Cmc05g0135361 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc05g0135361
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pol protein
Location	CMiso1.1chr05: 17463877 .. 17465686 (-)
RNA-Seq Expression	Cmc05g0135361
Synteny	Cmc05g0135361

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCCTTGGAACCCGTGCACAAGAGGAAAAAAAAGAGAAAAGGGGGAAGGAAATCCTAGCCGCCGCACGCCGCCACAACCGTCGCCAGCCGCTCGCTCCGCAGCCACCGCGTGCTGAGTTCCAGCCACCCGCCCGAGTTCTCCCGCCAGCTGTCGCCACAAAATCAGCCGCATCGCCAGCCGCTTGCTCAACCACACCGTCGCACGTCGAGCGTCGGTCGTCGAAGCCTGCGAAGCCCAGCCGTGCCATGCCTCCGCAACCCGAGTCCCACACCCGTACTTGACCCGAACAGTCGTGCCTCGCCTTTGACCCAGTTTTTGACCCGCGCCCCTCCTCCATGAGTCGATCGCTCCGCGCCAATGCTTGTCGAGCCGTTCTGCACGCGTGAGCTGCCTGCCGAGCCATTCTGCGCGCGCGAGCCGAGCCGATTTCTGCTTTCTGGTTGAGCCGATTCGCCTGTCTTTGAGCCGTCAGCCTGCTCCGGTCCTTTACACCTAGTTTTGTAAGTTGATTGGGTTTTGGAATACCCAGTTAAGAATTTAAAATTTGTTGGATATCAAATAATTTAATTTTGGGCTTAAAATTAAATTATTTCTCTCAAGGAGCATCTAGGACCATTTGATATTGGAGCGTTGGACTTCTCCAGTTAGAAGCTCAAGTCGCAACTTCGACCTAAGGTAAGTTACTTCATTAGAATGTTTGGAGTTTTTTATCGATTGGTGATCAAATTGTGAGAAGTTTGTGTTCTAACCAGTAGGACGTCGCTGCTGGGAAAGCGTGACCTTGCGGTTAGGACTCGTTGAGCAAATCTCCAGGTAAGAGATTCTACTACTAGCTCTACGAGTAGAATTAAGAGATCGCATACATTCTTGGTTATGCACATTGATGACTAGACTGCATAGCGACATGTGATTTGATGAGGATATGATATGATATAATGATGCGATTTGATGTGATGATATGACATGATGTTATGGTATGATATGATATTATGTTTTGATATGAGGATGTGACATGATGACGTGATGATGCTATGTTATGTGTATGCTATGGTTAGGGTGCATGTTAGCTTAGCCTATTAGAGTCGTACCTGCATGGGTGTCCTTCGGGATCACCACCTATTTATGACTGCGTAGTCCGACGGGACCGCCAGTCTGACATGGATATAGATATGATTCGAGTGATTCGATGGGATCCTCGCAGCCCGATTGTCTTAGTGTTTCCTCCGGGTACGCTACAGACCAGTTTGTCCTAGGTGTTCCCTTGGGTCACCGAAGACCAGATTTTGTTCCTACAGGAGCACATGTTGCACGTGTTCGGGAACGTGCCAGTTATTGGGTACCATTTTCAGGACTCTAATAGGAAGTTAACAGGCACCTAGCGGGACTAGTAGTGGGTCCCTTAGTGAGTATTTTATACTCACTCTTTCTATTTCATGTTTCAGGCAGGGGCAGAGGTAAGGGAAAGGGCAAGCTGGCGAGCGACCAGAAGTGACAGTGGCGAGCCATATGGATCTCTTGCTTCCGCATTATGTCCGAGTTTAGACCTTGAGTGTTTGCCTTTTTATTACTCTTTATTTGTTATTTCATTTCTTTAAAATTAGATAAGGCCCGAGTTAGGATTTTAATATTTGTTTACATATCGCATATTACTTTTGATTAGGTTTTAAATAATAAATTTTTGAGGTTTCGTTTCGTTTTATCCAAACTTTACAAACTTTATTTGTCTTTTGAAATTTTAACGGCTTCGACTTAGTATAAGGAGTTGGGTCATTACAATTTATGTGTATTATTTTTTTCCCTCTTTTT

mRNA sequence

ATGAGCCTTGGAACCCGTGCACAAGAGGAAAAAAAAGAGAAAAGGGGGAAGGAAATCCTAGCCGCCGCACGCCGCCACAACCGTCGCCAGCCGCTCGCTCCGCAGCCACCGCGTGCTGAGTTCCAGCCACCCGCCCGAGTTCTCCCGCCAGCTGTCGCCACAAAATCAGCCGCATCGCCAGCCGCTTGCTCAACCACACCGTCGCACGTCGAGCGTCGGTCGTCGAAGCCTGCGAAGCCCAGCCGTGCCATGCCTCCGCAACCCGAGTCCCACACCCGTACTTGACCCGAACAGTCGTGCCTCGCCTTTGACCCAGTTTTTGACCCGCGCCCCTCCTCCATGAGTCGATCGCTCCGCGCCAATGCTTGTCGAGCCGTTCTGCACGCGTGAGCTGCCTGCCGAGCCATTCTGCGCGCGCGAGCCGAGCCGATTTCTGCTTTCTGGTTGAGCCGATTCGCCTGTCTTTGAGCCGTCAGCCTGCTCCGGTCCTTTACACCTAGTTTTGTAAGTTGATTGGGTTTTGGAATACCCAGTTAAGAATTTAAAATTTGTTGGATATCAAATAATTTAATTTTGGGCTTAAAATTAAATTATTTCTCTCAAGGAGCATCTAGGACCATTTGATATTGGAGCGTTGGACTTCTCCAGTTAGAAGCTCAAGTCGCAACTTCGACCTAAGGACGTCGCTGCTGGGAAAGCGTGACCTTGCGGTTAGGACTCGTTGAGCAAATCTCCAGGCAGGGGCAGAGGTAAGGGAAAGGGCAAGCTGGCGAGCGACCAGAAGTGACAGTGGCGAGCCATATGGATCTCTTGCTTCCGCATTATGTCCGAGTTTAGACCTTGAGTGTTTGCCTTTTTATTACTCTTTATTTGTTATTTCATTTCTTTAAAATTAGATAAGGCCCGAGTTAGGATTTTAATATTTGTTTACATATCGCATATTACTTTTGATTAGGTTTTAAATAATAAATTTTTGAGGTTTCGTTTCGTTTTATCCAAACTTTACAAACTTTATTTGTCTTTTGAAATTTTAACGGCTTCGACTTAGTATAAGGAGTTGGGTCATTACAATTTATGTGTATTATTTTTTTCCCTCTTTTT

Coding sequence (CDS)

ATGAGCCTTGGAACCCGTGCACAAGAGGAAAAAAAAGAGAAAAGGGGGAAGGAAATCCTAGCCGCCGCACGCCGCCACAACCGTCGCCAGCCGCTCGCTCCGCAGCCACCGCGTGCTGAGTTCCAGCCACCCGCCCGAGTTCTCCCGCCAGCTGTCGCCACAAAATCAGCCGCATCGCCAGCCGCTTGCTCAACCACACCGTCGCACGTCGAGCGTCGGTCGTCGAAGCCTGCGAAGCCCAGCCGTGCCATGCCTCCGCAACCCGAGTCCCACACCCGTACTTGA

Protein sequence

MSLGTRAQEEKKEKRGKEILAAARRHNRRQPLAPQPPRAEFQPPARVLPPAVATKSAASPAACSTTPSHVERRSSKPAKPSRAMPPQPESHTRT

Homology

[Close]

BLAST of Cmc05g0135361 vs. NCBI nr
Match: KAA0064153.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-11
Identity = 51/79 (64.56%), Postives = 54/79 (68.35%), Query Frame = 0


Query: 21  AAARRHNRR-------QPLAPQPPRAEFQPPARVLPPAVATKSAASPAACSTTPSHVERR 80
           + +RRH  R       Q L PQPP AE Q PARV P A AT+S  SPAA S TPSHVERR
Sbjct: 718 SVSRRHRGRLRQQTFAQSLTPQPPHAELQLPARVFPLAAATRSVPSPAARSVTPSHVERR 777

Query: 81  SSKPAKPSRAMPPQPESHT 93
           SSKPAK SR  PPQPESHT
Sbjct: 778 SSKPAKLSRVAPPQPESHT 796

[Close]

BLAST of Cmc05g0135361 vs. NCBI nr
Match: KAA0059532.1 (hypothetical protein E6C27_scaffold518G00450 [Cucumis melo var. makuwa] >TYK14115.1 hypothetical protein E5676_scaffold1193G00350 [Cucumis melo var. makuwa])

HSP 1 Score: 67.0 bits (162), Expect = 9.8e-08
Identity = 46/69 (66.67%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 26  HNRRQPLAPQPPRAEFQPPARVLPPAVATKSAASPAACSTTPSHVERRSSKPAKPSRAMP 85
           H+RR P + +PP  EF    R LPP    +SAASPAA S TPSHVERRSSK AKPSR MP
Sbjct: 51  HSRRTPSSSRPP--EF---FRQLPP---QQSAASPAAQSATPSHVERRSSKSAKPSRIMP 110

Query: 86  PQPESHTRT 95
           PQPESHT T
Sbjct: 111 PQPESHTHT 111

[Close]

BLAST of Cmc05g0135361 vs. NCBI nr
Match: TYK23811.1 (hypothetical protein E5676_scaffold162G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 4.1e-06
Identity = 38/56 (67.86%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 39  AEFQPPARVLPPAVATKSAASPAACSTTPSHVERRSSKPAKPSRAMPPQPESHTRT 95
           A  QPPARVLP    T+SAAS  A   T SH E RSSKP KPSRA PPQ ESHTRT
Sbjct: 115 APLQPPARVLPLVATTRSAASLVARLATSSHAEHRSSKPVKPSRAAPPQLESHTRT 170

[Close]

BLAST of Cmc05g0135361 vs. ExPASy TrEMBL
Match: A0A5A7V7Q5 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G00770 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.1e-12
Identity = 51/79 (64.56%), Postives = 54/79 (68.35%), Query Frame = 0


Query: 21  AAARRHNRR-------QPLAPQPPRAEFQPPARVLPPAVATKSAASPAACSTTPSHVERR 80
           + +RRH  R       Q L PQPP AE Q PARV P A AT+S  SPAA S TPSHVERR
Sbjct: 718 SVSRRHRGRLRQQTFAQSLTPQPPHAELQLPARVFPLAAATRSVPSPAARSVTPSHVERR 777

Query: 81  SSKPAKPSRAMPPQPESHT 93
           SSKPAK SR  PPQPESHT
Sbjct: 778 SSKPAKLSRVAPPQPESHT 796

[Close]

BLAST of Cmc05g0135361 vs. ExPASy TrEMBL
Match: A0A5A7UUG5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1193G00350 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 4.8e-08
Identity = 46/69 (66.67%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 26  HNRRQPLAPQPPRAEFQPPARVLPPAVATKSAASPAACSTTPSHVERRSSKPAKPSRAMP 85
           H+RR P + +PP  EF    R LPP    +SAASPAA S TPSHVERRSSK AKPSR MP
Sbjct: 51  HSRRTPSSSRPP--EF---FRQLPP---QQSAASPAAQSATPSHVERRSSKSAKPSRIMP 110

Query: 86  PQPESHTRT 95
           PQPESHT T
Sbjct: 111 PQPESHTHT 111

[Close]

BLAST of Cmc05g0135361 vs. ExPASy TrEMBL
Match: A0A5D3DJG4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold162G00070 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.0e-06
Identity = 38/56 (67.86%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 39  AEFQPPARVLPPAVATKSAASPAACSTTPSHVERRSSKPAKPSRAMPPQPESHTRT 95
           A  QPPARVLP    T+SAAS  A   T SH E RSSKP KPSRA PPQ ESHTRT
Sbjct: 115 APLQPPARVLPLVATTRSAASLVARLATSSHAEHRSSKPVKPSRAAPPQLESHTRT 170

The following BLAST results are available for this feature:

BLAST of Cmc05g0135361 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0064153.1	1.5e-11	64.56	pol protein [Cucumis melo var. makuwa]	[more]
KAA0059532.1	9.8e-08	66.67	hypothetical protein E6C27_scaffold518G00450 [Cucumis melo var. makuwa] >TYK1411...	[more]
TYK23811.1	4.1e-06	67.86	hypothetical protein E5676_scaffold162G00070 [Cucumis melo var. makuwa]	[more]

BLAST of Cmc05g0135361 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc05g0135361 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V7Q5	7.1e-12	64.56	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G00770 PE...	[more]
A0A5A7UUG5	4.8e-08	66.67	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DJG4	2.0e-06	67.86	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Cmc05g0135361 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc05g0135361.1	Cmc05g0135361.1	mRNA