Cmc05g0136391 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc05g0136391
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	DNA primase
Location	CMiso1.1chr05: 19455236 .. 19457525 (-)
RNA-Seq Expression	Cmc05g0136391
Synteny	Cmc05g0136391

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCAGTTTAACACTCTCTTTCCAGTTTTCTCATGATTTCTGATGATTTAATTATTAACTTTTGCATAATTTGGTTTCAAGTAATCAGATTTATTTCAGTAACAAACATTTTGCATGGTTGTTTTGAGTATTATTTGTTTGAAAGAGTTTTATTTTTTTGCGAGATTCATTTGTCTTTCTCACACACTTCCAACTTTTATACTTCAGCCTGCAAAGAGACATGCATATGCTGGCAATAACGTATTTACTCCAGTGGAAAGGGAGTTGGTTTTTGATATTGTAAGCAGATTGTTTTTCATGATGGTCACTATATTCTAATTCTATTTAAAAGTTAATTACTAGGTTCTTTTCGTTGAGAAATTAATTGGAAAATTTCCTCCATATTCAGGATATGACTGGTAGCCGTGGTGTTCATTGTTGGGCCTGTGATGGAAAAGCTAAAAGGTAAAGCTAGTAATCAAATTGTTGAATTTGTAGTAAATTATATTATCTGTAAAGGTCTAAAATTCCCACCATCACTGCTACAGGTTGTCTAATGAACAGCGAGCTGCCATTGCTGAATATTTCCATTTATATCAGGTTATACTGTGGTGTTATAAAATATTGGCCTATTGGGGAATTTTAGCTGTCTTTAGCTATGGAGCTGAATATGGTTGATGTGCAGGGTAATGAAAATAGTAGCAAGAAAATTTCTCTAACGGGTCCAGTTCTTCATCCATTTCTCGCGTAGTTCTTCATCCATTTCTCGGGTAAGTGGTGCTTAATATTTAAATGTGATGATTCAAGTCTCATTTTTTTTCTCATCCAACTTATGTAATTTTTTCAGTAGATCGTACACCAAAGTTCTCAAGGATAGCTTTGAATCACAATTGCTTTGTAGTCAAAAAGATTTTTTCAACTGAGGAGAGATATGAGAAAATATTAGATATGATTCCTGATGAATGTAAGTGAATATATATATATTTGTCTCAGGTAAGTACTGTCAGTATGATAAGCTTTAGATACTAACAGAGTTACTCTTGCAGCGGCCATTACCTCAGACCTACGGGGAAGGTGGCAAGATAATAGGCGATCCTCTAAAATTGATGTTAACTCATTAAGATGGGAGCAACTGAAAAATCTATTGCAATCAGGGAAACATAAGGTATAATCAACATCTATTCACGTACTTGCAAGAAGTTACATCTTGGAAATAGTTTATTGATGAGGAGTTTGTGTTGTTATGTTGCAGTTTGGAACCATTTTTGTCCAGTGCAATAATTACCAAAAATAGAAAACAGTGTTTGTGGGCTCGTTTTTTGTTGGCTCATGTTGCAAGCCTACATTTGTCCCTTTTATATACTATCATCTTTTTGAATCAGAACTTGGTTCTTTCATAGTGTTTGTGCACATACAAATATTTATTTCAACATTTATCATGTGCAATCCAAGTAGTTGTAATTGTTATTTTCAGTTGCCGCTTCTCCATCATCTAGCTTCCTCTTTCCGCTTCTTCATTTCTTTCCAGCCATGCGTTGTGTGGCTGTCAATAAGATGTGTCTTGGTGCAACATTTTCTTTTTTATCTTTTAGTCTTATATGTGAGGATTTGGTTGCGTAGAGTTCAACTGTGCTACATTTAGTCAATAATTATGATGTTTTTCTCTGTTCAGGCTCAAGGAATGCGTAGGCATGTTGAAGAGATTGTTTTCTCTTTTACCTACCCTAGGCTTGATTTGGAGGTATTTGTATTACCTGACTTTCACTCAATATTCTTAACTAGATTTTCTGCTCCATTTATTGTAATTAGATCAATCTGTACTTGCATTTAGCTTTGTTACATTTTGGATCTCTAATTTAGCTTTGTTACCCTTGGATGTATCAATAGTTCGATATCATTTGTATTCCAATGGAATTGATCGAAGTTACAAGGTAAGGTTCTGACATGGTGAATATTTAAACTCAGAGAATGTTACTAGTAGAATGAAAAATACAGTGGATGAAAAAGATGAACTGAACTGAATGTAAACCTTATATTCTTATCTTGATGTGTAGAGTCGTACTCTAAAATTTCATTTTGTTTTCTTACTAGGTTTTGCAAGAATCCATTTGAGCAGTGAAGTCATATTTGCGGCAATTGATTGATATATAGGTCTTTTTTAGGTTTGGTAGAAAATTTTGGTTCAAATGTACTTATTTAAGTATCTTGGTACCAAAGCATGTATGTTCATTCTATCATACTACAAACCTTTACCAATAATTGTGTACACATACTACAAAGTATATATATTAAATCGTTCATGGTTTCTTTCCA

mRNA sequence

TCAGTTTAACACTCTCTTTCCAGTTTTCTCATGATTTCTGATGATTTAATTATTAACTTTTGCATAATTTGGTTTCAAGTAATCAGATTTATTTCAGTAACAAACATTTTGCATGGTTGTTTTGAGTATTATTTGTTTGAAAGAGTTTTATTTTTTTGCGAGATTCATTTGTCTTTCTCACACACTTCCAACTTTTATACTTCAGCCTGCAAAGAGACATGCATATGCTGGCAATAACGTATTTACTCCAGTGGAAAGGGAGTTGGTTTTTGATATTGATATGACTGGTAGCCGTGGTGTTCATTGTTGGGCCTGTGATGGAAAAGCTAAAAGGTTGTCTAATGAACAGCGAGCTGCCATTGCTGAATATTTCCATTTATATCAGGGTAATGAAAATAGTAGCAAGAAAATTTCTCTAACGGGTCCAGTTCTTCATCCATTTCTCGCGTAGTTCTTCATCCATTTCTCGGATCGTACACCAAAGTTCTCAAGGATAGCTTTGAATCACAATTGCTTTGTAGTCAAAAAGATTTTTTCAACTGAGGAGAGATATGAGAAAATATTAGATATGATTCCTGATGAATCGGCCATTACCTCAGACCTACGGGGAAGGTGGCAAGATAATAGGCGATCCTCTAAAATTGATGTTAACTCATTAAGATGGGAGCAACTGAAAAATCTATTGCAATCAGGGAAACATAAGGCTCAAGGAATGCGTAGGCATGTTGAAGAGATTGTTTTCTCTTTTACCTACCCTAGGCTTGATTTGGAGGTATTTGTATTACCTGACTTTCACTCAATATTCTTAACTAGATTTTCTGCTCCATTTATTGTAATTAGATCAATCTGTACTTGCATTTAGCTTTGTTACATTTTGGATCTCTAATTTAGCTTTGTTACCCTTGGATGTATCAATAGTTCGATATCATTTGTATTCCAATGGAATTGATCGAAGTTACAAGGTAAGGTTCTGACATGGTGAATATTTAAACTCAGAGAATGTTACTAGTAGAATGAAAAATACAGTGGATGAAAAAGATGAACTGAACTGAATGTAAACCTTATATTCTTATCTTGATGTGTAGAGTCGTACTCTAAAATTTCATTTTGTTTTCTTACTAGGTTTTGCAAGAATCCATTTGAGCAGTGAAGTCATATTTGCGGCAATTGATTGATATATAGGTCTTTTTTAGGTTTGGTAGAAAATTTTGGTTCAAATGTACTTATTTAAGTATCTTGGTACCAAAGCATGTATGTTCATTCTATCATACTACAAACCTTTACCAATAATTGTGTACACATACTACAAAGTATATATATTAAATCGTTCATGGTTTCTTTCCA

Coding sequence (CDS)

ATGGTTGTTTTGAGTATTATTTGTTTGAAAGAGTTTTATTTTTTTGCGAGATTCATTTGTCTTTCTCACACACTTCCAACTTTTATACTTCAGCCTGCAAAGAGACATGCATATGCTGGCAATAACGTATTTACTCCAGTGGAAAGGGAGTTGGTTTTTGATATTGATATGACTGGTAGCCGTGGTGTTCATTGTTGGGCCTGTGATGGAAAAGCTAAAAGGTTGTCTAATGAACAGCGAGCTGCCATTGCTGAATATTTCCATTTATATCAGGGTAATGAAAATAGTAGCAAGAAAATTTCTCTAACGGGTCCAGTTCTTCATCCATTTCTCGCGTAG

Protein sequence

MVVLSIICLKEFYFFARFICLSHTLPTFILQPAKRHAYAGNNVFTPVERELVFDIDMTGSRGVHCWACDGKAKRLSNEQRAAIAEYFHLYQGNENSSKKISLTGPVLHPFLA

Homology

[Close]

BLAST of Cmc05g0136391 vs. NCBI nr
Match: XP_008465561.2 (PREDICTED: DNA primase small subunit, partial [Cucumis melo])

HSP 1 Score: 176.4 bits (446), Expect = 1.4e-40
Identity = 91/146 (62.33%), Postives = 95/146 (65.07%), Query Frame = 0


Query: 14  FFARFICLSHTLPTFILQPAKRHAYAGNNVFTPVERELVFDIDMT--------------- 73
           F +RFICLSHTLPTF+LQPAKRHAYAG+NVFTPVERELVFDIDMT               
Sbjct: 1   FCSRFICLSHTLPTFLLQPAKRHAYAGDNVFTPVERELVFDIDMTDYDDVRYCCSGADVC 60

Query: 74  --------------------------------GSRGVHCWACDGKAKRLSNEQRAAIAEY 113
                                           G RGVHCW CDGKA+RLSNEQRAAIAEY
Sbjct: 61  LDCWPLMTAAIKVIDTTLRDDFGFNHILWVFSGRRGVHCWVCDGKARRLSNEQRAAIAEY 120

[Close]

BLAST of Cmc05g0136391 vs. NCBI nr
Match: XP_038889665.1 (DNA primase small subunit [Benincasa hispida])

HSP 1 Score: 149.1 bits (375), Expect = 2.3e-32
Identity = 77/134 (57.46%), Postives = 81/134 (60.45%), Query Frame = 0


Query: 26  PTFILQPAKRHAYAGNNVFTPVERELVFDIDMT--------------------------- 85
           P + + PAKRHAYAG+NVFTPVERELVFDIDMT                           
Sbjct: 110 PVYSVDPAKRHAYAGDNVFTPVERELVFDIDMTDYDDVRYCCSGAGVCLDCWPLMTAAIK 169

Query: 86  --------------------GSRGVHCWACDGKAKRLSNEQRAAIAEYFHLYQGNENSSK 113
                               G RGVHCW CDGKA+RLSNEQRAAIAEYFHLYQGNENS K
Sbjct: 170 VIDTTLRDDFGFNHILWVFSGRRGVHCWVCDGKARRLSNEQRAAIAEYFHLYQGNENSRK 229

[Close]

BLAST of Cmc05g0136391 vs. NCBI nr
Match: KAA0039338.1 (DNA primase, small subunit [Cucumis melo var. makuwa] >TYK00521.1 DNA primase, small subunit [Cucumis melo var. makuwa])

HSP 1 Score: 149.1 bits (375), Expect = 2.3e-32
Identity = 77/134 (57.46%), Postives = 81/134 (60.45%), Query Frame = 0


Query: 26  PTFILQPAKRHAYAGNNVFTPVERELVFDIDMT--------------------------- 85
           P + + PAKRHAYAG+NVFTPVERELVFDIDMT                           
Sbjct: 125 PVYSVDPAKRHAYAGDNVFTPVERELVFDIDMTDYDDVRYCCSGADVCLDCWPLMTAAIK 184

Query: 86  --------------------GSRGVHCWACDGKAKRLSNEQRAAIAEYFHLYQGNENSSK 113
                               G RGVHCW CDGKA+RLSNEQRAAIAEYFHLYQGNENS K
Sbjct: 185 VIDTTLRDDFGFNHILWVFSGRRGVHCWVCDGKARRLSNEQRAAIAEYFHLYQGNENSRK 244

[Close]

BLAST of Cmc05g0136391 vs. NCBI nr
Match: XP_022925368.1 (DNA primase small subunit [Cucurbita moschata])

HSP 1 Score: 146.7 bits (369), Expect = 1.2e-31
Identity = 76/134 (56.72%), Postives = 80/134 (59.70%), Query Frame = 0


Query: 26  PTFILQPAKRHAYAGNNVFTPVERELVFDIDMT--------------------------- 85
           P + + PAKRHAYAG NVFTPVERELVFDIDMT                           
Sbjct: 110 PVYSVDPAKRHAYAGANVFTPVERELVFDIDMTDYDDVRYCCSGADVCLDCWPLMTAAIK 169

Query: 86  --------------------GSRGVHCWACDGKAKRLSNEQRAAIAEYFHLYQGNENSSK 113
                               G RGVHCW CDGKA+RLSNEQRAAIA+YFHLYQGNENS K
Sbjct: 170 VIDTTLRDDFGFNHILWVFSGRRGVHCWVCDGKARRLSNEQRAAIADYFHLYQGNENSRK 229

[Close]

BLAST of Cmc05g0136391 vs. NCBI nr
Match: XP_022973496.1 (DNA primase small subunit [Cucurbita maxima])

HSP 1 Score: 146.7 bits (369), Expect = 1.2e-31
Identity = 76/134 (56.72%), Postives = 80/134 (59.70%), Query Frame = 0


Query: 26  PTFILQPAKRHAYAGNNVFTPVERELVFDIDMT--------------------------- 85
           P + + PAKRHAYAG NVFTPVERELVFDIDMT                           
Sbjct: 105 PVYSVDPAKRHAYAGANVFTPVERELVFDIDMTDYDDVRYCCSGADVCLDCWPLMTAAIK 164

Query: 86  --------------------GSRGVHCWACDGKAKRLSNEQRAAIAEYFHLYQGNENSSK 113
                               G RGVHCW CDGKA+RLSNEQRAAIA+YFHLYQGNENS K
Sbjct: 165 VIDTTLRDDFGFNHILWVFSGRRGVHCWVCDGKARRLSNEQRAAIADYFHLYQGNENSRK 224

[Close]

BLAST of Cmc05g0136391 vs. ExPASy Swiss-Prot
Match: P49642 (DNA primase small subunit OS=Homo sapiens OX=9606 GN=PRIM1 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.6e-07
Identity = 23/54 (42.59%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 58  TGSRGVHCWACDGKAKRLSNEQRAAIAEYFHLYQGNENSSKKISLTGPVLHPFL 112
           +G RGVHCW CD   ++LS+  R+ I EY  L +G ++  KK+ L+  + HPF+
Sbjct: 160 SGRRGVHCWVCDESVRKLSSAVRSGIVEYLSLVKGGQDVKKKVHLSEKI-HPFI 212

[Close]

BLAST of Cmc05g0136391 vs. ExPASy Swiss-Prot
Match: P20664 (DNA primase small subunit OS=Mus musculus OX=10090 GN=Prim1 PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.1e-07
Identity = 24/54 (44.44%), Postives = 34/54 (62.96%), Query Frame = 0


Query: 58  TGSRGVHCWACDGKAKRLSNEQRAAIAEYFHLYQGNENSSKKISLTGPVLHPFL 112
           +G RGVHCW CD   ++LS+  R+ I EY  L +G ++  KK+ L   V HPF+
Sbjct: 160 SGRRGVHCWVCDESVRKLSSAVRSGIVEYLSLVKGGQDVKKKVHLNEKV-HPFV 212

[Close]

BLAST of Cmc05g0136391 vs. ExPASy Swiss-Prot
Match: Q7KQM1 (DNA primase small subunit OS=Plasmodium falciparum (isolate 3D7) OX=36329 GN=PF14_0366 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.9e-07
Identity = 28/115 (24.35%), Postives = 47/115 (40.87%), Query Frame = 0


Query: 42  NVFTPVERELVFDIDM-------------------------------------------- 101
           ++F PV++EL+FDIDM                                            
Sbjct: 118 DIFLPVQKELIFDIDMNDYDDIRTCCTDKKVCKLCWKFLTVAIVLLDTALREDFSFEHIL 177

Query: 102 ---TGSRGVHCWACDGKAKRLSNEQRAAIAEYFHLYQGNENSSKKISLTGPVLHP 110
              +G RG+HCW  D   +  + + RAA+A+Y ++  G++   KK+S+ G   +P
Sbjct: 178 WVYSGRRGIHCWVADESCRYYTTDARAALADYLNILSGSDTKKKKVSIWGKDKYP 232

[Close]

BLAST of Cmc05g0136391 vs. ExPASy Swiss-Prot
Match: Q25998 (DNA primase small subunit OS=Plasmodium falciparum (isolate K1 / Thailand) OX=5839 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.9e-07
Identity = 28/115 (24.35%), Postives = 47/115 (40.87%), Query Frame = 0


Query: 42  NVFTPVERELVFDIDM-------------------------------------------- 101
           ++F PV++EL+FDIDM                                            
Sbjct: 118 DIFLPVQKELIFDIDMNDYDDIRTCCTDKKVCKLCWKFLTVAIVLLDTALREDFSFEHIL 177

Query: 102 ---TGSRGVHCWACDGKAKRLSNEQRAAIAEYFHLYQGNENSSKKISLTGPVLHP 110
              +G RG+HCW  D   +  + + RAA+A+Y ++  G++   KK+S+ G   +P
Sbjct: 178 WVYSGRRGIHCWVADESCRYYTTDARAALADYLNILSGSDTKKKKVSIWGKDKYP 232

[Close]

BLAST of Cmc05g0136391 vs. ExPASy Swiss-Prot
Match: Q24317 (DNA primase small subunit OS=Drosophila melanogaster OX=7227 GN=Prim1 PE=1 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 3.3e-05
Identity = 31/111 (27.93%), Postives = 40/111 (36.04%), Query Frame = 0


Query: 26  PTFILQPAKRHAYAGNNVFTPVERELVFDIDMT--------------------------- 85
           P    +P    +  G    TPV+RELVFDIDMT                           
Sbjct: 101 PVMHSKPKNHRSIPGG--LTPVQRELVFDIDMTDYDEVRTCCSGAGVCLKCWKFMVLAAR 160

Query: 86  --------------------GSRGVHCWACDGKAKRLSNEQRAAIAEYFHL 90
                               G RG+HCW CD +A+ L    R A+AEY ++
Sbjct: 161 VLDVALREDFGFEHIIWIFSGRRGIHCWVCDYQARHLDGRGRYAVAEYLNI 209

[Close]

BLAST of Cmc05g0136391 vs. ExPASy TrEMBL
Match: A0A1S3CPJ4 (DNA primase small subunit OS=Cucumis melo OX=3656 GN=LOC103503192 PE=3 SV=1)

HSP 1 Score: 176.4 bits (446), Expect = 6.6e-41
Identity = 91/146 (62.33%), Postives = 95/146 (65.07%), Query Frame = 0


Query: 14  FFARFICLSHTLPTFILQPAKRHAYAGNNVFTPVERELVFDIDMT--------------- 73
           F +RFICLSHTLPTF+LQPAKRHAYAG+NVFTPVERELVFDIDMT               
Sbjct: 1   FCSRFICLSHTLPTFLLQPAKRHAYAGDNVFTPVERELVFDIDMTDYDDVRYCCSGADVC 60

Query: 74  --------------------------------GSRGVHCWACDGKAKRLSNEQRAAIAEY 113
                                           G RGVHCW CDGKA+RLSNEQRAAIAEY
Sbjct: 61  LDCWPLMTAAIKVIDTTLRDDFGFNHILWVFSGRRGVHCWVCDGKARRLSNEQRAAIAEY 120

[Close]

BLAST of Cmc05g0136391 vs. ExPASy TrEMBL
Match: A0A5A7T8Y3 (DNA primase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001310 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.1e-32
Identity = 77/134 (57.46%), Postives = 81/134 (60.45%), Query Frame = 0


Query: 26  PTFILQPAKRHAYAGNNVFTPVERELVFDIDMT--------------------------- 85
           P + + PAKRHAYAG+NVFTPVERELVFDIDMT                           
Sbjct: 125 PVYSVDPAKRHAYAGDNVFTPVERELVFDIDMTDYDDVRYCCSGADVCLDCWPLMTAAIK 184

Query: 86  --------------------GSRGVHCWACDGKAKRLSNEQRAAIAEYFHLYQGNENSSK 113
                               G RGVHCW CDGKA+RLSNEQRAAIAEYFHLYQGNENS K
Sbjct: 185 VIDTTLRDDFGFNHILWVFSGRRGVHCWVCDGKARRLSNEQRAAIAEYFHLYQGNENSRK 244

[Close]

BLAST of Cmc05g0136391 vs. ExPASy TrEMBL
Match: A0A6J1I8T4 (DNA primase OS=Cucurbita maxima OX=3661 GN=LOC111472037 PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 5.6e-32
Identity = 76/134 (56.72%), Postives = 80/134 (59.70%), Query Frame = 0


Query: 26  PTFILQPAKRHAYAGNNVFTPVERELVFDIDMT--------------------------- 85
           P + + PAKRHAYAG NVFTPVERELVFDIDMT                           
Sbjct: 105 PVYSVDPAKRHAYAGANVFTPVERELVFDIDMTDYDDVRYCCSGADVCLDCWPLMTAAIK 164

Query: 86  --------------------GSRGVHCWACDGKAKRLSNEQRAAIAEYFHLYQGNENSSK 113
                               G RGVHCW CDGKA+RLSNEQRAAIA+YFHLYQGNENS K
Sbjct: 165 VIDTTLRDDFGFNHILWVFSGRRGVHCWVCDGKARRLSNEQRAAIADYFHLYQGNENSRK 224

[Close]

BLAST of Cmc05g0136391 vs. ExPASy TrEMBL
Match: A0A6J1EEZ9 (DNA primase OS=Cucurbita moschata OX=3662 GN=LOC111432676 PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 5.6e-32
Identity = 76/134 (56.72%), Postives = 80/134 (59.70%), Query Frame = 0


Query: 26  PTFILQPAKRHAYAGNNVFTPVERELVFDIDMT--------------------------- 85
           P + + PAKRHAYAG NVFTPVERELVFDIDMT                           
Sbjct: 110 PVYSVDPAKRHAYAGANVFTPVERELVFDIDMTDYDDVRYCCSGADVCLDCWPLMTAAIK 169

Query: 86  --------------------GSRGVHCWACDGKAKRLSNEQRAAIAEYFHLYQGNENSSK 113
                               G RGVHCW CDGKA+RLSNEQRAAIA+YFHLYQGNENS K
Sbjct: 170 VIDTTLRDDFGFNHILWVFSGRRGVHCWVCDGKARRLSNEQRAAIADYFHLYQGNENSRK 229

[Close]

BLAST of Cmc05g0136391 vs. ExPASy TrEMBL
Match: A0A0A0KUP7 (DNA primase OS=Cucumis sativus OX=3659 GN=Csa_5G647410 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.1e-31
Identity = 75/133 (56.39%), Postives = 79/133 (59.40%), Query Frame = 0


Query: 26  PTFILQPAKRHAYAGNNVFTPVERELVFDIDMT--------------------------- 85
           P + + PAKRHAYA +NVFTPVERELVFDIDMT                           
Sbjct: 110 PVYSVDPAKRHAYADDNVFTPVERELVFDIDMTDYDDVRYCCSGADVCLDCWPLMTAAIK 169

Query: 86  --------------------GSRGVHCWACDGKAKRLSNEQRAAIAEYFHLYQGNENSSK 112
                               G RGVHCW CDGKA+RLSNEQRAAIAEYFHLYQGNENS K
Sbjct: 170 VIHTTLRDDFGFNHILWVFSGRRGVHCWVCDGKARRLSNEQRAAIAEYFHLYQGNENSRK 229

[Close]

BLAST of Cmc05g0136391 vs. TAIR 10
Match: AT5G41880.1 (DNA primases;DNA primases )

HSP 1 Score: 114.4 bits (285), Expect = 6.0e-26
Identity = 60/134 (44.78%), Postives = 73/134 (54.48%), Query Frame = 0


Query: 28  FILQPAKRHAYA--GNNVFTPVERELVFDIDMT--------------------------- 87
           + + P KRHAYA  G N+FTPVERELVFDID+T                           
Sbjct: 108 YSVDPDKRHAYAQSGTNLFTPVERELVFDIDITDYDDVRYCCSGADVCSKCWPLMTVAIK 167

Query: 88  --------------------GSRGVHCWACDGKAKRLSNEQRAAIAEYFHLYQGNENSSK 113
                               G RGVHCW CD KA+RL+NEQR+A+AEYF +Y+GNEN++K
Sbjct: 168 VIDTSLREDFGFKHILWVFSGRRGVHCWVCDAKARRLTNEQRSAVAEYFRVYKGNENNAK 227

The following BLAST results are available for this feature:

BLAST of Cmc05g0136391 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008465561.2	1.4e-40	62.33	PREDICTED: DNA primase small subunit, partial [Cucumis melo]	[more]
XP_038889665.1	2.3e-32	57.46	DNA primase small subunit [Benincasa hispida]	[more]
KAA0039338.1	2.3e-32	57.46	DNA primase, small subunit [Cucumis melo var. makuwa] >TYK00521.1 DNA primase, s...	[more]
XP_022925368.1	1.2e-31	56.72	DNA primase small subunit [Cucurbita moschata]	[more]
XP_022973496.1	1.2e-31	56.72	DNA primase small subunit [Cucurbita maxima]	[more]

BLAST of Cmc05g0136391 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49642	1.6e-07	42.59	DNA primase small subunit OS=Homo sapiens OX=9606 GN=PRIM1 PE=1 SV=1	[more]
P20664	2.1e-07	44.44	DNA primase small subunit OS=Mus musculus OX=10090 GN=Prim1 PE=1 SV=1	[more]
Q7KQM1	7.9e-07	24.35	DNA primase small subunit OS=Plasmodium falciparum (isolate 3D7) OX=36329 GN=PF1...	[more]
Q25998	7.9e-07	24.35	DNA primase small subunit OS=Plasmodium falciparum (isolate K1 / Thailand) OX=58...	[more]
Q24317	3.3e-05	27.93	DNA primase small subunit OS=Drosophila melanogaster OX=7227 GN=Prim1 PE=1 SV=2	[more]

BLAST of Cmc05g0136391 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CPJ4	6.6e-41	62.33	DNA primase small subunit OS=Cucumis melo OX=3656 GN=LOC103503192 PE=3 SV=1	[more]
A0A5A7T8Y3	1.1e-32	57.46	DNA primase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G001310 P...	[more]
A0A6J1I8T4	5.6e-32	56.72	DNA primase OS=Cucurbita maxima OX=3661 GN=LOC111472037 PE=3 SV=1	[more]
A0A6J1EEZ9	5.6e-32	56.72	DNA primase OS=Cucurbita moschata OX=3662 GN=LOC111432676 PE=3 SV=1	[more]
A0A0A0KUP7	2.1e-31	56.39	DNA primase OS=Cucumis sativus OX=3659 GN=Csa_5G647410 PE=3 SV=1	[more]

BLAST of Cmc05g0136391 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G41880.1	6.0e-26	44.78	DNA primases;DNA primases	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002755	DNA primase, small subunit	PFAM	PF01896	DNA_primase_S	coord: 54..111 e-value: 3.1E-9 score: 37.1
None	No IPR available	GENE3D	3.90.920.10	DNA primase, PRIM domain	coord: 58..112 e-value: 1.2E-13 score: 52.9
None	No IPR available	PANTHER	PTHR10536:SF1	DNA PRIMASE	coord: 28..58 coord: 58..112
None	No IPR available	SUPERFAMILY	56747	Prim-pol domain	coord: 28..106
IPR014052	DNA primase, small subunit, eukaryotic/archaeal	PANTHER	PTHR10536	DNA PRIMASE SMALL SUBUNIT	coord: 28..58 coord: 58..112

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc05g0136391.1	Cmc05g0136391.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006269	DNA replication, synthesis of RNA primer
molecular_function	GO:0003896	DNA primase activity