Cmc05g0135941 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc05g0135941
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag-pol polyprotein
Location	CMiso1.1chr05: 18736047 .. 18736463 (+)
RNA-Seq Expression	Cmc05g0135941
Synteny	Cmc05g0135941

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTTAAAAGTTCTTTTCTAAATGGGTACTTGAACAAAGAAGTTTATGTGACACAACCAAAGGGTTTTATTGATCCAATTTATCCACAGTATGTGTACAAACTAAATAAGGCATTATATGGGCTCAAACAAACCCCCAAGGCTTGGTATGAACGATTAACCATCTATTTATGTCATAAAGGTTACTTTAAGGGAGGGGTTGATAATACCTTATTCATTAATAAATCTGACAAGGATATGATTGTGGCACAAATATATGTTGATGACATCATATTTGGTGGATTTCTAGAAGAGTTAGTCAGCAATTTTATTAATATCATGCAATCTGAATTTGAGATGAGCATGGTTGGAGAGCTTTCCTGCTTTCTTGGACTTCAAATTAAGCAGAAACAAGAAGGGGATTTTTACATCTAA

mRNA sequence

ATGGATGTTAAAAGTTCTTTTCTAAATGGGTACTTGAACAAAGAAGTTTATGTGACACAACCAAAGGGTTTTATTGATCCAATTTATCCACAGTATGTGTACAAACTAAATAAGGCATTATATGGGCTCAAACAAACCCCCAAGGCTTGGTATGAACGATTAACCATCTATTTATGTCATAAAGGTTACTTTAAGGGAGGGGTTGATAATACCTTATTCATTAATAAATCTGACAAGGATATGATTGTGGCACAAATATATGTTGATGACATCATATTTGGTGGATTTCTAGAAGAGTTAGTCAGCAATTTTATTAATATCATGCAATCTGAATTTGAGATGAGCATGGTTGGAGAGCTTTCCTGCTTTCTTGGACTTCAAATTAAGCAGAAACAAGAAGGGGATTTTTACATCTAA

Coding sequence (CDS)

ATGGATGTTAAAAGTTCTTTTCTAAATGGGTACTTGAACAAAGAAGTTTATGTGACACAACCAAAGGGTTTTATTGATCCAATTTATCCACAGTATGTGTACAAACTAAATAAGGCATTATATGGGCTCAAACAAACCCCCAAGGCTTGGTATGAACGATTAACCATCTATTTATGTCATAAAGGTTACTTTAAGGGAGGGGTTGATAATACCTTATTCATTAATAAATCTGACAAGGATATGATTGTGGCACAAATATATGTTGATGACATCATATTTGGTGGATTTCTAGAAGAGTTAGTCAGCAATTTTATTAATATCATGCAATCTGAATTTGAGATGAGCATGGTTGGAGAGCTTTCCTGCTTTCTTGGACTTCAAATTAAGCAGAAACAAGAAGGGGATTTTTACATCTAA

Protein sequence

MDVKSSFLNGYLNKEVYVTQPKGFIDPIYPQYVYKLNKALYGLKQTPKAWYERLTIYLCHKGYFKGGVDNTLFINKSDKDMIVAQIYVDDIIFGGFLEELVSNFINIMQSEFEMSMVGELSCFLGLQIKQKQEGDFYI

Homology

[Close]

BLAST of Cmc05g0135941 vs. NCBI nr
Match: KAA0048229.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK08026.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 220.3 bits (560), Expect = 1.0e-53
Identity = 103/136 (75.74%), Postives = 122/136 (89.71%), Query Frame = 0


Query: 1   MDVKSSFLNGYLNKEVYVTQPKGFIDPIYPQYVYKLNKALYGLKQTPKAWYERLTIYLCH 60
           MDVKS+FLNGYLN+EVYV QPKGF+D  +P++VYKLNKALYGLKQ  +AWY+RLT+YL  
Sbjct: 1   MDVKSAFLNGYLNEEVYVAQPKGFVDFEHPKHVYKLNKALYGLKQASRAWYDRLTVYLRG 60

Query: 61  KGYFKGGVDNTLFINKSDKDMIVAQIYVDDIIFGGFLEELVSNFINIMQSEFEMSMVGEL 120
           KGY+KG +DNTLFI++    ++VAQIYVDDIIFGGFL++LV+NFINIMQSEFEMSMVGEL
Sbjct: 61  KGYYKGEIDNTLFIHRKSDQLLVAQIYVDDIIFGGFLQDLVNNFINIMQSEFEMSMVGEL 120

Query: 121 SCFLGLQIKQKQEGDF 137
           SCFLGLQIKQK +G F
Sbjct: 121 SCFLGLQIKQKNDGIF 136

[Close]

BLAST of Cmc05g0135941 vs. NCBI nr
Match: KAA0059680.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa] >TYK26118.1 putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 214.2 bits (544), Expect = 7.3e-52
Identity = 101/136 (74.26%), Postives = 116/136 (85.29%), Query Frame = 0


Query: 1   MDVKSSFLNGYLNKEVYVTQPKGFIDPIYPQYVYKLNKALYGLKQTPKAWYERLTIYLCH 60
           MDVKS+FLNGYLN+E+Y  QPKGF D  +PQ+VYKLNKALYG+KQ P+ WYERLTIYL  
Sbjct: 1   MDVKSAFLNGYLNEELYAVQPKGFTDSEFPQHVYKLNKALYGIKQAPRVWYERLTIYLGC 60

Query: 61  KGYFKGGVDNTLFINKSDKDMIVAQIYVDDIIFGGFLEELVSNFINIMQSEFEMSMVGEL 120
           KGYFKGG D TLFIN++D D+IVAQIY DDIIF GF +EL+ NFI+IM+SEFEMSMVGEL
Sbjct: 61  KGYFKGGADKTLFINRTDNDLIVAQIYFDDIIFRGFPKELIDNFIDIMKSEFEMSMVGEL 120

Query: 121 SCFLGLQIKQKQEGDF 137
            CFL LQIKQ+ EG F
Sbjct: 121 FCFLSLQIKQRSEGIF 136

[Close]

BLAST of Cmc05g0135941 vs. NCBI nr
Match: KAA0054435.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK14601.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 213.4 bits (542), Expect = 1.2e-51
Identity = 102/136 (75.00%), Postives = 118/136 (86.76%), Query Frame = 0


Query: 1   MDVKSSFLNGYLNKEVYVTQPKGFIDPIYPQYVYKLNKALYGLKQTPKAWYERLTIYLCH 60
           M VKS+FLNGYLN+EVYVTQPKGF+DP +PQYVYKLNKALY LKQ P+AWYERLT+YL  
Sbjct: 758 MHVKSAFLNGYLNEEVYVTQPKGFVDPEFPQYVYKLNKALYRLKQAPQAWYERLTMYLGE 817

Query: 61  KGYFKGGVDNTLFINKSDKDMIVAQIYVDDIIFGGFLEELVSNFINIMQSEFEMSMVGEL 120
           + Y +G  D TLFIN++  ++IVAQIYVDDIIFGGF + LV NFINIM+SEFEMS+VGEL
Sbjct: 818 RVYSRGETDKTLFINRTSTNLIVAQIYVDDIIFGGFPKTLVDNFINIMKSEFEMSLVGEL 877

Query: 121 SCFLGLQIKQKQEGDF 137
           SCFLGLQIKQ+ EG F
Sbjct: 878 SCFLGLQIKQRSEGMF 893

[Close]

BLAST of Cmc05g0135941 vs. NCBI nr
Match: KAA0037650.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK22795.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 212.6 bits (540), Expect = 2.1e-51
Identity = 100/136 (73.53%), Postives = 117/136 (86.03%), Query Frame = 0


Query: 1   MDVKSSFLNGYLNKEVYVTQPKGFIDPIYPQYVYKLNKALYGLKQTPKAWYERLTIYLCH 60
           MDVKS+FLNGYLN+EVYV QPKGF+D  +PQYVYKLNKALYGLKQ P+AWYERLT+YL  
Sbjct: 221 MDVKSAFLNGYLNEEVYVAQPKGFVDSEFPQYVYKLNKALYGLKQAPRAWYERLTMYLGE 280

Query: 61  KGYFKGGVDNTLFINKSDKDMIVAQIYVDDIIFGGFLEELVSNFINIMQSEFEMSMVGEL 120
           +GY +G  + TLFIN++  D+IVAQIYVDDIIFGGF + L+ NFINIM+ EFEMS+VGEL
Sbjct: 281 RGYSRGETERTLFINRTSTDLIVAQIYVDDIIFGGFPKTLIDNFINIMKLEFEMSLVGEL 340

Query: 121 SCFLGLQIKQKQEGDF 137
           SCFLGLQIKQ+ E  F
Sbjct: 341 SCFLGLQIKQRSEEMF 356

[Close]

BLAST of Cmc05g0135941 vs. NCBI nr
Match: KAA0035705.1 (gag-pol polyprotein [Cucumis melo var. makuwa] >TYK30841.1 gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 211.5 bits (537), Expect = 4.7e-51
Identity = 103/136 (75.74%), Postives = 119/136 (87.50%), Query Frame = 0


Query: 1   MDVKSSFLNGYLNKEVYVTQPKGFIDPIYPQYVYKLNKALYGLKQTPKAWYERLTIYLCH 60
           MD+KS+FLNGYLN+EVYV QPKGFID  +PQYVYKLNKALYGLKQ P+AWYE LT+YL  
Sbjct: 171 MDIKSAFLNGYLNEEVYVAQPKGFIDSEFPQYVYKLNKALYGLKQAPRAWYECLTMYLGK 230

Query: 61  KGYFKGGVDNTLFINKSDKDMIVAQIYVDDIIFGGFLEELVSNFINIMQSEFEMSMVGEL 120
           KGY KG  D TLFINK++ D+IVAQIYVDDIIFGGF + LV+NFI+I++SEFEMS+VGEL
Sbjct: 231 KGYSKGETDKTLFINKTNIDLIVAQIYVDDIIFGGFPKILVNNFIDIIKSEFEMSLVGEL 290

Query: 121 SCFLGLQIKQKQEGDF 137
           S FLGLQIKQ+ EG F
Sbjct: 291 SYFLGLQIKQRSEGIF 306

[Close]

BLAST of Cmc05g0135941 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-22
Identity = 55/134 (41.04%), Postives = 78/134 (58.21%), Query Frame = 0


Query: 1    MDVKSSFLNGYLNKEVYVTQPKGFIDPIYPQYVYKLNKALYGLKQTPKAWYERLTIYLCH 60
            +DV ++FL G L  +VY++QP GFID   P YV KL KALYGLKQ P+AWY  L  YL  
Sbjct: 1064 LDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLT 1123

Query: 61   KGYFKGGVDNTLFINKSDKDMIVAQIYVDDIIFGGFLEELVSNFINIMQSEFEMSMVGEL 120
             G+     D +LF+ +  K ++   +YVDDI+  G    L+ N ++ +   F +    EL
Sbjct: 1124 IGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEEL 1183

Query: 121  SCFLGLQIKQKQEG 135
              FLG++ K+   G
Sbjct: 1184 HYFLGIEAKRVPTG 1197

[Close]

BLAST of Cmc05g0135941 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.8e-22
Identity = 51/134 (38.06%), Postives = 79/134 (58.96%), Query Frame = 0


Query: 1    MDVKSSFLNGYLNKEVYVTQPKGFIDPIYPQYVYKLNKALYGLKQTPKAWYERLTIYLCH 60
            +DV ++FL G L  EVY++QP GF+D   P YV +L KA+YGLKQ P+AWY  L  YL  
Sbjct: 1047 LDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLT 1106

Query: 61   KGYFKGGVDNTLFINKSDKDMIVAQIYVDDIIFGGFLEELVSNFINIMQSEFEMSMVGEL 120
             G+     D +LF+ +  + +I   +YVDDI+  G    L+ + ++ +   F +    +L
Sbjct: 1107 VGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDL 1166

Query: 121  SCFLGLQIKQKQEG 135
              FLG++ K+  +G
Sbjct: 1167 HYFLGIEAKRVPQG 1180

[Close]

BLAST of Cmc05g0135941 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 3.9e-16
Identity = 44/133 (33.08%), Postives = 78/133 (58.65%), Query Frame = 0


