Cmc05g0135561 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc05g0135561
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr05: 17970308 .. 17970889 (-)
RNA-Seq Expression	Cmc05g0135561
Synteny	Cmc05g0135561

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGACATATCCCCTATGCATTAGCTGTTGGTAGCTTGATGTGTGTGATGTTATGTACTAGACCTAACATCTGTTATGCGGTGGGGATAGTCAGTAGATATCGATCTAATCTAGGATTAGCTCATTGGACTGCCGTTAAAACTATCGTCAAGTATCTTAGGAGAACGAGGGATTACATGCTTGTGTATGGTTCTAAGGATTTGATTCTTACAGGATACACAAACTCTGATTTTCAAACTGATAGAGATTCTAGGAAATCTATTTCAGGTTCAGTGTTCACTCTTAACGGAGGAGCTGTACTTTGGAGAAGTGTCAAGCAAGGATGTATTGCTGACTCCACCATGGACGCAGAATATGTCGCAACTTGTGAAGCTACCAAAGAGGTTGTTTGGCTTAGGAAATTCTTGACTGATTTGGAAGTAGTTCCAAACATGTTAAAGCCAATTACTCTTTACTATGATAACAGTGGGGCTGTAGCTAATTCTAGGGAGCCCAAAAGCCACAAGCATGGAAAGCATATTGAATACACGTATCACTTGATTCGAGAGATAGTGCATCGAGGGGACATGATCGTCACATAG

mRNA sequence

ATGAGACATATCCCCTATGCATTAGCTGTTGGTAGCTTGATGTGTGTGATGTTATGTACTAGACCTAACATCTGTTATGCGGTGGGGATAGTCAGTAGATATCGATCTAATCTAGGATTAGCTCATTGGACTGCCGTTAAAACTATCGTCAAGTATCTTAGGAGAACGAGGGATTACATGCTTGTGTATGGTTCTAAGGATTTGATTCTTACAGGATACACAAACTCTGATTTTCAAACTGATAGAGATTCTAGGAAATCTATTTCAGGTTCAGTGTTCACTCTTAACGGAGGAGCTGTACTTTGGAGAAGTGTCAAGCAAGGATGTATTGCTGACTCCACCATGGACGCAGAATATGTCGCAACTTGTGAAGCTACCAAAGAGGTTGTTTGGCTTAGGAAATTCTTGACTGATTTGGAAGTAGTTCCAAACATGTTAAAGCCAATTACTCTTTACTATGATAACAGTGGGGCTGTAGCTAATTCTAGGGAGCCCAAAAGCCACAAGCATGGAAAGCATATTGAATACACGTATCACTTGATTCGAGAGATAGTGCATCGAGGGGACATGATCGTCACATAG

Coding sequence (CDS)

ATGAGACATATCCCCTATGCATTAGCTGTTGGTAGCTTGATGTGTGTGATGTTATGTACTAGACCTAACATCTGTTATGCGGTGGGGATAGTCAGTAGATATCGATCTAATCTAGGATTAGCTCATTGGACTGCCGTTAAAACTATCGTCAAGTATCTTAGGAGAACGAGGGATTACATGCTTGTGTATGGTTCTAAGGATTTGATTCTTACAGGATACACAAACTCTGATTTTCAAACTGATAGAGATTCTAGGAAATCTATTTCAGGTTCAGTGTTCACTCTTAACGGAGGAGCTGTACTTTGGAGAAGTGTCAAGCAAGGATGTATTGCTGACTCCACCATGGACGCAGAATATGTCGCAACTTGTGAAGCTACCAAAGAGGTTGTTTGGCTTAGGAAATTCTTGACTGATTTGGAAGTAGTTCCAAACATGTTAAAGCCAATTACTCTTTACTATGATAACAGTGGGGCTGTAGCTAATTCTAGGGAGCCCAAAAGCCACAAGCATGGAAAGCATATTGAATACACGTATCACTTGATTCGAGAGATAGTGCATCGAGGGGACATGATCGTCACATAG

Protein sequence

MRHIPYALAVGSLMCVMLCTRPNICYAVGIVSRYRSNLGLAHWTAVKTIVKYLRRTRDYMLVYGSKDLILTGYTNSDFQTDRDSRKSISGSVFTLNGGAVLWRSVKQGCIADSTMDAEYVATCEATKEVVWLRKFLTDLEVVPNMLKPITLYYDNSGAVANSREPKSHKHGKHIEYTYHLIREIVHRGDMIVT

Homology

[Close]

BLAST of Cmc05g0135561 vs. NCBI nr
Match: KAA0046416.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 343.2 bits (879), Expect = 1.5e-90
Identity = 168/193 (87.05%), Postives = 177/193 (91.71%), Query Frame = 0


Query: 1   MRHIPYALAVGSLMCVMLCTRPNICYAVGIVSRYRSNLGLAHWTAVKTIVKYLRRTRDYM 60
           MRHIPYA AVGSLM  MLCTRP+ICYAVGIVSRY+SN GLAHWTAVKTI+KYLRRTRDYM
Sbjct: 280 MRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYM 339

Query: 61  LVYGSKDLILTGYTNSDFQTDRDSRKSISGSVFTLNGGAVLWRSVKQGCIADSTMDAEYV 120
           LVYGSKDLILTGYT+SDFQTDRDSRKS SGSVFTLNGGAV+WRS+KQGCI DSTM+AEYV
Sbjct: 340 LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIVDSTMEAEYV 399

Query: 121 ATCEATKEVVWLRKFLTDLEVVPNMLKPITLYYDNSGAVANSREPKSHKHGKHIEYTYHL 180
           A CEA KE VWLR FL DLEVVPNM KPITLY DNSGAVANSREP+SHK GKHIE  YHL
Sbjct: 400 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 459

Query: 181 IREIVHRGDMIVT 194
           IREIVHRGD+IVT
Sbjct: 460 IREIVHRGDVIVT 472

[Close]

BLAST of Cmc05g0135561 vs. NCBI nr
Match: TYJ97618.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 342.4 bits (877), Expect = 2.5e-90
Identity = 168/193 (87.05%), Postives = 177/193 (91.71%), Query Frame = 0


Query: 1    MRHIPYALAVGSLMCVMLCTRPNICYAVGIVSRYRSNLGLAHWTAVKTIVKYLRRTRDYM 60
            MRHIPYA AVGSLM  MLCTRP+ICYAVGIVSRY+SN GLAHWTAVKTI+KYLRRTRDY 
Sbjct: 899  MRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYT 958

Query: 61   LVYGSKDLILTGYTNSDFQTDRDSRKSISGSVFTLNGGAVLWRSVKQGCIADSTMDAEYV 120
            LVYGSKDLILTGYT+SDFQTDRDSRKS SGSVFTLNGGAV+WRS+KQGCIADSTM+AEYV
Sbjct: 959  LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1018

Query: 121  ATCEATKEVVWLRKFLTDLEVVPNMLKPITLYYDNSGAVANSREPKSHKHGKHIEYTYHL 180
            A CEA KE VWLR FL DLEVVPNM KPITLY DNSGAVANSREP+SHK GKHIE  YHL
Sbjct: 1019 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 1078

Query: 181  IREIVHRGDMIVT 194
            IREIVHRGD+IVT
Sbjct: 1079 IREIVHRGDVIVT 1091

[Close]

BLAST of Cmc05g0135561 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 342.4 bits (877), Expect = 2.5e-90
Identity = 168/193 (87.05%), Postives = 177/193 (91.71%), Query Frame = 0


Query: 1    MRHIPYALAVGSLMCVMLCTRPNICYAVGIVSRYRSNLGLAHWTAVKTIVKYLRRTRDYM 60
            MRHIPYA AVGSLM  MLCTRP+ICYAVGIVSRY+SN GLAHWTAVKTI+KYLRRTRDY 
Sbjct: 1113 MRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYT 1172

Query: 61   LVYGSKDLILTGYTNSDFQTDRDSRKSISGSVFTLNGGAVLWRSVKQGCIADSTMDAEYV 120
            LVYGSKDLILTGYT+SDFQTDRDSRKS SGSVFTLNGGAV+WRS+KQGCIADSTM+AEYV
Sbjct: 1173 LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1232

Query: 121  ATCEATKEVVWLRKFLTDLEVVPNMLKPITLYYDNSGAVANSREPKSHKHGKHIEYTYHL 180
            A CEA KE VWLR FL DLEVVPNM KPITLY DNSGAVANSREP+SHK GKHIE  YHL
Sbjct: 1233 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 1292

Query: 181  IREIVHRGDMIVT 194
            IREIVHRGD+IVT
Sbjct: 1293 IREIVHRGDVIVT 1305

[Close]

BLAST of Cmc05g0135561 vs. NCBI nr
Match: TYK14550.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 342.4 bits (877), Expect = 2.5e-90
Identity = 168/193 (87.05%), Postives = 177/193 (91.71%), Query Frame = 0


Query: 1    MRHIPYALAVGSLMCVMLCTRPNICYAVGIVSRYRSNLGLAHWTAVKTIVKYLRRTRDYM 60
            MRHIPYA AVGSLM  MLCTRP+ICYAVGIVSRY+SN GLAHWTAVKTI+KYLRRTRDY 
Sbjct: 1114 MRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYT 1173

Query: 61   LVYGSKDLILTGYTNSDFQTDRDSRKSISGSVFTLNGGAVLWRSVKQGCIADSTMDAEYV 120
            LVYGSKDLILTGYT+SDFQTDRDSRKS SGSVFTLNGGAV+WRS+KQGCIADSTM+AEYV
Sbjct: 1174 LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1233

Query: 121  ATCEATKEVVWLRKFLTDLEVVPNMLKPITLYYDNSGAVANSREPKSHKHGKHIEYTYHL 180
            A CEA KE VWLR FL DLEVVPNM KPITLY DNSGAVANSREP+SHK GKHIE  YHL
Sbjct: 1234 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 1293

Query: 181  IREIVHRGDMIVT 194
            IREIVHRGD+IVT
Sbjct: 1294 IREIVHRGDVIVT 1306

[Close]

BLAST of Cmc05g0135561 vs. NCBI nr
Match: TYK19524.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 342.4 bits (877), Expect = 2.5e-90
Identity = 168/193 (87.05%), Postives = 177/193 (91.71%), Query Frame = 0


Query: 1   MRHIPYALAVGSLMCVMLCTRPNICYAVGIVSRYRSNLGLAHWTAVKTIVKYLRRTRDYM 60
           MRHIPYA AVGSLM  MLCTRP+ICYAVGIVSRY+SN GLAHWTAVKTI+KYLRRTRDY 
Sbjct: 72  MRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYT 131

Query: 61  LVYGSKDLILTGYTNSDFQTDRDSRKSISGSVFTLNGGAVLWRSVKQGCIADSTMDAEYV 120
           LVYGSKDLILTGYT+SDFQTDRDSRKS SGSVFTLNGGAV+WRS+KQGCIADSTM+AEYV
Sbjct: 132 LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 191

Query: 121 ATCEATKEVVWLRKFLTDLEVVPNMLKPITLYYDNSGAVANSREPKSHKHGKHIEYTYHL 180
           A CEA KE VWLR FL DLEVVPNM KPITLY DNSGAVANSREP+SHK GKHIE  YHL
Sbjct: 192 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 251

Query: 181 IREIVHRGDMIVT 194
           IREIVHRGD+IVT
Sbjct: 252 IREIVHRGDVIVT 264

[Close]

BLAST of Cmc05g0135561 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 2.2e-41
Identity = 87/185 (47.03%), Postives = 120/185 (64.86%), Query Frame = 0


Query: 1    MRHIPYALAVGSLMCVMLCTRPNICYAVGIVSRYRSNLGLAHWTAVKTIVKYLRRTRDYM 60
            M  +PY+ AVGSLM  M+CTRP+I +AVG+VSR+  N G  HW AVK I++YLR T    
Sbjct: 1106 MAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDC 1165

Query: 61   LVYGSKDLILTGYTNSDFQTDRDSRKSISGSVFTLNGGAVLWRSVKQGCIADSTMDAEYV 120
            L +G  D IL GYT++D   D D+RKS +G +FT +GGA+ W+S  Q C+A ST +AEY+
Sbjct: 1166 LCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYI 1225

Query: 121  ATCEATKEVVWLRKFLTDLEVVPNMLKPITLYYDNSGAVANSREPKSHKHGKHIEYTYHL 180
            A  E  KE++WL++FL +L +     K   +Y D+  A+  S+    H   KHI+  YH 
Sbjct: 1226 AATETGKEMIWLKRFLQELGL---HQKEYVVYCDSQSAIDLSKNSMYHARTKHIDVRYHW 1285

Query: 181  IREIV 186
            IRE+V
Sbjct: 1286 IREMV 1287

[Close]

BLAST of Cmc05g0135561 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 122.5 bits (306), Expect = 5.3e-27
Identity = 67/186 (36.02%), Postives = 105/186 (56.45%), Query Frame = 0


Query: 5    PYALAVGSLMCVMLCTRPNICYAVGIVSRYRSNLGLAHWTAVKTIVKYLRRTRDYMLVYG 64
            P    +G LM +MLCTRP++  AV I+SRY S      W  +K +++YL+ T D  L++ 
Sbjct: 1180 PCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIF- 1239

Query: 65   SKDLI----LTGYTNSDFQTDRDSRKSISGSVFTL-NGGAVLWRSVKQGCIADSTMDAEY 124
             K+L     + GY +SD+      RKS +G +F + +   + W + +Q  +A S+ +AEY
Sbjct: 1240 KKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEY 1299

Query: 125  VATCEATKEVVWLRKFLTDLEVVPNMLKPITLYYDNSGAVANSREPKSHKHGKHIEYTYH 184
            +A  EA +E +WL+  LT + +   +  PI +Y DN G ++ +  P  HK  KHI+  YH
Sbjct: 1300 MALFEAVREALWLKFLLTSINI--KLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYH 1359

Query: 185  LIREIV 186
              RE V
Sbjct: 1360 FAREQV 1362

[Close]

BLAST of Cmc05g0135561 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 6.5e-25
Identity = 58/133 (43.61%), Postives = 91/133 (68.42%), Query Frame = 0


Query: 1   MRHIPYALAVGSLMCVMLCTRPNICYAVGIVSRYRSNLGLAHWTAVKTIVKYLRRTRDYM 60
           M+++PY  AVG++M +M+ TRP++  AVG++S++ S+    HW A+K +++YL+ T+ Y 
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 61  LVYGSKDLI-LTGYTNSDFQTDRDSRKSISGSVFTLNGGAVLWRSVKQGCIADSTMDAEY 120
           L +       L GY+++D+  D +SR+S SG +F LNGG V WRS KQ  +A S+ + EY
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEY 120

Query: 121 VATCEATKEVVWL 133
           +A  EAT+E VWL
Sbjct: 121 MALSEATQEAVWL 133

[Close]

BLAST of Cmc05g0135561 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.0e-18
Identity = 61/188 (32.45%), Postives = 92/188 (48.94%), Query Frame = 0


Query: 6    YALAVGSLMCVMLCTRPNICYAVGIVSRYRSNLGLAHWTAVKTIVKYLRRTRDY-MLVYG 65
            Y   VGSL   +  TRP++ YAV  +S+Y       HW A+K +++YL  T D+ + +  
Sbjct: 1228 YRGIVGSLQ-YLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKK 1287

Query: 66   SKDLILTGYTNSDFQTDRDSRKSISGSVFTLNGGAVLWRSVKQGCIADSTMDAEYVATCE 125
               L L  Y+++D+  D D   S +G +  L    + W S KQ  +  S+ +AEY +   
Sbjct: 1288 GNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVAN 1347

Query: 126  ATKEVVWLRKFLTDLEVVPNMLKPITLYYDNSGAVANSREPKSHKHGKHIEYTYHLIREI 185
             + E+ W+   LT+L +   +  P  +Y DN GA      P  H   KHI   YH IR  
Sbjct: 1348 TSSELQWICSLLTELGI--QLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQ 1407

Query: 186  VHRGDMIV 193
            V  G + V
Sbjct: 1408 VQSGALRV 1412

[Close]

BLAST of Cmc05g0135561 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 3.8e-17
Identity = 60/188 (31.91%), Postives = 93/188 (49.47%), Query Frame = 0


Query: 6    YALAVGSLMCVMLCTRPNICYAVGIVSRYRSNLGLAHWTAVKTIVKYLRRTRDY-MLVYG 65
            Y   VGSL   +  TRP+I YAV  +S++       H  A+K I++YL  T ++ + +  
Sbjct: 1245 YRGIVGSLQ-YLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKK 1304

Query: 66   SKDLILTGYTNSDFQTDRDSRKSISGSVFTLNGGAVLWRSVKQGCIADSTMDAEYVATCE 125
               L L  Y+++D+  D+D   S +G +  L    + W S KQ  +  S+ +AEY +   
Sbjct: 1305 GNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVAN 1364

Query: 126  ATKEVVWLRKFLTDLEVVPNMLKPITLYYDNSGAVANSREPKSHKHGKHIEYTYHLIREI 185
             + E+ W+   LT+L +   + +P  +Y DN GA      P  H   KHI   YH IR  
Sbjct: 1365 TSSEMQWICSLLTELGI--RLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQ 1424

Query: 186  VHRGDMIV 193
            V  G + V
Sbjct: 1425 VQSGALRV 1429

[Close]

BLAST of Cmc05g0135561 vs. ExPASy TrEMBL
Match: A0A5A7TWI0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G001610 PE=4 SV=1)

HSP 1 Score: 343.2 bits (879), Expect = 7.1e-91
Identity = 168/193 (87.05%), Postives = 177/193 (91.71%), Query Frame = 0


Query: 1   MRHIPYALAVGSLMCVMLCTRPNICYAVGIVSRYRSNLGLAHWTAVKTIVKYLRRTRDYM 60
           MRHIPYA AVGSLM  MLCTRP+ICYAVGIVSRY+SN GLAHWTAVKTI+KYLRRTRDYM
Sbjct: 280 MRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYM 339

Query: 61  LVYGSKDLILTGYTNSDFQTDRDSRKSISGSVFTLNGGAVLWRSVKQGCIADSTMDAEYV 120
           LVYGSKDLILTGYT+SDFQTDRDSRKS SGSVFTLNGGAV+WRS+KQGCI DSTM+AEYV
Sbjct: 340 LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIVDSTMEAEYV 399

Query: 121 ATCEATKEVVWLRKFLTDLEVVPNMLKPITLYYDNSGAVANSREPKSHKHGKHIEYTYHL 180
           A CEA KE VWLR FL DLEVVPNM KPITLY DNSGAVANSREP+SHK GKHIE  YHL
Sbjct: 400 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 459

Query: 181 IREIVHRGDMIVT 194
           IREIVHRGD+IVT
Sbjct: 460 IREIVHRGDVIVT 472

[Close]

BLAST of Cmc05g0135561 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 1.2e-90
Identity = 168/193 (87.05%), Postives = 177/193 (91.71%), Query Frame = 0


Query: 1    MRHIPYALAVGSLMCVMLCTRPNICYAVGIVSRYRSNLGLAHWTAVKTIVKYLRRTRDYM 60
            MRHIPYA AVGSLM  MLCTRP+ICYAVGIVSRY+SN GLAHWTAVKTI+KYLRRTRDY 
Sbjct: 1114 MRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYT 1173

Query: 61   LVYGSKDLILTGYTNSDFQTDRDSRKSISGSVFTLNGGAVLWRSVKQGCIADSTMDAEYV 120
            LVYGSKDLILTGYT+SDFQTDRDSRKS SGSVFTLNGGAV+WRS+KQGCIADSTM+AEYV
Sbjct: 1174 LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1233

Query: 121  ATCEATKEVVWLRKFLTDLEVVPNMLKPITLYYDNSGAVANSREPKSHKHGKHIEYTYHL 180
            A CEA KE VWLR FL DLEVVPNM KPITLY DNSGAVANSREP+SHK GKHIE  YHL
Sbjct: 1234 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 1293

Query: 181  IREIVHRGDMIVT 194
            IREIVHRGD+IVT
Sbjct: 1294 IREIVHRGDVIVT 1306

[Close]

BLAST of Cmc05g0135561 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 1.2e-90
Identity = 168/193 (87.05%), Postives = 177/193 (91.71%), Query Frame = 0


Query: 1    MRHIPYALAVGSLMCVMLCTRPNICYAVGIVSRYRSNLGLAHWTAVKTIVKYLRRTRDYM 60
            MRHIPYA AVGSLM  MLCTRP+ICYAVGIVSRY+SN GLAHWTAVKTI+KYLRRTRDY 
Sbjct: 1114 MRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYT 1173

Query: 61   LVYGSKDLILTGYTNSDFQTDRDSRKSISGSVFTLNGGAVLWRSVKQGCIADSTMDAEYV 120
            LVYGSKDLILTGYT+SDFQTDRDSRKS SGSVFTLNGGAV+WRS+KQGCIADSTM+AEYV
Sbjct: 1174 LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1233

Query: 121  ATCEATKEVVWLRKFLTDLEVVPNMLKPITLYYDNSGAVANSREPKSHKHGKHIEYTYHL 180
            A CEA KE VWLR FL DLEVVPNM KPITLY DNSGAVANSREP+SHK GKHIE  YHL
Sbjct: 1234 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 1293

Query: 181  IREIVHRGDMIVT 194
            IREIVHRGD+IVT
Sbjct: 1294 IREIVHRGDVIVT 1306

[Close]

BLAST of Cmc05g0135561 vs. ExPASy TrEMBL
Match: A0A5A7TWB9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G00310 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 1.2e-90
Identity = 168/193 (87.05%), Postives = 177/193 (91.71%), Query Frame = 0


Query: 1    MRHIPYALAVGSLMCVMLCTRPNICYAVGIVSRYRSNLGLAHWTAVKTIVKYLRRTRDYM 60
            MRHIPYA AVGSLM  MLCTRP+ICYAVGIVSRY+SN GLAHWTAVKTI+KYLRRTRDYM
Sbjct: 1114 MRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYM 1173

Query: 61   LVYGSKDLILTGYTNSDFQTDRDSRKSISGSVFTLNGGAVLWRSVKQGCIADSTMDAEYV 120
            LVYGSKDLILTGYT+SDFQTDRDSRKS SGSVF LNGGAV+WRS+KQGCIADSTM+AEYV
Sbjct: 1174 LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFILNGGAVVWRSIKQGCIADSTMEAEYV 1233

Query: 121  ATCEATKEVVWLRKFLTDLEVVPNMLKPITLYYDNSGAVANSREPKSHKHGKHIEYTYHL 180
            A CEA KE VWLR FL DLEVVPNM KPITLY DNSGAVANSREP+SHK GKHIE  YHL
Sbjct: 1234 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 1293

Query: 181  IREIVHRGDMIVT 194
            IREIVHRGD+IVT
Sbjct: 1294 IREIVHRGDVIVT 1306

[Close]

BLAST of Cmc05g0135561 vs. ExPASy TrEMBL
Match: A0A5D3CSZ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G00320 PE=4 SV=1)

HSP 1 Score: 342.4 bits (877), Expect = 1.2e-90
Identity = 168/193 (87.05%), Postives = 177/193 (91.71%), Query Frame = 0


Query: 1    MRHIPYALAVGSLMCVMLCTRPNICYAVGIVSRYRSNLGLAHWTAVKTIVKYLRRTRDYM 60
            MRHIPYA AVGSLM  MLCTRP+ICYAVGIVSRY+SN GLAHWTAVKTI+KYLRRTRDY 
Sbjct: 1114 MRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTILKYLRRTRDYT 1173

Query: 61   LVYGSKDLILTGYTNSDFQTDRDSRKSISGSVFTLNGGAVLWRSVKQGCIADSTMDAEYV 120
            LVYGSKDLILTGYT+SDFQTDRDSRKS SGSVFTLNGGAV+WRS+KQGCIADSTM+AEYV
Sbjct: 1174 LVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCIADSTMEAEYV 1233

Query: 121  ATCEATKEVVWLRKFLTDLEVVPNMLKPITLYYDNSGAVANSREPKSHKHGKHIEYTYHL 180
            A CEA KE VWLR FL DLEVVPNM KPITLY DNSGAVANSREP+SHK GKHIE  YHL
Sbjct: 1234 AACEAAKEAVWLRNFLIDLEVVPNMSKPITLYCDNSGAVANSREPRSHKRGKHIERKYHL 1293

Query: 181  IREIVHRGDMIVT 194
            IREIVHRGD+IVT
Sbjct: 1294 IREIVHRGDVIVT 1306

[Close]

BLAST of Cmc05g0135561 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 95.1 bits (235), Expect = 6.4e-20
Identity = 59/179 (32.96%), Postives = 101/179 (56.42%), Query Frame = 0


Query: 6   YALAVGSLMCVMLCTRPNICYAVGIVSRYRSNLGLAHWTAVKTIVKYLRRTRDYMLVYGS 65
           Y   +G LM + + TR +I +AV  +S++     LAH  AV  I+ Y++ T    L Y S
Sbjct: 378 YRRLIGRLMYLQI-TRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSS 437

Query: 66  K-DLILTGYTNSDFQTDRDSRKSISGSVFTLNGGAVLWRSVKQGCIADSTMDAEYVATCE 125
           + ++ L  ++++ FQ+ +D+R+S +G    L    + W+S KQ  ++ S+ +AEY A   
Sbjct: 438 QAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSF 497

Query: 126 ATKEVVWLRKFLTDLEVVPNMLKPITLYYDNSGAVANSREPKSHKHGKHIEYTYHLIRE 184
           AT E++WL +F  +L++   + KP  L+ DN+ A+  +     H+  KHIE   H +RE
Sbjct: 498 ATDEMMWLAQFFRELQL--PLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553

[Close]

BLAST of Cmc05g0135561 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 51.2 bits (121), Expect = 1.1e-06
Identity = 33/123 (26.83%), Postives = 64/123 (52.03%), Query Frame = 0


Query: 10  VGSLMCVMLCTRPNICYAVGIVSRYRSNLGLAHWTAVKTIVKYLRRTRDY-MLVYGSKDL 69
           VG+L  + L TRP+I YAV IV +      LA +  +K +++Y++ T  + + ++ +  L
Sbjct: 104 VGALQYLTL-TRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKL 163

Query: 70  ILTGYTNSDFQTDRDSRKSISGSVFTLNGGAVLWRSVKQGCIADSTMDAEYVATCEATKE 129
            +  + +SD+     +R+S +G    L    + W + +Q  ++ S+ + EY A      E
Sbjct: 164 NVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAE 223

Query: 130 VVW 132
           + W
Sbjct: 224 LTW 225

The following BLAST results are available for this feature:

BLAST of Cmc05g0135561 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046416.1	1.5e-90	87.05	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYJ97618.1	2.5e-90	87.05	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	2.5e-90	87.05	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14550.1	2.5e-90	87.05	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK19524.1	2.5e-90	87.05	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc05g0135561 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.2e-41	47.03	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	5.3e-27	36.02	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P0CV72	6.5e-25	43.61	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
Q9ZT94	2.0e-18	32.45	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	3.8e-17	31.91	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Cmc05g0135561 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TWI0	7.1e-91	87.05	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold149G0016...	[more]
A0A5A7SMH8	1.2e-90	87.05	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	1.2e-90	87.05	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]
A0A5A7TWB9	1.2e-90	87.05	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G0031...	[more]
A0A5D3CSZ6	1.2e-90	87.05	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold552G0032...	[more]

BLAST of Cmc05g0135561 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	6.4e-20	32.96	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	1.1e-06	26.83	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 84..184
None	No IPR available	PANTHER	PTHR11439:SF273	RIBOSOME BIOGENESIS PROTEIN BOP1 HOMOLOG	coord: 84..184
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 71..192 e-value: 2.65292E-49 score: 154.934

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc05g0135561.1	Cmc05g0135561.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding