137141 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 142.5 bits (358), Expect = 3.7e-34
Identity = 61/136 (44.85%), Postives = 95/136 (69.85%), Query Frame = 0


Query: 70  EDPKTYQEALNSVDSSMWKETIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTKPN 129
           ++P TY EA   +   +W   +  E+ ++   HTW++  LP   KPI CKW++K K   +
Sbjct: 84  KEPSTYNEAKEFL---VWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSD 143

Query: 130 GSIERYKARLVVVGYTQKQGINYFDTYSPVTKITTIRALIALATIHNLLIHQMDVKTAFL 189
           G+IERYKARLV  GYTQ++GI++ +T+SPV K+T+++ ++A++ I+N  +HQ+D+  AFL
Sbjct: 144 GTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFL 203

Query: 190 NGDLEEEIYMTQPESF 206
           NGDL+EEIYM  P  +
Sbjct: 204 NGDLDEEIYMKLPPGY 216

[Close]

BLAST of Cmc05g0137141 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 85.9 bits (211), Expect = 4.2e-17
Identity = 42/105 (40.00%), Postives = 65/105 (61.90%), Query Frame = 0


Query: 68  IDEDPKTYQEALNSVDSSMWKETIKSELDSLVMNHTWDLVDLPMGNKPIRCKWIFKRKTK 127
           I ++PK+   AL       W + ++ ELD+L  N TW LV  P+    + CKW+FK K  
Sbjct: 24  IKKEPKSVIFALKDPG---WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLH 83

Query: 128 PNGSIERYKARLVVVGYTQKQGINYFDTYSPVTKITTIRALIALA 173
            +G+++R KARLV  G+ Q++GI + +TYSPV +  TIR ++ +A
Sbjct: 84  SDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVA 125

The following BLAST results are available for this feature:

BLAST of Cmc05g0137141 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK06518.1	3.1e-99	90.24	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0042080.1	3.1e-83	94.05	ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK18022.1 ty1-cop...	[more]
KAA0038001.1	2.8e-76	90.57	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0036643.1	2.8e-76	87.95	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYJ97996.1	2.9e-73	95.17	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc05g0137141 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	6.9e-33	42.05	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.3e-26	37.50	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	2.1e-26	42.03	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	3.7e-26	41.30	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P92520	5.8e-16	40.00	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc05g0137141 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C5T2	1.5e-99	90.24	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TFH9	1.5e-83	94.05	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7T8N6	1.4e-76	90.57	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7T166	1.4e-76	87.95	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BFX4	1.4e-73	95.17	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Cmc05g0137141 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	3.7e-34	44.85	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	4.2e-17	40.00	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 101..204 e-value: 2.0E-34 score: 119.3
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 70..203
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 101..199

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc05g0137141.1	Cmc05g0137141.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008270	zinc ion binding