Query: 1    MDVKSSFLNGYLNKEVYVTQPKGFIDPIYPQYVYKLNKALYGLKQTPKAWYERLTIYLCH 60
            +DVK++FL+G L +E+Y+ QP+GF        V KLNK+LYGLKQ P+ WY +   ++  
Sbjct: 921  LDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKS 980

Query: 61   KGYFKGGVDNTLFINK-SDKDMIVAQIYVDDIIFGGFLEELVSNFINIMQSEFEMSMVGE 120
            + Y K   D  ++  + S+ + I+  +YVDD++  G  + L++     +   F+M  +G 
Sbjct: 981  QTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGP 1040

Query: 121  LSCFLGLQIKQKQ 133
                LG++I +++
Sbjct: 1041 AQQILGMKIVRER 1053

[Close]

BLAST of Cmc05g0135941 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 83.6 bits (205), Expect = 2.0e-15
Identity = 42/135 (31.11%), Postives = 70/135 (51.85%), Query Frame = 0


Query: 1   MDVKSSFLNGYLNKEVYVTQPKGFIDPIYPQYVYKLNKALYGLKQTPKAWYERLTIYLCH 60
           MDV ++FLN  +++ +YV QP GF++   P YV++L   +YGLKQ P  W E +   L  
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 61  KGYFKGGVDNTLFINKSDKDMIVAQIYVDDIIFGGFLEELVSNFINIMQSEFEMSMVGEL 120
            G+ +   ++ L+   +    I   +YVDD++      ++       +   + M  +G++
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 121 SCFLGLQIKQKQEGD 136
             FLGL I Q   GD
Sbjct: 121 DKFLGLNIHQSSNGD 135

[Close]

BLAST of Cmc05g0135941 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 78.6 bits (192), Expect = 6.3e-14
Identity = 43/135 (31.85%), Postives = 74/135 (54.81%), Query Frame = 0


Query: 1    MDVKSSFLNGYLNKEVYVTQPKGFIDPIYPQYVYKLNKALYGLKQTPKAWYERLTIYLCH 60
            MDVK++FLNG L +E+Y+  P+G         V KLNKA+YGLKQ  + W+E     L  
Sbjct: 1001 MDVKTAFLNGTLKEEIYMRLPQGI--SCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKE 1060

Query: 61   KGYFKGGVDNTLFI--NKSDKDMIVAQIYVDDIIFGGFLEELVSNFINIMQSEFEMSMVG 120
              +    VD  ++I    +  + I   +YVDD++        ++NF   +  +F M+ + 
Sbjct: 1061 CEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRYLMEKFRMTDLN 1120

Query: 121  ELSCFLGLQIKQKQE 134
            E+  F+G++I+ +++
Sbjct: 1121 EIKHFIGIRIEMQED 1133

[Close]

BLAST of Cmc05g0135941 vs. ExPASy TrEMBL
Match: A0A5A7U456 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G001720 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 4.9e-54
Identity = 103/136 (75.74%), Postives = 122/136 (89.71%), Query Frame = 0


Query: 1   MDVKSSFLNGYLNKEVYVTQPKGFIDPIYPQYVYKLNKALYGLKQTPKAWYERLTIYLCH 60
           MDVKS+FLNGYLN+EVYV QPKGF+D  +P++VYKLNKALYGLKQ  +AWY+RLT+YL  
Sbjct: 1   MDVKSAFLNGYLNEEVYVAQPKGFVDFEHPKHVYKLNKALYGLKQASRAWYDRLTVYLRG 60

Query: 61  KGYFKGGVDNTLFINKSDKDMIVAQIYVDDIIFGGFLEELVSNFINIMQSEFEMSMVGEL 120
           KGY+KG +DNTLFI++    ++VAQIYVDDIIFGGFL++LV+NFINIMQSEFEMSMVGEL
Sbjct: 61  KGYYKGEIDNTLFIHRKSDQLLVAQIYVDDIIFGGFLQDLVNNFINIMQSEFEMSMVGEL 120

Query: 121 SCFLGLQIKQKQEGDF 137
           SCFLGLQIKQK +G F
Sbjct: 121 SCFLGLQIKQKNDGIF 136

[Close]

BLAST of Cmc05g0135941 vs. ExPASy TrEMBL
Match: A0A5A7UX16 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00310 PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 3.5e-52
Identity = 101/136 (74.26%), Postives = 116/136 (85.29%), Query Frame = 0


Query: 1   MDVKSSFLNGYLNKEVYVTQPKGFIDPIYPQYVYKLNKALYGLKQTPKAWYERLTIYLCH 60
           MDVKS+FLNGYLN+E+Y  QPKGF D  +PQ+VYKLNKALYG+KQ P+ WYERLTIYL  
Sbjct: 1   MDVKSAFLNGYLNEELYAVQPKGFTDSEFPQHVYKLNKALYGIKQAPRVWYERLTIYLGC 60

Query: 61  KGYFKGGVDNTLFINKSDKDMIVAQIYVDDIIFGGFLEELVSNFINIMQSEFEMSMVGEL 120
           KGYFKGG D TLFIN++D D+IVAQIY DDIIF GF +EL+ NFI+IM+SEFEMSMVGEL
Sbjct: 61  KGYFKGGADKTLFINRTDNDLIVAQIYFDDIIFRGFPKELIDNFIDIMKSEFEMSMVGEL 120

Query: 121 SCFLGLQIKQKQEGDF 137
            CFL LQIKQ+ EG F
Sbjct: 121 FCFLSLQIKQRSEGIF 136

[Close]

BLAST of Cmc05g0135941 vs. ExPASy TrEMBL
Match: A0A5D3CS19 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G001080 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 6.0e-52
Identity = 102/136 (75.00%), Postives = 118/136 (86.76%), Query Frame = 0


Query: 1   MDVKSSFLNGYLNKEVYVTQPKGFIDPIYPQYVYKLNKALYGLKQTPKAWYERLTIYLCH 60
           M VKS+FLNGYLN+EVYVTQPKGF+DP +PQYVYKLNKALY LKQ P+AWYERLT+YL  
Sbjct: 758 MHVKSAFLNGYLNEEVYVTQPKGFVDPEFPQYVYKLNKALYRLKQAPQAWYERLTMYLGE 817

Query: 61  KGYFKGGVDNTLFINKSDKDMIVAQIYVDDIIFGGFLEELVSNFINIMQSEFEMSMVGEL 120
           + Y +G  D TLFIN++  ++IVAQIYVDDIIFGGF + LV NFINIM+SEFEMS+VGEL
Sbjct: 818 RVYSRGETDKTLFINRTSTNLIVAQIYVDDIIFGGFPKTLVDNFINIMKSEFEMSLVGEL 877

Query: 121 SCFLGLQIKQKQEGDF 137
           SCFLGLQIKQ+ EG F
Sbjct: 878 SCFLGLQIKQRSEGMF 893

[Close]

BLAST of Cmc05g0135941 vs. ExPASy TrEMBL
Match: A0A5A7T2Q0 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold311G00330 PE=4 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 1.0e-51
Identity = 100/136 (73.53%), Postives = 117/136 (86.03%), Query Frame = 0


Query: 1   MDVKSSFLNGYLNKEVYVTQPKGFIDPIYPQYVYKLNKALYGLKQTPKAWYERLTIYLCH 60
           MDVKS+FLNGYLN+EVYV QPKGF+D  +PQYVYKLNKALYGLKQ P+AWYERLT+YL  
Sbjct: 221 MDVKSAFLNGYLNEEVYVAQPKGFVDSEFPQYVYKLNKALYGLKQAPRAWYERLTMYLGE 280

Query: 61  KGYFKGGVDNTLFINKSDKDMIVAQIYVDDIIFGGFLEELVSNFINIMQSEFEMSMVGEL 120
           +GY +G  + TLFIN++  D+IVAQIYVDDIIFGGF + L+ NFINIM+ EFEMS+VGEL
Sbjct: 281 RGYSRGETERTLFINRTSTDLIVAQIYVDDIIFGGFPKTLIDNFINIMKLEFEMSLVGEL 340

Query: 121 SCFLGLQIKQKQEGDF 137
           SCFLGLQIKQ+ E  F
Sbjct: 341 SCFLGLQIKQRSEEMF 356

[Close]

BLAST of Cmc05g0135941 vs. ExPASy TrEMBL
Match: A0A5A7T2M1 (Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G00360 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 2.3e-51
Identity = 103/136 (75.74%), Postives = 119/136 (87.50%), Query Frame = 0


Query: 1   MDVKSSFLNGYLNKEVYVTQPKGFIDPIYPQYVYKLNKALYGLKQTPKAWYERLTIYLCH 60
           MD+KS+FLNGYLN+EVYV QPKGFID  +PQYVYKLNKALYGLKQ P+AWYE LT+YL  
Sbjct: 171 MDIKSAFLNGYLNEEVYVAQPKGFIDSEFPQYVYKLNKALYGLKQAPRAWYECLTMYLGK 230

Query: 61  KGYFKGGVDNTLFINKSDKDMIVAQIYVDDIIFGGFLEELVSNFINIMQSEFEMSMVGEL 120
           KGY KG  D TLFINK++ D+IVAQIYVDDIIFGGF + LV+NFI+I++SEFEMS+VGEL
Sbjct: 231 KGYSKGETDKTLFINKTNIDLIVAQIYVDDIIFGGFPKILVNNFIDIIKSEFEMSLVGEL 290

Query: 121 SCFLGLQIKQKQEGDF 137
           S FLGLQIKQ+ EG F
Sbjct: 291 SYFLGLQIKQRSEGIF 306

[Close]

BLAST of Cmc05g0135941 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 80.5 bits (197), Expect = 1.2e-15
Identity = 43/138 (31.16%), Postives = 76/138 (55.07%), Query Frame = 0


Query: 1   MDVKSSFLNGYLNKEVYVTQPKGFI----DPIYPQYVYKLNKALYGLKQTPKAWYERLTI 60
           +D+ ++FLNG L++E+Y+  P G+     D + P  V  L K++YGLKQ  + W+ + ++
Sbjct: 193 LDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSV 252

Query: 61  YLCHKGYFKGGVDNTLFINKSDKDMIVAQIYVDDIIFGGFLEELVSNFINIMQSEFEMSM 120
            L   G+ +   D+T F+  +    +   +YVDDII     +  V    + ++S F++  
Sbjct: 253 TLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRD 312

Query: 121 VGELSCFLGLQIKQKQEG 135
           +G L  FLGL+I +   G
Sbjct: 313 LGPLKYFLGLEIARSAAG 330

The following BLAST results are available for this feature:

BLAST of Cmc05g0135941 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0048229.1	1.0e-53	75.74	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK08026.1 gag-pol polyprotein [...	[more]
KAA0059680.1	7.3e-52	74.26	putative gag-pol polyprotein [Cucumis melo var. makuwa] >TYK26118.1 putative gag...	[more]
KAA0054435.1	1.2e-51	75.00	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK14601.1 gag-pol polyprotein [...	[more]
KAA0037650.1	2.1e-51	73.53	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK22795.1 gag-pol polyprotein [...	[more]
KAA0035705.1	4.7e-51	75.74	gag-pol polyprotein [Cucumis melo var. makuwa] >TYK30841.1 gag-pol polyprotein [...	[more]

BLAST of Cmc05g0135941 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	1.3e-22	41.04	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	4.8e-22	38.06	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	3.9e-16	33.08	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P25600	2.0e-15	31.11	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]
P04146	6.3e-14	31.85	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Cmc05g0135941 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U456	4.9e-54	75.74	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G...	[more]
A0A5A7UX16	3.5e-52	74.26	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5D3CS19	6.0e-52	75.00	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G...	[more]
A0A5A7T2Q0	1.0e-51	73.53	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold311G...	[more]
A0A5A7T2M1	2.3e-51	75.74	Gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G...	[more]

BLAST of Cmc05g0135941 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.2e-15	31.16	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..133 e-value: 1.2E-31 score: 110.2
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..119
None	No IPR available	PANTHER	PTHR11439:SF331	SERINE/THREONINE-PROTEIN KINASE, ACTIVE SITE PROTEIN-RELATED	coord: 1..119
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc05g0135941.1	Cmc05g0135941.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding