Cmc05g0135281 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc05g0135281
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr05: 17371566 .. 17372135 (+)
RNA-Seq Expression	Cmc05g0135281
Synteny	Cmc05g0135281

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGTCTTTGCATTGATTACAGAGAGCTGAATAAGGTGATAGTCAAGAACCGCTATCCATTACCCATAATTGATGATTTGTTTGATCAGTTGCAAGGAGCCATTGTTTTCTCTAAGATTTGTTTAGGTTCAGGATATGACCGGTTGAGGATTAGAGACAGTGATATTCCTAAGATTGCTTTTTGTTTCAGATATAAACATTATGAGTTCATTGTAATGTCCTTTGGCTTGACCAATGTTCCTGCTGTATTTATGGATCTAATGAACAGGGTATTTAAGGATGTCTTAGACACTTTTGTTATAGTTTTTATTGATGACATCTTGGTCTACTCCAAGAAAGAGGCGGAGCATGGGGAGCATTTGCATCAAGTTTGGGAGACTCTTCGAGCCAATAAGCTATATGCTAAGTTTTCTAAGTGTGAGGTTTGGCTGAAGAAGGCATCTTTTCTTAGCCATGTAGTATCTAGTGAGGGAGTCTCTGTAGACCCAACGAAGATTGAAGCTGTTACTAGTTTGCCTCGACCCTCTACAGTAAGTGAAGTTCGTAGTTTTCTGGGCTTAGCAGGTTAA

mRNA sequence

ATGCGTCTTTGCATTGATTACAGAGAGCTGAATAAGGTGATAGTCAAGAACCGCTATCCATTACCCATAATTGATGATTTGTTTGATCAGTTGCAAGGAGCCATTGTTTTCTCTAAGATTTGTTTAGGTTCAGGATATGACCGGTTGAGGATTAGAGACAGTGATATTCCTAAGATTGCTTTTTGTTTCAGATATAAACATTATGAGTTCATTGTAATGTCCTTTGGCTTGACCAATGTTCCTGCTGTATTTATGGATCTAATGAACAGGGTATTTAAGGATGTCTTAGACACTTTTGTTATAGTTTTTATTGATGACATCTTGGTCTACTCCAAGAAAGAGGCGGAGCATGGGGAGCATTTGCATCAAGTTTGGGAGACTCTTCGAGCCAATAAGCTATATGCTAAGTTTTCTAAGTGTGAGGTTTGGCTGAAGAAGGCATCTTTTCTTAGCCATGTAGTATCTAGTGAGGGAGTCTCTGTAGACCCAACGAAGATTGAAGCTGTTACTAGTTTGCCTCGACCCTCTACAGTAAGTGAAGTTCGTAGTTTTCTGGGCTTAGCAGGTTAA

Coding sequence (CDS)

ATGCGTCTTTGCATTGATTACAGAGAGCTGAATAAGGTGATAGTCAAGAACCGCTATCCATTACCCATAATTGATGATTTGTTTGATCAGTTGCAAGGAGCCATTGTTTTCTCTAAGATTTGTTTAGGTTCAGGATATGACCGGTTGAGGATTAGAGACAGTGATATTCCTAAGATTGCTTTTTGTTTCAGATATAAACATTATGAGTTCATTGTAATGTCCTTTGGCTTGACCAATGTTCCTGCTGTATTTATGGATCTAATGAACAGGGTATTTAAGGATGTCTTAGACACTTTTGTTATAGTTTTTATTGATGACATCTTGGTCTACTCCAAGAAAGAGGCGGAGCATGGGGAGCATTTGCATCAAGTTTGGGAGACTCTTCGAGCCAATAAGCTATATGCTAAGTTTTCTAAGTGTGAGGTTTGGCTGAAGAAGGCATCTTTTCTTAGCCATGTAGTATCTAGTGAGGGAGTCTCTGTAGACCCAACGAAGATTGAAGCTGTTACTAGTTTGCCTCGACCCTCTACAGTAAGTGAAGTTCGTAGTTTTCTGGGCTTAGCAGGTTAA

Protein sequence

MRLCIDYRELNKVIVKNRYPLPIIDDLFDQLQGAIVFSKICLGSGYDRLRIRDSDIPKIAFCFRYKHYEFIVMSFGLTNVPAVFMDLMNRVFKDVLDTFVIVFIDDILVYSKKEAEHGEHLHQVWETLRANKLYAKFSKCEVWLKKASFLSHVVSSEGVSVDPTKIEAVTSLPRPSTVSEVRSFLGLAG

Homology

[Close]

BLAST of Cmc05g0135281 vs. NCBI nr
Match: KAA0062264.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 336.3 bits (861), Expect = 1.7e-88
Identity = 169/180 (93.89%), Postives = 170/180 (94.44%), Query Frame = 0


Query: 9   ELNKVIVKNRYPLPIIDDLFDQLQGAIVFSKICLGSGYDRLRIRDSDIPKIAFCFRYKHY 68
           ELNKVIVKN YPLPIIDDLFDQLQGA VFSK  LGSGYDRLRIRDSDIPKIAFCFRY+HY
Sbjct: 256 ELNKVIVKNHYPLPIIDDLFDQLQGATVFSKNGLGSGYDRLRIRDSDIPKIAFCFRYRHY 315

Query: 69  EFIVMSFGLTNVPAVFMDLMNRVFKDVLDTFVIVFIDDILVYSKKEAEHGEHLHQVWETL 128
           EFIVMSFGLTN PAVFMDLMNRVFKD LDTFVIVFIDDILVYSKKEAEHGEHLH VWETL
Sbjct: 316 EFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKKEAEHGEHLHHVWETL 375

Query: 129 RANKLYAKFSKCEVWLKKASFLSHVVSSEGVSVDPTKIEAVTSLPRPSTVSEVRSFLGLA 188
           RANKLYAKFSKCEVWLKKASFLSHVVSSEGVSVDPTKIEA TS PRPSTVSEV SFLGLA
Sbjct: 376 RANKLYAKFSKCEVWLKKASFLSHVVSSEGVSVDPTKIEADTSFPRPSTVSEVCSFLGLA 435

[Close]

BLAST of Cmc05g0135281 vs. NCBI nr
Match: KAA0037906.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 323.6 bits (828), Expect = 1.2e-84
Identity = 161/189 (85.19%), Postives = 169/189 (89.42%), Query Frame = 0


Query: 1   MRLCIDYRELNKVIVKNRYPLPIIDDLFDQLQGAIVFSKICLGSGYDRLRIRDSDIPKIA 60
           MRLCIDYRELNKV VKNRYPLP IDDLFDQLQGA VFSKI L SGY +LRIRD DIPK A
Sbjct: 598 MRLCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 657

Query: 61  FCFRYKHYEFIVMSFGLTNVPAVFMDLMNRVFKDVLDTFVIVFIDDILVYSKKEAEHGEH 120
           FC RY HYEF+VMSFGLTN PAVFMDLMNRVFKD LD+FVIVFIDDIL+YSK EAEH EH
Sbjct: 658 FCSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 717

Query: 121 LHQVWETLRANKLYAKFSKCEVWLKKASFLSHVVSSEGVSVDPTKIEAVTSLPRPSTVSE 180
           LHQV ETLRANKLYAKFSKCE WL+K +FL HVVSSEGVSVDP KIEAVT+ PRPSTVSE
Sbjct: 718 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 777

Query: 181 VRSFLGLAG 190
           +RSFLGLAG
Sbjct: 778 IRSFLGLAG 786

[Close]

BLAST of Cmc05g0135281 vs. NCBI nr
Match: KAA0057168.1 (pol protein [Cucumis melo var. makuwa] >TYK27151.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 322.0 bits (824), Expect = 3.4e-84
Identity = 162/189 (85.71%), Postives = 168/189 (88.89%), Query Frame = 0


Query: 1   MRLCIDYRELNKVIVKNRYPLPIIDDLFDQLQGAIVFSKICLGSGYDRLRIRDSDIPKIA 60
           M LCIDYRELNKV VKNRYPLP IDDLFDQLQGAIVFSKI L SGY +LRIRDSDIPK  
Sbjct: 389 MHLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAIVFSKIDLRSGYHQLRIRDSDIPKTT 448

Query: 61  FCFRYKHYEFIVMSFGLTNVPAVFMDLMNRVFKDVLDTFVIVFIDDILVYSKKEAEHGEH 120
           FC RY HYEFIVMSFGLTN PAVFMDLMNRVFKD LD+FVIVFIDDIL+YSK EAEH EH
Sbjct: 449 FCSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 508

Query: 121 LHQVWETLRANKLYAKFSKCEVWLKKASFLSHVVSSEGVSVDPTKIEAVTSLPRPSTVSE 180
           L QV ETLRAN+LYAKFSKCE WLKK SFL HVVSSEGVSVDP KIEAVT+ PRPSTVSE
Sbjct: 509 LRQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 568

Query: 181 VRSFLGLAG 190
           +RSFLGLAG
Sbjct: 569 IRSFLGLAG 577

[Close]

BLAST of Cmc05g0135281 vs. NCBI nr
Match: TYK01306.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 321.6 bits (823), Expect = 4.5e-84
Identity = 162/189 (85.71%), Postives = 169/189 (89.42%), Query Frame = 0


Query: 1   MRLCIDYRELNKVIVKNRYPLPIIDDLFDQLQGAIVFSKICLGSGYDRLRIRDSDIPKIA 60
           MRLCIDYRELNKV VKNRYPLP IDDLFDQLQGA VFSKI L SGY +LRIRDSDIPK A
Sbjct: 601 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 660

Query: 61  FCFRYKHYEFIVMSFGLTNVPAVFMDLMNRVFKDVLDTFVIVFIDDILVYSKKEAEHGEH 120
           F  RY HYEFIVMSFGLTN PAVFMDLMNRVFKD LD+FVIVFIDDIL+YSK EAEH EH
Sbjct: 661 FRLRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 720

Query: 121 LHQVWETLRANKLYAKFSKCEVWLKKASFLSHVVSSEGVSVDPTKIEAVTSLPRPSTVSE 180
           LHQV ETLRANKLYAKFSKCE WL+K +FL HVVSSEGVSVDP KIEAVT+ PRPSTVSE
Sbjct: 721 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 780

Query: 181 VRSFLGLAG 190
           +RSFLGLAG
Sbjct: 781 IRSFLGLAG 789

[Close]

BLAST of Cmc05g0135281 vs. NCBI nr
Match: TYK05193.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 320.9 bits (821), Expect = 7.6e-84
Identity = 161/189 (85.19%), Postives = 169/189 (89.42%), Query Frame = 0


Query: 1   MRLCIDYRELNKVIVKNRYPLPIIDDLFDQLQGAIVFSKICLGSGYDRLRIRDSDIPKIA 60
           MRLCIDYRELNKV VKNRYPLP IDDLFDQLQGA VFSKI L SGY +LRIRD DIPK A
Sbjct: 684 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 743

Query: 61  FCFRYKHYEFIVMSFGLTNVPAVFMDLMNRVFKDVLDTFVIVFIDDILVYSKKEAEHGEH 120
           F  RY HYEF+VMSFGLTN PAVFMDLMNRVFKD LD+FVIVFIDDIL+YSK EAEH EH
Sbjct: 744 FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 803

Query: 121 LHQVWETLRANKLYAKFSKCEVWLKKASFLSHVVSSEGVSVDPTKIEAVTSLPRPSTVSE 180
           LHQV ETLRANKLYAKFSKCE WL+K +FL HVVSSEGVSVDPTKIEAVT+ PRPSTVSE
Sbjct: 804 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPTKIEAVTNWPRPSTVSE 863

Query: 181 VRSFLGLAG 190
           +RSFLGLAG
Sbjct: 864 IRSFLGLAG 872

[Close]

BLAST of Cmc05g0135281 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 3.4e-34
Identity = 68/188 (36.17%), Postives = 114/188 (60.64%), Query Frame = 0


Query: 2   RLCIDYRELNKVIVKNRYPLPIIDDLFDQLQGAIVFSKICLGSGYDRLRIRDSDIPKIAF 61
           R+ IDYR+LN++ + +RYP+P +D++  +L     F+ I L  G+ ++ + +  I K AF
Sbjct: 262 RVVIDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAF 321

Query: 62  CFRYKHYEFIVMSFGLTNVPAVFMDLMNRVFKDVLDTFVIVFIDDILVYSKKEAEHGEHL 121
             +  HYE++ M FGL N PA F   MN + + +L+   +V++DDI+++S    EH   +
Sbjct: 322 STKSGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSI 381

Query: 122 HQVWETLRANKLYAKFSKCEVWLKKASFLSHVVSSEGVSVDPTKIEAVTSLPRPSTVSEV 181
             V+  L    L  +  KCE   K+A+FL H+V+ +G+  +P K++A+ S P P+   E+
Sbjct: 382 QLVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEI 441

Query: 182 RSFLGLAG 190
           R+FLGL G
Sbjct: 442 RAFLGLTG 449

[Close]

BLAST of Cmc05g0135281 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 4.9e-33
Identity = 68/188 (36.17%), Postives = 114/188 (60.64%), Query Frame = 0


Query: 2   RLCIDYRELNKVIVKNRYPLPIIDDLFDQLQGAIVFSKICLGSGYDRLRIRDSDIPKIAF 61
           R+ IDYR+LN++ V +R+P+P +D++  +L     F+ I L  G+ ++ +    + K AF
Sbjct: 263 RIVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAF 322

Query: 62  CFRYKHYEFIVMSFGLTNVPAVFMDLMNRVFKDVLDTFVIVFIDDILVYSKKEAEHGEHL 121
             ++ HYE++ M FGL N PA F   MN + + +L+   +V++DDI+V+S    EH + L
Sbjct: 323 STKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSL 382

Query: 122 HQVWETLRANKLYAKFSKCEVWLKKASFLSHVVSSEGVSVDPTKIEAVTSLPRPSTVSEV 181
             V+E L    L  +  KCE   ++ +FL HV++ +G+  +P KIEA+   P P+   E+
Sbjct: 383 GLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEI 442

Query: 182 RSFLGLAG 190
           ++FLGL G
Sbjct: 443 KAFLGLTG 450

[Close]

BLAST of Cmc05g0135281 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 129.8 bits (325), Expect = 3.3e-29
Identity = 68/186 (36.56%), Postives = 104/186 (55.91%), Query Frame = 0


Query: 2   RLCIDYRELNKVIVKNRYPLPIIDDLFDQLQGAIVFSKICLGSGYDRLRIRDSDIPKIAF 61
           RLC+DYR LNK  + + +PLP ID+L  ++  A +F+ + L SGY ++ +   D  K AF
Sbjct: 647 RLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAF 706

Query: 62  CFRYKHYEFIVMSFGLTNVPAVFMDLMNRVFKDVLDTFVIVFIDDILVYSKKEAEHGEHL 121
                 YE+ VM FGL N P+ F   M   F+D+   FV V++DDIL++S+   EH +HL
Sbjct: 707 VTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHL 766

Query: 122 HQVWETLRANKLYAKFSKCEVWLKKASFLSHVVSSEGVSVDPTKIEAVTSLPRPSTVSEV 181
             V E L+   L  K  KC+   ++  FL + +  + ++    K  A+   P P TV + 
Sbjct: 767 DTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQA 826

Query: 182 RSFLGL 188
           + FLG+
Sbjct: 827 QRFLGM 830

[Close]

BLAST of Cmc05g0135281 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 129.8 bits (325), Expect = 3.3e-29
Identity = 68/186 (36.56%), Postives = 104/186 (55.91%), Query Frame = 0


Query: 2   RLCIDYRELNKVIVKNRYPLPIIDDLFDQLQGAIVFSKICLGSGYDRLRIRDSDIPKIAF 61
           RLC+DYR LNK  + + +PLP ID+L  ++  A +F+ + L SGY ++ +   D  K AF
Sbjct: 673 RLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAF 732

Query: 62  CFRYKHYEFIVMSFGLTNVPAVFMDLMNRVFKDVLDTFVIVFIDDILVYSKKEAEHGEHL 121
                 YE+ VM FGL N P+ F   M   F+D+   FV V++DDIL++S+   EH +HL
Sbjct: 733 VTPSGKYEYTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHL 792

Query: 122 HQVWETLRANKLYAKFSKCEVWLKKASFLSHVVSSEGVSVDPTKIEAVTSLPRPSTVSEV 181
             V E L+   L  K  KC+   ++  FL + +  + ++    K  A+   P P TV + 
Sbjct: 793 DTVLERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQA 852

Query: 182 RSFLGL 188
           + FLG+
Sbjct: 853 QRFLGM 856

[Close]

BLAST of Cmc05g0135281 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 4.3e-29
Identity = 62/186 (33.33%), Postives = 109/186 (58.60%), Query Frame = 0


Query: 1   MRLCIDYRELNKVIVKNRYPLPIIDDLFDQLQGAIVFSKICLGSGYDRLRIRDSDIPKIA 60
           +R+ +DY+ LNK +  N YPLP+I+ L  ++QG+ +F+K+ L S Y  +R+R  D  K+A
Sbjct: 462 LRMVVDYKPLNKYVKPNIYPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLA 521

Query: 61  FCFRYKHYEFIVMSFGLTNVPAVFMDLMNRVFKDVLDTFVIVFIDDILVYSKKEAEHGEH 120
           F      +E++VM +G++  PA F   +N +  +  ++ V+ ++DDIL++SK E+EH +H
Sbjct: 522 FRCPRGVFEYLVMPYGISTAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKH 581

Query: 121 LHQVWETLRANKLYAKFSKCEVWLKKASFLSHVVSSEGVSVDPTKIEAVTSLPRPSTVSE 180
           +  V + L+   L    +KCE    +  F+ + +S +G +     I+ V    +P    E
Sbjct: 582 VKDVLQKLKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKE 641

Query: 181 VRSFLG 187
           +R FLG
Sbjct: 642 LRQFLG 647

[Close]

BLAST of Cmc05g0135281 vs. ExPASy TrEMBL
Match: A0A5A7V4N7 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold679G00340 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 8.5e-89
Identity = 169/180 (93.89%), Postives = 170/180 (94.44%), Query Frame = 0


Query: 9   ELNKVIVKNRYPLPIIDDLFDQLQGAIVFSKICLGSGYDRLRIRDSDIPKIAFCFRYKHY 68
           ELNKVIVKN YPLPIIDDLFDQLQGA VFSK  LGSGYDRLRIRDSDIPKIAFCFRY+HY
Sbjct: 256 ELNKVIVKNHYPLPIIDDLFDQLQGATVFSKNGLGSGYDRLRIRDSDIPKIAFCFRYRHY 315

Query: 69  EFIVMSFGLTNVPAVFMDLMNRVFKDVLDTFVIVFIDDILVYSKKEAEHGEHLHQVWETL 128
           EFIVMSFGLTN PAVFMDLMNRVFKD LDTFVIVFIDDILVYSKKEAEHGEHLH VWETL
Sbjct: 316 EFIVMSFGLTNAPAVFMDLMNRVFKDFLDTFVIVFIDDILVYSKKEAEHGEHLHHVWETL 375

Query: 129 RANKLYAKFSKCEVWLKKASFLSHVVSSEGVSVDPTKIEAVTSLPRPSTVSEVRSFLGLA 188
           RANKLYAKFSKCEVWLKKASFLSHVVSSEGVSVDPTKIEA TS PRPSTVSEV SFLGLA
Sbjct: 376 RANKLYAKFSKCEVWLKKASFLSHVVSSEGVSVDPTKIEADTSFPRPSTVSEVCSFLGLA 435

[Close]

BLAST of Cmc05g0135281 vs. ExPASy TrEMBL
Match: A0A5A7T6U3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G00780 PE=4 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 5.7e-85
Identity = 161/189 (85.19%), Postives = 169/189 (89.42%), Query Frame = 0


Query: 1   MRLCIDYRELNKVIVKNRYPLPIIDDLFDQLQGAIVFSKICLGSGYDRLRIRDSDIPKIA 60
           MRLCIDYRELNKV VKNRYPLP IDDLFDQLQGA VFSKI L SGY +LRIRD DIPK A
Sbjct: 598 MRLCIDYRELNKVTVKNRYPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 657

Query: 61  FCFRYKHYEFIVMSFGLTNVPAVFMDLMNRVFKDVLDTFVIVFIDDILVYSKKEAEHGEH 120
           FC RY HYEF+VMSFGLTN PAVFMDLMNRVFKD LD+FVIVFIDDIL+YSK EAEH EH
Sbjct: 658 FCSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 717

Query: 121 LHQVWETLRANKLYAKFSKCEVWLKKASFLSHVVSSEGVSVDPTKIEAVTSLPRPSTVSE 180
           LHQV ETLRANKLYAKFSKCE WL+K +FL HVVSSEGVSVDP KIEAVT+ PRPSTVSE
Sbjct: 718 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 777

Query: 181 VRSFLGLAG 190
           +RSFLGLAG
Sbjct: 778 IRSFLGLAG 786

[Close]

BLAST of Cmc05g0135281 vs. ExPASy TrEMBL
Match: A0A5A7UPX4 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1920G00300 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 1.7e-84
Identity = 162/189 (85.71%), Postives = 168/189 (88.89%), Query Frame = 0


Query: 1   MRLCIDYRELNKVIVKNRYPLPIIDDLFDQLQGAIVFSKICLGSGYDRLRIRDSDIPKIA 60
           M LCIDYRELNKV VKNRYPLP IDDLFDQLQGAIVFSKI L SGY +LRIRDSDIPK  
Sbjct: 389 MHLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGAIVFSKIDLRSGYHQLRIRDSDIPKTT 448

Query: 61  FCFRYKHYEFIVMSFGLTNVPAVFMDLMNRVFKDVLDTFVIVFIDDILVYSKKEAEHGEH 120
           FC RY HYEFIVMSFGLTN PAVFMDLMNRVFKD LD+FVIVFIDDIL+YSK EAEH EH
Sbjct: 449 FCSRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 508

Query: 121 LHQVWETLRANKLYAKFSKCEVWLKKASFLSHVVSSEGVSVDPTKIEAVTSLPRPSTVSE 180
           L QV ETLRAN+LYAKFSKCE WLKK SFL HVVSSEGVSVDP KIEAVT+ PRPSTVSE
Sbjct: 509 LRQVLETLRANRLYAKFSKCEFWLKKVSFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 568

Query: 181 VRSFLGLAG 190
           +RSFLGLAG
Sbjct: 569 IRSFLGLAG 577

[Close]

BLAST of Cmc05g0135281 vs. ExPASy TrEMBL
Match: A0A5D3BSV9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold827G00060 PE=4 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.2e-84
Identity = 162/189 (85.71%), Postives = 169/189 (89.42%), Query Frame = 0


Query: 1   MRLCIDYRELNKVIVKNRYPLPIIDDLFDQLQGAIVFSKICLGSGYDRLRIRDSDIPKIA 60
           MRLCIDYRELNKV VKNRYPLP IDDLFDQLQGA VFSKI L SGY +LRIRDSDIPK A
Sbjct: 601 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 660

Query: 61  FCFRYKHYEFIVMSFGLTNVPAVFMDLMNRVFKDVLDTFVIVFIDDILVYSKKEAEHGEH 120
           F  RY HYEFIVMSFGLTN PAVFMDLMNRVFKD LD+FVIVFIDDIL+YSK EAEH EH
Sbjct: 661 FRLRYGHYEFIVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 720

Query: 121 LHQVWETLRANKLYAKFSKCEVWLKKASFLSHVVSSEGVSVDPTKIEAVTSLPRPSTVSE 180
           LHQV ETLRANKLYAKFSKCE WL+K +FL HVVSSEGVSVDP KIEAVT+ PRPSTVSE
Sbjct: 721 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 780

Query: 181 VRSFLGLAG 190
           +RSFLGLAG
Sbjct: 781 IRSFLGLAG 789

[Close]

BLAST of Cmc05g0135281 vs. ExPASy TrEMBL
Match: A0A5D3BZN1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1415G00670 PE=4 SV=1)

HSP 1 Score: 320.9 bits (821), Expect = 3.7e-84
Identity = 161/189 (85.19%), Postives = 169/189 (89.42%), Query Frame = 0


Query: 1   MRLCIDYRELNKVIVKNRYPLPIIDDLFDQLQGAIVFSKICLGSGYDRLRIRDSDIPKIA 60
           MRLCIDYRELNKV VKNRYPLP IDDLFDQLQGA VFSKI L SGY +LRIRD DIPK A
Sbjct: 684 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 743

Query: 61  FCFRYKHYEFIVMSFGLTNVPAVFMDLMNRVFKDVLDTFVIVFIDDILVYSKKEAEHGEH 120
           F  RY HYEF+VMSFGLTN PAVFMDLMNRVFKD LD+FVIVFIDDIL+YSK EAEH EH
Sbjct: 744 FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 803

Query: 121 LHQVWETLRANKLYAKFSKCEVWLKKASFLSHVVSSEGVSVDPTKIEAVTSLPRPSTVSE 180
           LHQV ETLRANKLYAKFSKCE WL+K +FL HVVSSEGVSVDPTKIEAVT+ PRPSTVSE
Sbjct: 804 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPTKIEAVTNWPRPSTVSE 863

Query: 181 VRSFLGLAG 190
           +RSFLGLAG
Sbjct: 864 IRSFLGLAG 872

[Close]

BLAST of Cmc05g0135281 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 56.6 bits (135), Expect = 2.5e-08
Identity = 28/72 (38.89%), Postives = 40/72 (55.56%), Query Frame = 0


Query: 120 HLHQVWETLRANKLYAKFSKCEVWLKKASFLS--HVVSSEGVSVDPTKIEAVTSLPRPST 179
           HL  V +    ++ YA   KC     + ++L   H++S EGVS DP K+EA+   P P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 180 VSEVRSFLGLAG 190
            +E+R FLGL G
Sbjct: 63  TTELRGFLGLTG 74

The following BLAST results are available for this feature:

BLAST of Cmc05g0135281 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0062264.1	1.7e-88	93.89	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0037906.1	1.2e-84	85.19	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0057168.1	3.4e-84	85.71	pol protein [Cucumis melo var. makuwa] >TYK27151.1 pol protein [Cucumis melo var...	[more]
TYK01306.1	4.5e-84	85.71	pol protein [Cucumis melo var. makuwa]	[more]
TYK05193.1	7.6e-84	85.19	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc05g0135281 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	3.4e-34	36.17	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	4.9e-33	36.17	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q99315	3.3e-29	36.56	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	3.3e-29	36.56	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P0CT41	4.3e-29	33.33	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc05g0135281 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V4N7	8.5e-89	93.89	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7T6U3	5.7e-85	85.19	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36...	[more]
A0A5A7UPX4	1.7e-84	85.71	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1920G00300 P...	[more]
A0A5D3BSV9	2.2e-84	85.71	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold82...	[more]
A0A5D3BZN1	3.7e-84	85.19	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14...	[more]

BLAST of Cmc05g0135281 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	2.5e-08	38.89	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..79 e-value: 1.4E-54 score: 186.7
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..187
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 2..187
None	No IPR available	CDD	cd01647	RT_LTR	coord: 2..154 e-value: 1.40561E-65 score: 197.433
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 3..150 e-value: 2.0E-17 score: 63.4
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 19..154 e-value: 1.4E-54 score: 186.7
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc05g0135281.1	Cmc05g0135281.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding