Cmc05g0136841 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc05g0136841
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag-pol polyprotein
Location	CMiso1.1chr05: 20128809 .. 20129495 (-)
RNA-Seq Expression	Cmc05g0136841
Synteny	Cmc05g0136841

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTAGGTACTGCAGTCAATCATAAATTGTACAGAAGCATGATTGGAAGCCTTCTATATTTAACAACAAGCAAACTAGATATTGCCTATGTTGTGGGAATATGTGTTTGGTATCAGTCAGATCCACGTACCTCTCATTTAAATGCAGTTAAACGAATAATAAAATATGTTCACGGAACAACTGATTTCGGGATTCTGTACTCCTACGATACATCCTCTAAACTGGATGGATATTGTAATGCAGACTGGGCAGGTTCTGCTGATGATCGGAAAAGCACTTCTAGTGGATGTTTCTTTCTTGGAAATAATCTTGTTTCATGGTTCAGTAAGAAACAAAATTGTGTATCTCTATCAACAACAGAAGCGGAGTATATAGCTGCAGGAATTGAGTATACTCAAATGAGATGGATGAAAAATATGTTGAATGAATATGAGATTATCAAAGATGTTATGACCTTATATTGTGATAATATGAGTGCCATAGATATATTGAAAAATCCAGGGCAGCATAGTCGCACTGAGCACATTGATATATGGCATCACTTTATTAGAGAACTCATTGAAAATAAGGTTATTACATTACAACACATTCGCTTGAACTCACGATTGGCAGACATTTTCACTAAACCCCTTGATGCAACCATGTTTGAGCATATACGTGCCTGTTTAGGAGTTTGTAAAATATAG

mRNA sequence

ATGGTAGGTACTGCAGTCAATCATAAATTGTACAGAAGCATGATTGGAAGCCTTCTATATTTAACAACAAGCAAACTAGATATTGCCTATGTTGTGGGAATATGTGTTTGGTATCAGTCAGATCCACGTACCTCTCATTTAAATGCAGTTAAACGAATAATAAAATATGTTCACGGAACAACTGATTTCGGGATTCTGTACTCCTACGATACATCCTCTAAACTGGATGGATATTGTAATGCAGACTGGGCAGGTTCTGCTGATGATCGGAAAAGCACTTCTAGTGGATGTTTCTTTCTTGGAAATAATCTTGTTTCATGGTTCAGTAAGAAACAAAATTGTGTATCTCTATCAACAACAGAAGCGGAGTATATAGCTGCAGGAATTGAGTATACTCAAATGAGATGGATGAAAAATATGTTGAATGAATATGAGATTATCAAAGATGTTATGACCTTATATTGTGATAATATGAGTGCCATAGATATATTGAAAAATCCAGGGCAGCATAGTCGCACTGAGCACATTGATATATGGCATCACTTTATTAGAGAACTCATTGAAAATAAGGTTATTACATTACAACACATTCGCTTGAACTCACGATTGGCAGACATTTTCACTAAACCCCTTGATGCAACCATGTTTGAGCATATACGTGCCTGTTTAGGAGTTTGTAAAATATAG

Coding sequence (CDS)

ATGGTAGGTACTGCAGTCAATCATAAATTGTACAGAAGCATGATTGGAAGCCTTCTATATTTAACAACAAGCAAACTAGATATTGCCTATGTTGTGGGAATATGTGTTTGGTATCAGTCAGATCCACGTACCTCTCATTTAAATGCAGTTAAACGAATAATAAAATATGTTCACGGAACAACTGATTTCGGGATTCTGTACTCCTACGATACATCCTCTAAACTGGATGGATATTGTAATGCAGACTGGGCAGGTTCTGCTGATGATCGGAAAAGCACTTCTAGTGGATGTTTCTTTCTTGGAAATAATCTTGTTTCATGGTTCAGTAAGAAACAAAATTGTGTATCTCTATCAACAACAGAAGCGGAGTATATAGCTGCAGGAATTGAGTATACTCAAATGAGATGGATGAAAAATATGTTGAATGAATATGAGATTATCAAAGATGTTATGACCTTATATTGTGATAATATGAGTGCCATAGATATATTGAAAAATCCAGGGCAGCATAGTCGCACTGAGCACATTGATATATGGCATCACTTTATTAGAGAACTCATTGAAAATAAGGTTATTACATTACAACACATTCGCTTGAACTCACGATTGGCAGACATTTTCACTAAACCCCTTGATGCAACCATGTTTGAGCATATACGTGCCTGTTTAGGAGTTTGTAAAATATAG

Protein sequence

MVGTAVNHKLYRSMIGSLLYLTTSKLDIAYVVGICVWYQSDPRTSHLNAVKRIIKYVHGTTDFGILYSYDTSSKLDGYCNADWAGSADDRKSTSSGCFFLGNNLVSWFSKKQNCVSLSTTEAEYIAAGIEYTQMRWMKNMLNEYEIIKDVMTLYCDNMSAIDILKNPGQHSRTEHIDIWHHFIRELIENKVITLQHIRLNSRLADIFTKPLDATMFEHIRACLGVCKI

Homology

[Close]

BLAST of Cmc05g0136841 vs. NCBI nr
Match: KAA0055610.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK24458.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 348.6 bits (893), Expect = 4.1e-92
Identity = 166/221 (75.11%), Postives = 191/221 (86.43%), Query Frame = 0


Query: 7   NHKLYRSMIGSLLYLTTSKLDIAYVVGICVWYQSDPRTSHLNAVKRIIKYVHGTTDFGIL 66
           +HKLYRS++GSLLYLT S+ +IAYVVGIC  YQ+DPR +HL AVKRI+KYVHGT+DFG++
Sbjct: 62  DHKLYRSIVGSLLYLTASRPNIAYVVGICAHYQADPRITHLEAVKRILKYVHGTSDFGMM 121

Query: 67  YSYDTSSKLDGYCNADWAGSADDRKSTSSGCFFLGNNLVSWFSKKQNCVSLSTTEAEYIA 126
           YSYDT+  L GYC+ADWAGSADDRKSTS GCFFLGNNL+SW SKKQNCVSLSTTEAEYIA
Sbjct: 122 YSYDTTPFLVGYCDADWAGSADDRKSTSGGCFFLGNNLISWLSKKQNCVSLSTTEAEYIA 181

Query: 127 AGIEYTQMRWMKNMLNEYEIIKDVMTLYCDNMSAIDILKNPGQHSRTEHIDIWHHFIREL 186
           AG   TQ+ WMKNML+EY   +D MTLYCDN SAIDI KNP QHSRT+HIDI HHFIREL
Sbjct: 182 AGSGCTQLIWMKNMLHEYGFDQDTMTLYCDNTSAIDISKNPVQHSRTKHIDIRHHFIREL 241

Query: 187 IENKVITLQHIRLNSRLADIFTKPLDATMFEHIRACLGVCK 228
           +E+KVI L HIR N +L DIFTKPLDA+ FE++RA LGVC+
Sbjct: 242 VEDKVIKLDHIRSNLQLVDIFTKPLDASSFEYLRAGLGVCR 282

[Close]

BLAST of Cmc05g0136841 vs. NCBI nr
Match: TYK21311.1 (F5J5.1 [Cucumis melo var. makuwa])

HSP 1 Score: 341.3 bits (874), Expect = 6.6e-90
Identity = 170/222 (76.58%), Postives = 187/222 (84.23%), Query Frame = 0


Query: 4   TAVNHKLYRSMIGSLLYLTTSKLDIAYVVGICVWYQSDPRTSHLNAVKRIIKYVHGTTDF 63
           TA++HKLYRS+I SLLYLT S+ DIAY VGIC  +QSDPRTSHL  VKRIIKYVHGTTDF
Sbjct: 332 TAIDHKLYRSIIRSLLYLTASRPDIAYAVGICAQFQSDPRTSHLTTVKRIIKYVHGTTDF 391

Query: 64  GILYSYDTSSKLDGYCNADWAGSADDRKSTSSGCFFLGNNLVSWFSKKQNCVSLSTTEAE 123
           GILYSYDT+S L GYC+ADW GSADDR+STSSGCFFLG     WFSKKQ CVSLST E E
Sbjct: 392 GILYSYDTTSILVGYCDADWVGSADDRESTSSGCFFLG----IWFSKKQICVSLSTVEVE 451

Query: 124 YIAAGIEYTQMRWMKNMLNEYEIIKDVMTLYCDNMSAIDILKNPGQHSRTEHIDIWHHFI 183
           YIA G   TQ+ WMKNML+EY I +DVMTLYCDNMSAIDI K P QHS+T+HIDI HHFI
Sbjct: 452 YIATGSGCTQLIWMKNMLHEYGITQDVMTLYCDNMSAIDISKYPVQHSQTKHIDIRHHFI 511

Query: 184 RELIENKVITLQHIRLNSRLADIFTKPLDATMFEHIRACLGV 226
           RELIENK+ITLQH+R  S+LADIFTKPLD T FEH+RA LGV
Sbjct: 512 RELIENKIITLQHVRSYSQLADIFTKPLDETTFEHLRAGLGV 549

[Close]

BLAST of Cmc05g0136841 vs. NCBI nr
Match: KAA0034956.1 (F5J5.1 [Cucumis melo var. makuwa])

HSP 1 Score: 339.7 bits (870), Expect = 1.9e-89
Identity = 169/221 (76.47%), Postives = 186/221 (84.16%), Query Frame = 0


Query: 4   TAVNHKLYRSMIGSLLYLTTSKLDIAYVVGICVWYQSDPRTSHLNAVKRIIKYVHGTTDF 63
           TA++HKLYRS+I SLLYLT S+ DIAY VGIC  +QSDPRTSHL  VKRIIKYVHGTTDF
Sbjct: 332 TAIDHKLYRSIIRSLLYLTASRPDIAYAVGICAQFQSDPRTSHLTTVKRIIKYVHGTTDF 391

Query: 64  GILYSYDTSSKLDGYCNADWAGSADDRKSTSSGCFFLGNNLVSWFSKKQNCVSLSTTEAE 123
           GILYSYDT+S L GYC+ADW GSADDR+STSSGCFFLG     WFSKKQ CVSLST E E
Sbjct: 392 GILYSYDTTSILVGYCDADWVGSADDRESTSSGCFFLG----IWFSKKQICVSLSTVEVE 451

Query: 124 YIAAGIEYTQMRWMKNMLNEYEIIKDVMTLYCDNMSAIDILKNPGQHSRTEHIDIWHHFI 183
           YIA G   TQ+ WMKNML+EY I +DVMTLYCDNMSAIDI K P QHS+T+HIDI HHFI
Sbjct: 452 YIATGSGCTQLIWMKNMLHEYGITQDVMTLYCDNMSAIDISKYPVQHSQTKHIDIRHHFI 511

Query: 184 RELIENKVITLQHIRLNSRLADIFTKPLDATMFEHIRACLG 225
           RELIENK+ITLQH+R  S+LADIFTKPLD T FEH+RA LG
Sbjct: 512 RELIENKIITLQHVRSYSQLADIFTKPLDETTFEHLRAGLG 548

[Close]

BLAST of Cmc05g0136841 vs. NCBI nr
Match: AAO73529.1 (gag-pol polyprotein [Glycine max])

HSP 1 Score: 328.6 bits (841), Expect = 4.4e-86
Identity = 153/224 (68.30%), Postives = 186/224 (83.04%), Query Frame = 0


Query: 3    GTAVNHKLYRSMIGSLLYLTTSKLDIAYVVGICVWYQSDPRTSHLNAVKRIIKYVHGTTD 62
            GT+V+  LYRSMIGSLLYLT S+ DI Y VG+C  YQ++P+ SHLN VKRI+KYV+GT+D
Sbjct: 1349 GTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSD 1408

Query: 63   FGILYSYDTSSKLDGYCNADWAGSADDRKSTSSGCFFLGNNLVSWFSKKQNCVSLSTTEA 122
            +GI+Y + + S L GYC+ADWAGSADDRKSTS GCF+LGNNL+SWFSKKQNCVSLST EA
Sbjct: 1409 YGIMYCHCSGSMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEA 1468

Query: 123  EYIAAGIEYTQMRWMKNMLNEYEIIKDVMTLYCDNMSAIDILKNPGQHSRTEHIDIWHHF 182
            EYIAAG   +Q+ WMK ML EY + +DVMTLYCDNMSAI+I KNP QHSRT+HIDI HH+
Sbjct: 1469 EYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHY 1528

Query: 183  IRELIENKVITLQHIRLNSRLADIFTKPLDATMFEHIRACLGVC 227
            IREL+++KVITL+H+    ++ADIFTK LDA  FE +R  LG+C
Sbjct: 1529 IRELVDDKVITLEHVDTEEQIADIFTKALDAKQFEKLRGKLGIC 1572

[Close]

BLAST of Cmc05g0136841 vs. NCBI nr
Match: AAO73523.1 (gag-pol polyprotein [Glycine max])

HSP 1 Score: 328.2 bits (840), Expect = 5.7e-86
Identity = 153/224 (68.30%), Postives = 187/224 (83.48%), Query Frame = 0


Query: 3    GTAVNHKLYRSMIGSLLYLTTSKLDIAYVVGICVWYQSDPRTSHLNAVKRIIKYVHGTTD 62
            GT+V+ K YRSMIGSLLYLT S+ DI Y VG+C  YQ++P+ SHLN VKRI+KYV+GT+D
Sbjct: 1348 GTSVDQKPYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSD 1407

Query: 63   FGILYSYDTSSKLDGYCNADWAGSADDRKSTSSGCFFLGNNLVSWFSKKQNCVSLSTTEA 122
            +GI+Y + +SS L GYC+ADWAGSADDRKSTS GCF+LGNNL+SWFSKKQNCVSLST EA
Sbjct: 1408 YGIMYCHCSSSMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEA 1467

Query: 123  EYIAAGIEYTQMRWMKNMLNEYEIIKDVMTLYCDNMSAIDILKNPGQHSRTEHIDIWHHF 182
            EYIAAG   +Q+ WMK ML EY + +DVMTLYCDNMSAI+I KNP QHSRT+HIDI HH+
Sbjct: 1468 EYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHY 1527

Query: 183  IRELIENKVITLQHIRLNSRLADIFTKPLDATMFEHIRACLGVC 227
            IR+L+++KVITL+H+    ++ADIFTK LDA  FE +R  LG+C
Sbjct: 1528 IRDLVDDKVITLKHVDTEEQIADIFTKALDANQFEKLRGKLGIC 1571

[Close]

BLAST of Cmc05g0136841 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.2e-38
Identity = 83/219 (37.90%), Postives = 129/219 (58.90%), Query Frame = 0


Query: 11   YRSMIGSLLYLTTSKLDIAYVVGICVWYQSDPRTSHLNAVKRIIKYVHGTTDFGILYSYD 70
            YR ++GSL YL  ++ DI+Y V     +   P   HL A+KRI++Y+ GT + GI     
Sbjct: 1245 YRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKG 1304

Query: 71   TSSKLDGYCNADWAGSADDRKSTSSGCFFLGNNLVSWFSKKQNCVSLSTTEAEYIAAGIE 130
             +  L  Y +ADWAG  DD  ST+    +LG++ +SW SKKQ  V  S+TEAEY +    
Sbjct: 1305 NTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANT 1364

Query: 131  YTQMRWMKNMLNEYEI-IKDVMTLYCDNMSAIDILKNPGQHSRTEHIDIWHHFIRELIEN 190
             ++M+W+ ++L E  I +     +YCDN+ A  +  NP  HSR +HI I +HFIR  +++
Sbjct: 1365 SSEMQWICSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQS 1424

Query: 191  KVITLQHIRLNSRLADIFTKPLDATMFEHIRACLGVCKI 229
              + + H+  + +LAD  TKPL  T F++  + +GV ++
Sbjct: 1425 GALRVVHVSTHDQLADTLTKPLSRTAFQNFASKIGVTRV 1463

[Close]

BLAST of Cmc05g0136841 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.2e-38
Identity = 81/219 (36.99%), Postives = 127/219 (57.99%), Query Frame = 0


Query: 11   YRSMIGSLLYLTTSKLDIAYVVGICVWYQSDPRTSHLNAVKRIIKYVHGTTDFGILYSYD 70
            YR ++GSL YL  ++ D++Y V     Y   P   H NA+KR+++Y+ GT D GI     
Sbjct: 1228 YRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKG 1287

Query: 71   TSSKLDGYCNADWAGSADDRKSTSSGCFFLGNNLVSWFSKKQNCVSLSTTEAEYIAAGIE 130
             +  L  Y +ADWAG  DD  ST+    +LG++ +SW SKKQ  V  S+TEAEY +    
Sbjct: 1288 NTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANT 1347

Query: 131  YTQMRWMKNMLNEYEI-IKDVMTLYCDNMSAIDILKNPGQHSRTEHIDIWHHFIRELIEN 190
             ++++W+ ++L E  I +     +YCDN+ A  +  NP  HSR +HI + +HFIR  +++
Sbjct: 1348 SSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQS 1407

Query: 191  KVITLQHIRLNSRLADIFTKPLDATMFEHIRACLGVCKI 229
              + + H+  + +LAD  TKPL    F++    +GV K+
Sbjct: 1408 GALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGVIKV 1446

[Close]

BLAST of Cmc05g0136841 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.3e-37
Identity = 84/216 (38.89%), Postives = 129/216 (59.72%), Query Frame = 0


Query: 11   YRSMIGSLLY-LTTSKLDIAYVVGICVWYQSDPRTSHLNAVKRIIKYVHGTTDFGILYSY 70
            Y S +GSL+Y +  ++ DIA+ VG+   +  +P   H  AVK I++Y+ GTT   + +  
Sbjct: 1111 YSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFG- 1170

Query: 71   DTSSKLDGYCNADWAGSADDRKSTSSGCFFLGNNLVSWFSKKQNCVSLSTTEAEYIAAGI 130
             +   L GY +AD AG  D+RKS++   F      +SW SK Q CV+LSTTEAEYIAA  
Sbjct: 1171 GSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATE 1230

Query: 131  EYTQMRWMKNMLNEYEIIKDVMTLYCDNMSAIDILKNPGQHSRTEHIDIWHHFIRELIEN 190
               +M W+K  L E  + +    +YCD+ SAID+ KN   H+RT+HID+ +H+IRE++++
Sbjct: 1231 TGKEMIWLKRFLQELGLHQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDD 1290

Query: 191  KVITLQHIRLNSRLADIFTKPLDATMFEHIRACLGV 226
            + + +  I  N   AD+ TK +    FE  +  +G+
Sbjct: 1291 ESLKVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325

[Close]

BLAST of Cmc05g0136841 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 153.3 bits (386), Expect = 3.3e-36
Identity = 85/219 (38.81%), Postives = 133/219 (60.73%), Query Frame = 0


Query: 12   RSMIGSLLY-LTTSKLDIAYVVGICVWYQSDPRTSHLNAVKRIIKYVHGTTDFGILYSYD 71
            RS+IG L+Y +  ++ D+   V I   Y S   +     +KR+++Y+ GT D  +++  +
Sbjct: 1182 RSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKN 1241

Query: 72   TS--SKLDGYCNADWAGSADDRKSTSSGCFFLGN-NLVSWFSKKQNCVSLSTTEAEYIAA 131
             +  +K+ GY ++DWAGS  DRKST+   F + + NL+ W +K+QN V+ S+TEAEY+A 
Sbjct: 1242 LAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMAL 1301

Query: 132  GIEYTQMRWMKNMLNEYEI-IKDVMTLYCDNMSAIDILKNPGQHSRTEHIDIWHHFIREL 191
                 +  W+K +L    I +++ + +Y DN   I I  NP  H R +HIDI +HF RE 
Sbjct: 1302 FEAVREALWLKFLLTSINIKLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQ 1361

Query: 192  IENKVITLQHIRLNSRLADIFTKPLDATMFEHIRACLGV 226
            ++N VI L++I   ++LADIFTKPL A  F  +R  LG+
Sbjct: 1362 VQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400

[Close]

BLAST of Cmc05g0136841 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.9e-21
Identity = 46/126 (36.51%), Postives = 77/126 (61.11%), Query Frame = 0


Query: 11  YRSMIGSLLYLTTSKLDIAYVVGICVWYQSDPRTSHLNAVKRIIKYVHGTTDFGILYSYD 70
           +RS++G+L YLT ++ DI+Y V I      +P  +  + +KR+++YV GT   G+    +
Sbjct: 100 FRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKN 159

Query: 71  TSSKLDGYCNADWAGSADDRKSTSSGCFFLGNNLVSWFSKKQNCVSLSTTEAEYIAAGIE 130
           +   +  +C++DWAG    R+ST+  C FLG N++SW +K+Q  VS S+TE EY A  + 
Sbjct: 160 SKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALT 219

Query: 131 YTQMRW 137
             ++ W
Sbjct: 220 AAELTW 225

[Close]

BLAST of Cmc05g0136841 vs. ExPASy TrEMBL
Match: A0A5D3DLL1 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold717G00150 PE=4 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 2.0e-92
Identity = 166/221 (75.11%), Postives = 191/221 (86.43%), Query Frame = 0


Query: 7   NHKLYRSMIGSLLYLTTSKLDIAYVVGICVWYQSDPRTSHLNAVKRIIKYVHGTTDFGIL 66
           +HKLYRS++GSLLYLT S+ +IAYVVGIC  YQ+DPR +HL AVKRI+KYVHGT+DFG++
Sbjct: 62  DHKLYRSIVGSLLYLTASRPNIAYVVGICAHYQADPRITHLEAVKRILKYVHGTSDFGMM 121

Query: 67  YSYDTSSKLDGYCNADWAGSADDRKSTSSGCFFLGNNLVSWFSKKQNCVSLSTTEAEYIA 126
           YSYDT+  L GYC+ADWAGSADDRKSTS GCFFLGNNL+SW SKKQNCVSLSTTEAEYIA
Sbjct: 122 YSYDTTPFLVGYCDADWAGSADDRKSTSGGCFFLGNNLISWLSKKQNCVSLSTTEAEYIA 181

Query: 127 AGIEYTQMRWMKNMLNEYEIIKDVMTLYCDNMSAIDILKNPGQHSRTEHIDIWHHFIREL 186
           AG   TQ+ WMKNML+EY   +D MTLYCDN SAIDI KNP QHSRT+HIDI HHFIREL
Sbjct: 182 AGSGCTQLIWMKNMLHEYGFDQDTMTLYCDNTSAIDISKNPVQHSRTKHIDIRHHFIREL 241

Query: 187 IENKVITLQHIRLNSRLADIFTKPLDATMFEHIRACLGVCK 228
           +E+KVI L HIR N +L DIFTKPLDA+ FE++RA LGVC+
Sbjct: 242 VEDKVIKLDHIRSNLQLVDIFTKPLDASSFEYLRAGLGVCR 282

[Close]

BLAST of Cmc05g0136841 vs. ExPASy TrEMBL
Match: A0A5D3DCC3 (F5J5.1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1199G00200 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 3.2e-90
Identity = 170/222 (76.58%), Postives = 187/222 (84.23%), Query Frame = 0


Query: 4   TAVNHKLYRSMIGSLLYLTTSKLDIAYVVGICVWYQSDPRTSHLNAVKRIIKYVHGTTDF 63
           TA++HKLYRS+I SLLYLT S+ DIAY VGIC  +QSDPRTSHL  VKRIIKYVHGTTDF
Sbjct: 332 TAIDHKLYRSIIRSLLYLTASRPDIAYAVGICAQFQSDPRTSHLTTVKRIIKYVHGTTDF 391

Query: 64  GILYSYDTSSKLDGYCNADWAGSADDRKSTSSGCFFLGNNLVSWFSKKQNCVSLSTTEAE 123
           GILYSYDT+S L GYC+ADW GSADDR+STSSGCFFLG     WFSKKQ CVSLST E E
Sbjct: 392 GILYSYDTTSILVGYCDADWVGSADDRESTSSGCFFLG----IWFSKKQICVSLSTVEVE 451

Query: 124 YIAAGIEYTQMRWMKNMLNEYEIIKDVMTLYCDNMSAIDILKNPGQHSRTEHIDIWHHFI 183
           YIA G   TQ+ WMKNML+EY I +DVMTLYCDNMSAIDI K P QHS+T+HIDI HHFI
Sbjct: 452 YIATGSGCTQLIWMKNMLHEYGITQDVMTLYCDNMSAIDISKYPVQHSQTKHIDIRHHFI 511

Query: 184 RELIENKVITLQHIRLNSRLADIFTKPLDATMFEHIRACLGV 226
           RELIENK+ITLQH+R  S+LADIFTKPLD T FEH+RA LGV
Sbjct: 512 RELIENKIITLQHVRSYSQLADIFTKPLDETTFEHLRAGLGV 549

[Close]

BLAST of Cmc05g0136841 vs. ExPASy TrEMBL
Match: A0A5A7SYI8 (F5J5.1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold434G00200 PE=4 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 9.2e-90
Identity = 169/221 (76.47%), Postives = 186/221 (84.16%), Query Frame = 0


Query: 4   TAVNHKLYRSMIGSLLYLTTSKLDIAYVVGICVWYQSDPRTSHLNAVKRIIKYVHGTTDF 63
           TA++HKLYRS+I SLLYLT S+ DIAY VGIC  +QSDPRTSHL  VKRIIKYVHGTTDF
Sbjct: 332 TAIDHKLYRSIIRSLLYLTASRPDIAYAVGICAQFQSDPRTSHLTTVKRIIKYVHGTTDF 391

Query: 64  GILYSYDTSSKLDGYCNADWAGSADDRKSTSSGCFFLGNNLVSWFSKKQNCVSLSTTEAE 123
           GILYSYDT+S L GYC+ADW GSADDR+STSSGCFFLG     WFSKKQ CVSLST E E
Sbjct: 392 GILYSYDTTSILVGYCDADWVGSADDRESTSSGCFFLG----IWFSKKQICVSLSTVEVE 451

Query: 124 YIAAGIEYTQMRWMKNMLNEYEIIKDVMTLYCDNMSAIDILKNPGQHSRTEHIDIWHHFI 183
           YIA G   TQ+ WMKNML+EY I +DVMTLYCDNMSAIDI K P QHS+T+HIDI HHFI
Sbjct: 452 YIATGSGCTQLIWMKNMLHEYGITQDVMTLYCDNMSAIDISKYPVQHSQTKHIDIRHHFI 511

Query: 184 RELIENKVITLQHIRLNSRLADIFTKPLDATMFEHIRACLG 225
           RELIENK+ITLQH+R  S+LADIFTKPLD T FEH+RA LG
Sbjct: 512 RELIENKIITLQHVRSYSQLADIFTKPLDETTFEHLRAGLG 548

[Close]

BLAST of Cmc05g0136841 vs. ExPASy TrEMBL
Match: Q84VH6 (Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 2.1e-86
Identity = 153/224 (68.30%), Postives = 186/224 (83.04%), Query Frame = 0


Query: 3    GTAVNHKLYRSMIGSLLYLTTSKLDIAYVVGICVWYQSDPRTSHLNAVKRIIKYVHGTTD 62
            GT+V+  LYRSMIGSLLYLT S+ DI Y VG+C  YQ++P+ SHLN VKRI+KYV+GT+D
Sbjct: 1349 GTSVDQSLYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSD 1408

Query: 63   FGILYSYDTSSKLDGYCNADWAGSADDRKSTSSGCFFLGNNLVSWFSKKQNCVSLSTTEA 122
            +GI+Y + + S L GYC+ADWAGSADDRKSTS GCF+LGNNL+SWFSKKQNCVSLST EA
Sbjct: 1409 YGIMYCHCSGSMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEA 1468

Query: 123  EYIAAGIEYTQMRWMKNMLNEYEIIKDVMTLYCDNMSAIDILKNPGQHSRTEHIDIWHHF 182
            EYIAAG   +Q+ WMK ML EY + +DVMTLYCDNMSAI+I KNP QHSRT+HIDI HH+
Sbjct: 1469 EYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHY 1528

Query: 183  IRELIENKVITLQHIRLNSRLADIFTKPLDATMFEHIRACLGVC 227
            IREL+++KVITL+H+    ++ADIFTK LDA  FE +R  LG+C
Sbjct: 1529 IRELVDDKVITLEHVDTEEQIADIFTKALDAKQFEKLRGKLGIC 1572

[Close]

BLAST of Cmc05g0136841 vs. ExPASy TrEMBL
Match: Q84VI2 (Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1)

HSP 1 Score: 328.2 bits (840), Expect = 2.8e-86
Identity = 153/224 (68.30%), Postives = 187/224 (83.48%), Query Frame = 0


Query: 3    GTAVNHKLYRSMIGSLLYLTTSKLDIAYVVGICVWYQSDPRTSHLNAVKRIIKYVHGTTD 62
            GT+V+ K YRSMIGSLLYLT S+ DI Y VG+C  YQ++P+ SHLN VKRI+KYV+GT+D
Sbjct: 1348 GTSVDQKPYRSMIGSLLYLTASRPDITYAVGVCARYQANPKISHLNQVKRILKYVNGTSD 1407

Query: 63   FGILYSYDTSSKLDGYCNADWAGSADDRKSTSSGCFFLGNNLVSWFSKKQNCVSLSTTEA 122
            +GI+Y + +SS L GYC+ADWAGSADDRKSTS GCF+LGNNL+SWFSKKQNCVSLST EA
Sbjct: 1408 YGIMYCHCSSSMLVGYCDADWAGSADDRKSTSGGCFYLGNNLISWFSKKQNCVSLSTAEA 1467

Query: 123  EYIAAGIEYTQMRWMKNMLNEYEIIKDVMTLYCDNMSAIDILKNPGQHSRTEHIDIWHHF 182
            EYIAAG   +Q+ WMK ML EY + +DVMTLYCDNMSAI+I KNP QHSRT+HIDI HH+
Sbjct: 1468 EYIAAGSSCSQLVWMKQMLKEYNVEQDVMTLYCDNMSAINISKNPVQHSRTKHIDIRHHY 1527

Query: 183  IRELIENKVITLQHIRLNSRLADIFTKPLDATMFEHIRACLGVC 227
            IR+L+++KVITL+H+    ++ADIFTK LDA  FE +R  LG+C
Sbjct: 1528 IRDLVDDKVITLKHVDTEEQIADIFTKALDANQFEKLRGKLGIC 1571

[Close]

BLAST of Cmc05g0136841 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 134.0 bits (336), Expect = 1.5e-31
Identity = 70/184 (38.04%), Postives = 102/184 (55.43%), Query Frame = 0


Query: 3   GTAVNHKLYRSMIGSLLYLTTSKLDIAYVVGICVWYQSDPRTSHLNAVKRIIKYVHGTTD 62
           G  V+ K YR +IG L+YL  ++LDI++ V     +   PR +H  AV +I+ Y+ GT  
Sbjct: 370 GDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVG 429

Query: 63  FGILYSYDTSSKLDGYCNADWAGSADDRKSTSSGCFFLGNNLVSWFSKKQNCVSLSTTEA 122
            G+ YS     +L  + +A +    D R+ST+  C FLG +L+SW SKKQ  VS S+ EA
Sbjct: 430 QGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEA 489

Query: 123 EYIAAGIEYTQMRWMKNMLNEYEI-IKDVMTLYCDNMSAIDILKNPGQHSRTEHIDIWHH 182
           EY A      +M W+     E ++ +     L+CDN +AI I  N   H RT+HI+   H
Sbjct: 490 EYRALSFATDEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCH 549

Query: 183 FIRE 186
            +RE
Sbjct: 550 SVRE 553

[Close]

BLAST of Cmc05g0136841 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 103.2 bits (256), Expect = 2.8e-22
Identity = 46/126 (36.51%), Postives = 77/126 (61.11%), Query Frame = 0


Query: 11  YRSMIGSLLYLTTSKLDIAYVVGICVWYQSDPRTSHLNAVKRIIKYVHGTTDFGILYSYD 70
           +RS++G+L YLT ++ DI+Y V I      +P  +  + +KR+++YV GT   G+    +
Sbjct: 100 FRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKN 159

Query: 71  TSSKLDGYCNADWAGSADDRKSTSSGCFFLGNNLVSWFSKKQNCVSLSTTEAEYIAAGIE 130
           +   +  +C++DWAG    R+ST+  C FLG N++SW +K+Q  VS S+TE EY A  + 
Sbjct: 160 SKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALT 219

Query: 131 YTQMRW 137
             ++ W
Sbjct: 220 AAELTW 225

[Close]

BLAST of Cmc05g0136841 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 56.6 bits (135), Expect = 3.0e-08
Identity = 28/88 (31.82%), Postives = 48/88 (54.55%), Query Frame = 0


Query: 19  LYLTTSKLDIAYVVGICVWYQSDPRTSHLNAVKRIIKYVHGTTDFGILYSYDTSSKLDGY 78
           +YLT ++ D+ + V     + S  RT+ + AV +++ YV GT   G+ YS  +  +L  +
Sbjct: 1   MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60

Query: 79  CNADWAGSADDRKSTSSGC-----FFLG 102
            ++DWA   D R+S +  C     +FLG
Sbjct: 61  ADSDWASCPDTRRSVTGFCSLVPLWFLG 88

The following BLAST results are available for this feature:

BLAST of Cmc05g0136841 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0055610.1	4.1e-92	75.11	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK24458.1 gag-pol polyprotein [...	[more]
TYK21311.1	6.6e-90	76.58	F5J5.1 [Cucumis melo var. makuwa]	[more]
KAA0034956.1	1.9e-89	76.47	F5J5.1 [Cucumis melo var. makuwa]	[more]
AAO73529.1	4.4e-86	68.30	gag-pol polyprotein [Glycine max]	[more]
AAO73523.1	5.7e-86	68.30	gag-pol polyprotein [Glycine max]	[more]

BLAST of Cmc05g0136841 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	1.2e-38	37.90	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	1.2e-38	36.99	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	1.3e-37	38.89	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	3.3e-36	38.81	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P92519	3.9e-21	36.51	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc05g0136841 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DLL1	2.0e-92	75.11	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold717G...	[more]
A0A5D3DCC3	3.2e-90	76.58	F5J5.1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1199G00200 PE=4 S...	[more]
A0A5A7SYI8	9.2e-90	76.47	F5J5.1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold434G00200 PE=4 SV...	[more]
Q84VH6	2.1e-86	68.30	Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1	[more]
Q84VI2	2.8e-86	68.30	Gag-pol polyprotein OS=Glycine max OX=3847 GN=gag-pol PE=4 SV=1	[more]

BLAST of Cmc05g0136841 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.5e-31	38.04	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	2.8e-22	36.51	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	3.0e-08	31.82	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF355	CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8	coord: 91..227
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 91..227
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 77..211 e-value: 9.54679E-69 score: 205.395

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc05g0136841.1	Cmc05g0136841.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding