Cmc05g0136351 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc05g0136351
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr05: 19338021 .. 19339271 (-)
RNA-Seq Expression	Cmc05g0136351
Synteny	Cmc05g0136351

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACATCTAATTATCTTATGAACATTCCTAGTCCTACTAAATCTTTACCTCTCATTTATGCTGCTGACGGCAATTGTATGAATATCACTCACATGGGCACCATCAATACCCCTAGTTTGAATCTTCCTCATACTTACTGTGTCCCAAACTTAACATTTAATCTAATATCTGTTGGTCAATTATGCGACCTTGGCTTAACTGTCTCTTTTTCTTCCAATGGTTGTCAGGTTCAGGATCCACAAACAGGACAGATGATTGGGACGGGTCACAAAGTGGAAAGATTGTTTGAGCTCCTATCACTTCAGGTTCCTGCTCCATCTATCTCTGCCTCTGTCACTGACTCTGATACATATCAGTGGCATCTTCGTCTTGGTCATGCTTCTCTAGAAAAATTGCATCATTTAATCTCCATTAACAATTTAAATAGTATTACTAAATTTATCCCTTTTAATTGTTTAAATTGAAAACTTGCTAAGCAACCTGCTTCGTCATTTTCTAAATCCACTTCTATTTGTGATAAACCTTTTGATTTAATCCATTCTGACATTTGGGGGCTTGCCCCTACCTCCACTGTCCATGGTTATCGCTATTATGTGTTATTCATTAATGATTTCTCTCGATTTACATAGATTTATTTTCTCAAACACCGCTCTGAATTATCTCGCACTTATATTGAGTTTGCTAATATGATTCGTACCCAATTCTCTTGTCCCATCAAAACCCTTCGCACTGGCAATGCCTTGGAGTATAAAGACTCCACTCTTCTATGTTTTCTCTCCCAACAAGGTATTCTTTTTCAGCGCTCCTGCCCCCATACTTCTCAACAAAATGGACGTGCTGAGCGCAAACATTGCCACATTCTTGACTCAGTTCATGCCCTTCTTCTTTTTGCCTCTGAGAAATTTTGGGGTGAAGTAGCTCTTACATCTGTCTATACTATCAATCGTCTTCCTTCCTCCGTCCTTCAAAACATCTCTCCATTCGAAAGACTATATGGTACTCCTCCTAACTATTCCAACCTTAAAGTCTTTGGTTGTACTTGTTTTGTTCTCCTGCATTCTCATGAACACACTAAACTTGAACCCCGTACCCGCCTCTACTGTTTTCTTGGCTATGGCACAGAACATAAAGGTTTTCGTTGTTGGGATCCCCTTTCCAATAGACTTCGTATATCTCGCCATGTCACATTTTGGGAGCACACTATGTTCTCTCGTTTATCCTCCTACCACACCTCCTTCTCTAGTCCTTAA

mRNA sequence

ATGACATCTAATTATCTTATGAACATTCCTAGTCCTACTAAATCTTTACCTCTCATTTATGCTGCTGACGGCAATTGTATGAATATCACTCACATGGGCACCATCAATACCCCTAGTTTGAATCTTCCTCATACTTACTGTGTCCCAAACTTAACATTTAATCTAATATCTGTTGGTCAATTATGCGACCTTGGCTTAACTGTCTCTTTTTCTTCCAATGGTTGTCAGGTTCAGGATCCACAAACAGGACAGATGATTGGGACGGGTCACAAAGTGGAAAGATTGTTTGAGCTCCTATCACTTCAGATTTATTTTCTCAAACACCGCTCTGAATTATCTCGCACTTATATTGAGTTTGCTAATATGATTCGTACCCAATTCTCTTGTCCCATCAAAACCCTTCGCACTGGCAATGCCTTGGAGTATAAAGACTCCACTCTTCTATGTTTTCTCTCCCAACAAGGTATTCTTTTTCAGCGCTCCTGCCCCCATACTTCTCAACAAAATGGACGTGCTGAGCGCAAACATTGCCACATTCTTGACTCAGTTCATGCCCTTCTTCTTTTTGCCTCTGAGAAATTTTGGGGTGAAGTAGCTCTTACATCTGTCTATACTATCAATCGTCTTCCTTCCTCCGTCCTTCAAAACATCTCTCCATTCGAAAGACTATATGGTACTCCTCCTAACTATTCCAACCTTAAAGTCTTTGGTTGTACTTGTTTTGTTCTCCTGCATTCTCATGAACACACTAAACTTGAACCCCGTACCCGCCTCTACTGTTTTCTTGGCTATGGCACAGAACATAAAGGTTTTCGTTGTTGGGATCCCCTTTCCAATAGACTTCGTATATCTCGCCATGTCACATTTTGGGAGCACACTATGTTCTCTCGTTTATCCTCCTACCACACCTCCTTCTCTAGTCCTTAA

Coding sequence (CDS)

ATGACATCTAATTATCTTATGAACATTCCTAGTCCTACTAAATCTTTACCTCTCATTTATGCTGCTGACGGCAATTGTATGAATATCACTCACATGGGCACCATCAATACCCCTAGTTTGAATCTTCCTCATACTTACTGTGTCCCAAACTTAACATTTAATCTAATATCTGTTGGTCAATTATGCGACCTTGGCTTAACTGTCTCTTTTTCTTCCAATGGTTGTCAGGTTCAGGATCCACAAACAGGACAGATGATTGGGACGGGTCACAAAGTGGAAAGATTGTTTGAGCTCCTATCACTTCAGATTTATTTTCTCAAACACCGCTCTGAATTATCTCGCACTTATATTGAGTTTGCTAATATGATTCGTACCCAATTCTCTTGTCCCATCAAAACCCTTCGCACTGGCAATGCCTTGGAGTATAAAGACTCCACTCTTCTATGTTTTCTCTCCCAACAAGGTATTCTTTTTCAGCGCTCCTGCCCCCATACTTCTCAACAAAATGGACGTGCTGAGCGCAAACATTGCCACATTCTTGACTCAGTTCATGCCCTTCTTCTTTTTGCCTCTGAGAAATTTTGGGGTGAAGTAGCTCTTACATCTGTCTATACTATCAATCGTCTTCCTTCCTCCGTCCTTCAAAACATCTCTCCATTCGAAAGACTATATGGTACTCCTCCTAACTATTCCAACCTTAAAGTCTTTGGTTGTACTTGTTTTGTTCTCCTGCATTCTCATGAACACACTAAACTTGAACCCCGTACCCGCCTCTACTGTTTTCTTGGCTATGGCACAGAACATAAAGGTTTTCGTTGTTGGGATCCCCTTTCCAATAGACTTCGTATATCTCGCCATGTCACATTTTGGGAGCACACTATGTTCTCTCGTTTATCCTCCTACCACACCTCCTTCTCTAGTCCTTAA

Protein sequence

MTSNYLMNIPSPTKSLPLIYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNLISVGQLCDLGLTVSFSSNGCQVQDPQTGQMIGTGHKVERLFELLSLQIYFLKHRSELSRTYIEFANMIRTQFSCPIKTLRTGNALEYKDSTLLCFLSQQGILFQRSCPHTSQQNGRAERKHCHILDSVHALLLFASEKFWGEVALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGCTCFVLLHSHEHTKLEPRTRLYCFLGYGTEHKGFRCWDPLSNRLRISRHVTFWEHTMFSRLSSYHTSFSSP

Homology

[Close]

BLAST of Cmc05g0136351 vs. NCBI nr
Match: KAA0064060.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 543.9 bits (1400), Expect = 9.0e-151
Identity = 280/378 (74.07%), Postives = 286/378 (75.66%), Query Frame = 0


Query: 1   MTSNY-LMNIPSPTKSLPLIYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNLISVG 60
           MTSNY LMN PSP KSLP IYAADGNCMNITH+GT+NTPS+NLPHTYCVPNLTFNL+SVG
Sbjct: 330 MTSNYSLMNTPSPAKSLPPIYAADGNCMNITHIGTVNTPSMNLPHTYCVPNLTFNLVSVG 389

Query: 61  QLCDLGLTVSFSSNGCQVQDPQTGQMIGTGHKVERLFELLSLQ----------------- 120
           QLCDLGLTVSFS NGCQVQDPQTGQ IGTG KV RLFELLSLQ                 
Sbjct: 390 QLCDLGLTVSFSPNGCQVQDPQTGQTIGTGRKVGRLFELLSLQVPSPSSISAPVTDSDTY 449

Query: 121 --------------------------------------------------IYFLKHRSEL 180
                                                             IYFLKHRS L
Sbjct: 450 QWHLHLGHASPEKLRHLISINHLNSPTPTSTVHGYRYYVAFIDDFSRFTWIYFLKHRSAL 509

Query: 181 SRTYIEFANMIRTQFSCPIKTLRTGNALEYKDSTLLCFLSQQGILFQRSCPHTSQQNGRA 240
           SRTYIEFANMIRTQFSCPIKTLRT NALEYKDSTLL FLSQQG L QRSCPHTSQQNGRA
Sbjct: 510 SRTYIEFANMIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRA 569

Query: 241 ERKHCHILDSVHALLLFAS--EKFWGEVALTSVYTINRLPSSVLQNISPFERLYGTPPNY 300
           ERKH HILDSV ALLL AS  EKFWGE ALTSVYTINRLPSSVLQNISPFE+LYGTP NY
Sbjct: 570 ERKHRHILDSVRALLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTPSNY 629

Query: 301 SNLKVFGCTCFVLLHSHEHTKLEPRTRLYCFLGYGTEHKGFRCWDPLSNRLRISRHVTFW 309
           SNLK FGC CFVLLH HEHTKLEPR RL CFLGYGTEHKGFRCWDPLSNRLRISRHVTFW
Sbjct: 630 SNLKTFGCACFVLLHPHEHTKLEPRARLCCFLGYGTEHKGFRCWDPLSNRLRISRHVTFW 689

[Close]

BLAST of Cmc05g0136351 vs. NCBI nr
Match: KAA0037551.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK03121.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 535.8 bits (1379), Expect = 2.4e-148
Identity = 265/328 (80.79%), Postives = 275/328 (83.84%), Query Frame = 0


Query: 9   IPSPTKSLPLIYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNLISVGQLCDLGLTV 68
           + +PTKSLP IYA DGNCMNITH+ T+NTPS+NLPHTYCVPNLTFNL+SVGQLCDLGLTV
Sbjct: 160 LDNPTKSLPPIYAVDGNCMNITHISTVNTPSVNLPHTYCVPNLTFNLVSVGQLCDLGLTV 219

Query: 69  SFSSNGCQVQDPQTGQMIGTGHKVERLFELLSLQ-------------------------- 128
           SFS NGCQVQDPQTGQ IGTG KV RLFELLSLQ                          
Sbjct: 220 SFSLNGCQVQDPQTGQTIGTGRKVGRLFELLSLQGPAPTSTVHGYRYYVLFIDDFSRFTW 279

Query: 129 IYFLKHRSELSRTYIEFANMIRTQFSCPIKTLRTGNALEYKDSTLLCFLSQQGILFQRSC 188
           IYFLKHRS+LSRTYIEFANMIRTQFSCPIKTLRT NALEYKDSTLL FLSQQG L QRSC
Sbjct: 280 IYFLKHRSQLSRTYIEFANMIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGTLVQRSC 339

Query: 189 PHTSQQNGRAERKHCHILDSVHALLLFAS--EKFWGEVALTSVYTINRLPSSVLQNISPF 248
           PHTSQQNGRA+RKH HILDSV ALLL  S  EKFWGE ALTSVYTINRLPSSVLQNISPF
Sbjct: 340 PHTSQQNGRAKRKHRHILDSVRALLLSDSCPEKFWGEAALTSVYTINRLPSSVLQNISPF 399

Query: 249 ERLYGTPPNYSNLKVFGCTCFVLLHSHEHTKLEPRTRLYCFLGYGTEHKGFRCWDPLSNR 308
           E+LYGTPPNYSNLK FGC CFVLLH HEHTKLEPR RL CFLGY TEHKGF CWDPLSNR
Sbjct: 400 EKLYGTPPNYSNLKTFGCACFVLLHPHEHTKLEPRVRLCCFLGYDTEHKGFHCWDPLSNR 459

[Close]

BLAST of Cmc05g0136351 vs. NCBI nr
Match: TYK15021.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 535.4 bits (1378), Expect = 3.2e-148
Identity = 286/419 (68.26%), Postives = 290/419 (69.21%), Query Frame = 0


Query: 1   MTSNY-LMNIPSPTKSLPLIYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNLISVG 60
           MTS+Y LMN PSPTKSLP IYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNL+SVG
Sbjct: 330 MTSDYSLMNTPSPTKSLPPIYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNLVSVG 389

Query: 61  QLCDLGLTVSFSSNGCQVQDPQTGQMIGTGHKVERLFELLSLQ----------------- 120
           QLCDLGLTVSFSSNGCQVQDPQTGQ IGTG KV RLFELLSLQ                 
Sbjct: 390 QLCDLGLTVSFSSNGCQVQDPQTGQTIGTGRKVGRLFELLSLQVPSPSISAPVTDSDTYQ 449

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 450 WHLRLGHASPEKLRHLISINNLNSITKFVPFNCLNCKLAKQPALSFSKSTSICDKPFDLI 509

Query: 181 -------------------------------IYFLKHRSELSRTYIEFANMIRTQFSCPI 240
                                          IYFLKHRSELSRTYIEFANMIRTQFSCPI
Sbjct: 510 HSDIWGPAPTTTVHGYRYYVLFIDDFSRFTWIYFLKHRSELSRTYIEFANMIRTQFSCPI 569

Query: 241 KTLRTGNALEYKDSTLLCFLSQQGILFQRSCPHTSQQNGRAERKHCHILDSVHALLLFAS 300
           KTLRT NALEYKDSTLL FLSQQG L QRSCPHTSQQNGRAERKH HILDSV ALLL AS
Sbjct: 570 KTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILDSVRALLLSAS 629

Query: 301 --EKFWGEVALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGCTCFVLLHSHEH 309
             EKFWGE ALTSVYTINRLPSSVLQNISPFE+LYGTPPNYSNLKVFGC CFVLLH HEH
Sbjct: 630 CPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTPPNYSNLKVFGCACFVLLHPHEH 689

[Close]

BLAST of Cmc05g0136351 vs. NCBI nr
Match: TYK19656.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 534.3 bits (1375), Expect = 7.1e-148
Identity = 285/419 (68.02%), Postives = 288/419 (68.74%), Query Frame = 0


Query: 1   MTSNY-LMNIPSPTKSLPLIYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNLISVG 60
           MTS+Y LMN PSPTKSLP IYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNL+SVG
Sbjct: 330 MTSDYSLMNTPSPTKSLPPIYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNLVSVG 389

Query: 61  QLCDLGLTVSFSSNGCQVQDPQTGQMIGTGHKVERLFELLSLQ----------------- 120
           QLCDLG TVSFSSNGCQVQDPQTGQ IGTG KV RLFELLSLQ                 
Sbjct: 390 QLCDLGFTVSFSSNGCQVQDPQTGQTIGTGRKVGRLFELLSLQVPSPSISAPVTDSDTYQ 449

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 450 WHLRLGHASPEKLRHLISINNLNSITKFVPFNCLNCKLAKQPALSFSTSTSICDKPFDLI 509

Query: 181 -------------------------------IYFLKHRSELSRTYIEFANMIRTQFSCPI 240
                                          IYFLKHRSELSRTYIEFANMIRTQFSCPI
Sbjct: 510 HSDIWGPAPTSTVHGYRYYVLFIDDFSRFTWIYFLKHRSELSRTYIEFANMIRTQFSCPI 569

Query: 241 KTLRTGNALEYKDSTLLCFLSQQGILFQRSCPHTSQQNGRAERKHCHILDSVHALLLFAS 300
           KTLRT NALEYKDSTLL FLSQQG L QRSCPHTSQQNGRAERKH HILDSV ALLL AS
Sbjct: 570 KTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILDSVRALLLSAS 629

Query: 301 --EKFWGEVALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGCTCFVLLHSHEH 309
             EKFWGE ALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGC CFVLL  HEH
Sbjct: 630 CPEKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGCACFVLLQPHEH 689

[Close]

BLAST of Cmc05g0136351 vs. NCBI nr
Match: TYK26360.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 534.3 bits (1375), Expect = 7.1e-148
Identity = 285/419 (68.02%), Postives = 288/419 (68.74%), Query Frame = 0


Query: 1   MTSNY-LMNIPSPTKSLPLIYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNLISVG 60
           MTS+Y LMN PSPTKSLP IYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNL+SVG
Sbjct: 330 MTSDYSLMNTPSPTKSLPPIYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNLVSVG 389

Query: 61  QLCDLGLTVSFSSNGCQVQDPQTGQMIGTGHKVERLFELLSLQ----------------- 120
           QLCDLG TVSFSSNGCQVQDPQTGQ IGTG KV RLFELLSLQ                 
Sbjct: 390 QLCDLGFTVSFSSNGCQVQDPQTGQTIGTGRKVGRLFELLSLQVPSPSISAPVTDSDTYQ 449

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 450 WHLRLGHASPEKLRHLISINNLNSITKFVPFNCLNCKLAKQPALSFSTSTSICDKPFDLI 509

Query: 181 -------------------------------IYFLKHRSELSRTYIEFANMIRTQFSCPI 240
                                          IYFLKHRSELSRTYIEFANMIRTQFSCPI
Sbjct: 510 HSDIWGPAPTSTVHGYRYYVLFIDDFSRFTWIYFLKHRSELSRTYIEFANMIRTQFSCPI 569

Query: 241 KTLRTGNALEYKDSTLLCFLSQQGILFQRSCPHTSQQNGRAERKHCHILDSVHALLLFAS 300
           KTLRT NALEYKDSTLL FLSQQG L QRSCPHTSQQNGRAERKH HILDSV ALLL AS
Sbjct: 570 KTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILDSVRALLLSAS 629

Query: 301 --EKFWGEVALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGCTCFVLLHSHEH 309
             EKFWGE ALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGC CFVLL  HEH
Sbjct: 630 CPEKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGCACFVLLQPHEH 689

[Close]

BLAST of Cmc05g0136351 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.1e-33
Identity = 77/192 (40.10%), Postives = 111/192 (57.81%), Query Frame = 0


Query: 103 IYFLKHRSELSRTYIEFANMIRTQFSCPIKTLRTGNALEYKDSTLLCFLSQQGILFQRSC 162
           +Y LK +S++  T+I F N++  +F   I T  + N  E+    L  + SQ GI    S 
Sbjct: 558 LYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGGEF--VALWEYFSQHGISHLTSP 617

Query: 163 PHTSQQNGRAERKHCHILDSVHALLLFAS--EKFWGEVALTSVYTINRLPSSVLQNISPF 222
           PHT + NG +ERKH HI+++   LL  AS  + +W      +VY INRLP+ +LQ  SPF
Sbjct: 618 PHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPF 677

Query: 223 ERLYGTPPNYSNLKVFGCTCFVLLHSHEHTKLEPRTRLYCFLGYGTEHKGFRCWDPLSNR 282
           ++L+GT PNY  L+VFGC C+  L  +   KL+ ++R   FLGY      + C    ++R
Sbjct: 678 QKLFGTSPNYDKLRVFGCACYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSR 737

Query: 283 LRISRHVTFWEH 293
           L ISRHV F E+
Sbjct: 738 LYISRHVRFDEN 747

[Close]

BLAST of Cmc05g0136351 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 1.0e-32
Identity = 77/191 (40.31%), Postives = 109/191 (57.07%), Query Frame = 0


Query: 103 IYFLKHRSELSRTYIEFANMIRTQFSCPIKTLRTGNALEYKDSTLLCFLSQQGILFQRSC 162
           +Y LK +S++  T+I F +++  +F   I TL + N  E+    L  +LSQ GI    S 
Sbjct: 537 LYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEF--VVLRDYLSQHGISHFTSP 596

Query: 163 PHTSQQNGRAERKHCHILDSVHALLLFAS--EKFWGEVALTSVYTINRLPSSVLQNISPF 222
           PHT + NG +ERKH HI++    LL  AS  + +W      +VY INRLP+ +LQ  SPF
Sbjct: 597 PHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPF 656

Query: 223 ERLYGTPPNYSNLKVFGCTCFVLLHSHEHTKLEPRTRLYCFLGYGTEHKGFRCWDPLSNR 282
           ++L+G PPNY  LKVFGC C+  L  +   KLE +++   F+GY      + C    + R
Sbjct: 657 QKLFGQPPNYEKLKVFGCACYPWLRPYNRHKLEDKSKQCAFMGYSLTQSAYLCLHIPTGR 716

Query: 283 LRISRHVTFWE 292
           L  SRHV F E
Sbjct: 717 LYTSRHVQFDE 725

[Close]

BLAST of Cmc05g0136351 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 7.2e-26
Identity = 66/193 (34.20%), Postives = 101/193 (52.33%), Query Frame = 0


Query: 101 LQIYFLKHRSELSRTYIEFANMIRTQFSCPIKTLRTGNALEYKDSTLLCFLSQQGILFQR 160
           L +Y LK + ++ + + +F  ++  +    +K LR+ N  EY       + S  GI  ++
Sbjct: 514 LWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEK 573

Query: 161 SCPHTSQQNGRAERKHCHILDSVHALLLFAS--EKFWGEVALTSVYTINRLPSSVLQNIS 220
           + P T Q NG AER +  I++ V ++L  A   + FWGE   T+ Y INR PS  L    
Sbjct: 574 TVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWGEAVQTACYLINRSPSVPLAFEI 633

Query: 221 PFERLYGTPPNYSNLKVFGCTCFVLLHSHEHTKLEPRTRLYCFLGYGTEHKGFRCWDPLS 280
           P         +YS+LKVFGC  F  +   + TKL+ ++    F+GYG E  G+R WDP+ 
Sbjct: 634 PERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTKLDDKSIPCIFIGYGDEEFGYRLWDPVK 693

Query: 281 NRLRISRHVTFWE 292
            ++  SR V F E
Sbjct: 694 KKVIRSRDVVFRE 706

[Close]

BLAST of Cmc05g0136351 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 99.8 bits (247), Expect = 5.9e-20
Identity = 62/207 (29.95%), Postives = 104/207 (50.24%), Query Frame = 0


Query: 104 YFLKHRSELSRTYIEFANMIRTQFSCPIKTLRTGNALEYKDSTLLCFLSQQGILFQRSCP 163
           Y +K++S++   + +F       F+  +  L   N  EY  + +  F  ++GI +  + P
Sbjct: 517 YLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVP 576

Query: 164 HTSQQNGRAERKHCHILDSVHALLLFA--SEKFWGEVALTSVYTINRLPSSVLQNIS--P 223
           HT Q NG +ER    I +    ++  A   + FWGE  LT+ Y INR+PS  L + S  P
Sbjct: 577 HTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTP 636

Query: 224 FERLYGTPPNYSNLKVFGCTCFVLLHSHEHTKLEPRTRLYCFLGYGTEHKGFRCWDPLSN 283
           +E  +   P   +L+VFG T +V +  ++  K + ++    F+GY  E  GF+ WD ++ 
Sbjct: 637 YEMWHNKKPYLKHLRVFGATVYVHI-KNKQGKFDDKSFKSIFVGY--EPNGFKLWDAVNE 696

Query: 284 RLRISRHVTFWEHTMF-SRLSSYHTSF 306
           +  ++R V   E  M  SR   + T F
Sbjct: 697 KFIVARDVVVDETNMVNSRAVKFETVF 720

[Close]

BLAST of Cmc05g0136351 vs. ExPASy TrEMBL
Match: A0A5A7V9Z8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold99G00670 PE=4 SV=1)

HSP 1 Score: 543.9 bits (1400), Expect = 4.4e-151
Identity = 280/378 (74.07%), Postives = 286/378 (75.66%), Query Frame = 0


Query: 1   MTSNY-LMNIPSPTKSLPLIYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNLISVG 60
           MTSNY LMN PSP KSLP IYAADGNCMNITH+GT+NTPS+NLPHTYCVPNLTFNL+SVG
Sbjct: 330 MTSNYSLMNTPSPAKSLPPIYAADGNCMNITHIGTVNTPSMNLPHTYCVPNLTFNLVSVG 389

Query: 61  QLCDLGLTVSFSSNGCQVQDPQTGQMIGTGHKVERLFELLSLQ----------------- 120
           QLCDLGLTVSFS NGCQVQDPQTGQ IGTG KV RLFELLSLQ                 
Sbjct: 390 QLCDLGLTVSFSPNGCQVQDPQTGQTIGTGRKVGRLFELLSLQVPSPSSISAPVTDSDTY 449

Query: 121 --------------------------------------------------IYFLKHRSEL 180
                                                             IYFLKHRS L
Sbjct: 450 QWHLHLGHASPEKLRHLISINHLNSPTPTSTVHGYRYYVAFIDDFSRFTWIYFLKHRSAL 509

Query: 181 SRTYIEFANMIRTQFSCPIKTLRTGNALEYKDSTLLCFLSQQGILFQRSCPHTSQQNGRA 240
           SRTYIEFANMIRTQFSCPIKTLRT NALEYKDSTLL FLSQQG L QRSCPHTSQQNGRA
Sbjct: 510 SRTYIEFANMIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRA 569

Query: 241 ERKHCHILDSVHALLLFAS--EKFWGEVALTSVYTINRLPSSVLQNISPFERLYGTPPNY 300
           ERKH HILDSV ALLL AS  EKFWGE ALTSVYTINRLPSSVLQNISPFE+LYGTP NY
Sbjct: 570 ERKHRHILDSVRALLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTPSNY 629

Query: 301 SNLKVFGCTCFVLLHSHEHTKLEPRTRLYCFLGYGTEHKGFRCWDPLSNRLRISRHVTFW 309
           SNLK FGC CFVLLH HEHTKLEPR RL CFLGYGTEHKGFRCWDPLSNRLRISRHVTFW
Sbjct: 630 SNLKTFGCACFVLLHPHEHTKLEPRARLCCFLGYGTEHKGFRCWDPLSNRLRISRHVTFW 689

[Close]

BLAST of Cmc05g0136351 vs. ExPASy TrEMBL
Match: A0A5D3BTS2 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00580 PE=4 SV=1)

HSP 1 Score: 535.8 bits (1379), Expect = 1.2e-148
Identity = 265/328 (80.79%), Postives = 275/328 (83.84%), Query Frame = 0


Query: 9   IPSPTKSLPLIYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNLISVGQLCDLGLTV 68
           + +PTKSLP IYA DGNCMNITH+ T+NTPS+NLPHTYCVPNLTFNL+SVGQLCDLGLTV
Sbjct: 160 LDNPTKSLPPIYAVDGNCMNITHISTVNTPSVNLPHTYCVPNLTFNLVSVGQLCDLGLTV 219

Query: 69  SFSSNGCQVQDPQTGQMIGTGHKVERLFELLSLQ-------------------------- 128
           SFS NGCQVQDPQTGQ IGTG KV RLFELLSLQ                          
Sbjct: 220 SFSLNGCQVQDPQTGQTIGTGRKVGRLFELLSLQGPAPTSTVHGYRYYVLFIDDFSRFTW 279

Query: 129 IYFLKHRSELSRTYIEFANMIRTQFSCPIKTLRTGNALEYKDSTLLCFLSQQGILFQRSC 188
           IYFLKHRS+LSRTYIEFANMIRTQFSCPIKTLRT NALEYKDSTLL FLSQQG L QRSC
Sbjct: 280 IYFLKHRSQLSRTYIEFANMIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGTLVQRSC 339

Query: 189 PHTSQQNGRAERKHCHILDSVHALLLFAS--EKFWGEVALTSVYTINRLPSSVLQNISPF 248
           PHTSQQNGRA+RKH HILDSV ALLL  S  EKFWGE ALTSVYTINRLPSSVLQNISPF
Sbjct: 340 PHTSQQNGRAKRKHRHILDSVRALLLSDSCPEKFWGEAALTSVYTINRLPSSVLQNISPF 399

Query: 249 ERLYGTPPNYSNLKVFGCTCFVLLHSHEHTKLEPRTRLYCFLGYGTEHKGFRCWDPLSNR 308
           E+LYGTPPNYSNLK FGC CFVLLH HEHTKLEPR RL CFLGY TEHKGF CWDPLSNR
Sbjct: 400 EKLYGTPPNYSNLKTFGCACFVLLHPHEHTKLEPRVRLCCFLGYDTEHKGFHCWDPLSNR 459

[Close]

BLAST of Cmc05g0136351 vs. ExPASy TrEMBL
Match: A0A5D3CT53 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G00560 PE=4 SV=1)

HSP 1 Score: 535.4 bits (1378), Expect = 1.5e-148
Identity = 286/419 (68.26%), Postives = 290/419 (69.21%), Query Frame = 0


Query: 1   MTSNY-LMNIPSPTKSLPLIYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNLISVG 60
           MTS+Y LMN PSPTKSLP IYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNL+SVG
Sbjct: 330 MTSDYSLMNTPSPTKSLPPIYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNLVSVG 389

Query: 61  QLCDLGLTVSFSSNGCQVQDPQTGQMIGTGHKVERLFELLSLQ----------------- 120
           QLCDLGLTVSFSSNGCQVQDPQTGQ IGTG KV RLFELLSLQ                 
Sbjct: 390 QLCDLGLTVSFSSNGCQVQDPQTGQTIGTGRKVGRLFELLSLQVPSPSISAPVTDSDTYQ 449

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 450 WHLRLGHASPEKLRHLISINNLNSITKFVPFNCLNCKLAKQPALSFSKSTSICDKPFDLI 509

Query: 181 -------------------------------IYFLKHRSELSRTYIEFANMIRTQFSCPI 240
                                          IYFLKHRSELSRTYIEFANMIRTQFSCPI
Sbjct: 510 HSDIWGPAPTTTVHGYRYYVLFIDDFSRFTWIYFLKHRSELSRTYIEFANMIRTQFSCPI 569

Query: 241 KTLRTGNALEYKDSTLLCFLSQQGILFQRSCPHTSQQNGRAERKHCHILDSVHALLLFAS 300
           KTLRT NALEYKDSTLL FLSQQG L QRSCPHTSQQNGRAERKH HILDSV ALLL AS
Sbjct: 570 KTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILDSVRALLLSAS 629

Query: 301 --EKFWGEVALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGCTCFVLLHSHEH 309
             EKFWGE ALTSVYTINRLPSSVLQNISPFE+LYGTPPNYSNLKVFGC CFVLLH HEH
Sbjct: 630 CPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTPPNYSNLKVFGCACFVLLHPHEH 689

[Close]

BLAST of Cmc05g0136351 vs. ExPASy TrEMBL
Match: A0A5A7VIT8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00050 PE=4 SV=1)

HSP 1 Score: 534.3 bits (1375), Expect = 3.4e-148
Identity = 285/419 (68.02%), Postives = 288/419 (68.74%), Query Frame = 0


Query: 1   MTSNY-LMNIPSPTKSLPLIYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNLISVG 60
           MTS+Y LMN PSPTKSLP IYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNL+SVG
Sbjct: 330 MTSDYSLMNTPSPTKSLPPIYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNLVSVG 389

Query: 61  QLCDLGLTVSFSSNGCQVQDPQTGQMIGTGHKVERLFELLSLQ----------------- 120
           QLCDLG TVSFSSNGCQVQDPQTGQ IGTG KV RLFELLSLQ                 
Sbjct: 390 QLCDLGFTVSFSSNGCQVQDPQTGQTIGTGRKVGRLFELLSLQVPSPSISAPVTDSDTYQ 449

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 450 WHLRLGHASPEKLRHLISINNLNSITKFVPFNCLNCKLAKQPALSFSTSTSICDKPFDLI 509

Query: 181 -------------------------------IYFLKHRSELSRTYIEFANMIRTQFSCPI 240
                                          IYFLKHRSELSRTYIEFANMIRTQFSCPI
Sbjct: 510 HSDIWGPAPTSTVHGYRYYVLFIDDFSRFTWIYFLKHRSELSRTYIEFANMIRTQFSCPI 569

Query: 241 KTLRTGNALEYKDSTLLCFLSQQGILFQRSCPHTSQQNGRAERKHCHILDSVHALLLFAS 300
           KTLRT NALEYKDSTLL FLSQQG L QRSCPHTSQQNGRAERKH HILDSV ALLL AS
Sbjct: 570 KTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILDSVRALLLSAS 629

Query: 301 --EKFWGEVALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGCTCFVLLHSHEH 309
             EKFWGE ALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGC CFVLL  HEH
Sbjct: 630 CPEKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGCACFVLLQPHEH 689

[Close]

BLAST of Cmc05g0136351 vs. ExPASy TrEMBL
Match: A0A5D3D7V8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G00480 PE=4 SV=1)

HSP 1 Score: 534.3 bits (1375), Expect = 3.4e-148
Identity = 285/419 (68.02%), Postives = 288/419 (68.74%), Query Frame = 0


Query: 1   MTSNY-LMNIPSPTKSLPLIYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNLISVG 60
           MTS+Y LMN PSPTKSLP IYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNL+SVG
Sbjct: 330 MTSDYSLMNTPSPTKSLPPIYAADGNCMNITHMGTINTPSLNLPHTYCVPNLTFNLVSVG 389

Query: 61  QLCDLGLTVSFSSNGCQVQDPQTGQMIGTGHKVERLFELLSLQ----------------- 120
           QLCDLG TVSFSSNGCQVQDPQTGQ IGTG KV RLFELLSLQ                 
Sbjct: 390 QLCDLGFTVSFSSNGCQVQDPQTGQTIGTGRKVGRLFELLSLQVPSPSISAPVTDSDTYQ 449

Query: 121 ------------------------------------------------------------ 180
                                                                       
Sbjct: 450 WHLRLGHASPEKLRHLISINNLNSITKFVPFNCLNCKLAKQPALSFSTSTSICDKPFDLI 509

Query: 181 -------------------------------IYFLKHRSELSRTYIEFANMIRTQFSCPI 240
                                          IYFLKHRSELSRTYIEFANMIRTQFSCPI
Sbjct: 510 HSDIWGPAPTSTVHGYRYYVLFIDDFSRFTWIYFLKHRSELSRTYIEFANMIRTQFSCPI 569

Query: 241 KTLRTGNALEYKDSTLLCFLSQQGILFQRSCPHTSQQNGRAERKHCHILDSVHALLLFAS 300
           KTLRT NALEYKDSTLL FLSQQG L QRSCPHTSQQNGRAERKH HILDSV ALLL AS
Sbjct: 570 KTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILDSVRALLLSAS 629

Query: 301 --EKFWGEVALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGCTCFVLLHSHEH 309
             EKFWGE ALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGC CFVLL  HEH
Sbjct: 630 CPEKFWGEAALTSVYTINRLPSSVLQNISPFERLYGTPPNYSNLKVFGCACFVLLQPHEH 689

The following BLAST results are available for this feature:

BLAST of Cmc05g0136351 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0064060.1	9.0e-151	74.07	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0037551.1	2.4e-148	80.79	putative mitochondrial protein [Cucumis melo var. makuwa] >TYK03121.1 putative m...	[more]
TYK15021.1	3.2e-148	68.26	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK19656.1	7.1e-148	68.02	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK26360.1	7.1e-148	68.02	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc05g0136351 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	2.1e-33	40.10	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	1.0e-32	40.31	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	7.2e-26	34.20	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	5.9e-20	29.95	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Cmc05g0136351 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V9Z8	4.4e-151	74.07	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3BTS2	1.2e-148	80.79	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A5D3CT53	1.5e-148	68.26	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7VIT8	3.4e-148	68.02	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3D7V8	3.4e-148	68.02	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc05g0136351 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 100..227 e-value: 2.5E-19 score: 71.6
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 109..296
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 95..227 score: 10.847442
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 102..236

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc05g0136351.1	Cmc05g0136351.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding