Cmc05g0134231 (gene) Melon (Charmono) v1.1

Overview
NameCmc05g0134231
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionComplex1_LYR domain-containing protein
LocationCMiso1.1chr05: 15669697 .. 15670789 (-)
RNA-Seq ExpressionCmc05g0134231
SyntenyCmc05g0134231
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTGAAAATGAATTCAGAAGCCTTGCAGGTAGCTAAGGCCTATCGCCAGCTTCTCAAAGCTGTAAAGAAACATATTGGAAAGGAAGAGAGCAAGAAGCATTTTGTGGACTATGTGGCTCAAAAGTTGAGGGATAAATCCATACTTTCAAAACCCCACTTTGTTCAACAGGAAATCAAACTTGCTCGGCATTACACATTTCTACTTAACAGTATGCACCATCAAAAGGCAATAAGACTTCACTCTCAGCTCAGATCACGAAGAAACAAACTTTTCTTTCTTCCTCATTTGATCTTGTTTACAATTGTAATTGACATGGGCTATGATGCAGGACTTGCTGTTCTCGTACAACATTGCTGTTGATCGTTCAGATGAAATGAAGCGAATATTGGGGAAGTCTGCAGCAAGTGTGGGGCTTTCACTTCCTGAGGTTTATCAAACCTGATGCCCTGTGGTTGTTTGATTAAGAAGAAGCACTTTTTTCCCCTATCAAAGAAGAATAAGCACTTCGATGAGCTGCCAACTTGCCAGCAGACTTACATATTGTTGATTTCTTCTACCTTTTGATGCATCAATTCTATGCGCATGGAAAGAAATGAAGGCTTACTGGACACTTTTATCAAAAGGTGAGATATTTCCTTTTATTAGTACTCCCGAGGGTGAATTGAAGCATTCTGGTGTGATGTTTGTTTCATTTCCAATTAATATAAACTTTAATAATGTGATAAGGAGCTGCTGAGTTTTGATGGAAAGCACTTTTACTTTACTTTATTACCATTGTCCAGAAATAAATGTTACATCTTGAAAGACATTGAGTATCAGTATGGAGGTTTTTAAGAAGTTCTTTTTCCATTAGAAGTATTGGAAGTATTTGCACCTTTCTATAAGTCTTATAAAGTATTTAGTCTCGGTGATGCTTTGGGGATTGCACAGCACCATGATGCAGTGACTGGTACTGCTAAGCAACATACTACAAATGACTTTGTGTCTCTTTTTTTTTTTTCCTTTGAAAGGTCATATATGGTGGACTTATGGTCGCAAGTGGAGGAGAAGAATTCACAATCCGGCTACTTCTTAAAGTATGTTGTATGCGTC

mRNA sequence

TTTGAAAATGAATTCAGAAGCCTTGCAGGTAGCTAAGGCCTATCGCCAGCTTCTCAAAGCTGTAAAGAAACATATTGGAAAGGAAGAGAGCAAGAAGCATTTTGTGGACTATGTGGCTCAAAAGTTGAGGGATAAATCCATACTTTCAAAACCCCACTTTGACTTGCTGTTCTCGTACAACATTGCTGTTGATCGTTCAGATGAAATGAAGCGAATATTGGGGAAGTCTGCAGCAAGTGTGGGGCTTTCACTTCCTGAGGTTTATCAAACCTGATGCCCTGTGGTTGTTTGATTAAGAAGAAGCACTTTTTTCCCCTATCAAAGAAGAATAAGCACTTCGATGAGCTGCCAACTTGCCAGCAGACTTACATATTGTTGATTTCTTCTACCTTTTGATGCATCAATTCTATGCGCATGGAAAGAAATGAAGGCTTACTGGACACTTTTATCAAAAGGTCATATATGGTGGACTTATGGTCGCAAGTGGAGGAGAAGAATTCACAATCCGGCTACTTCTTAAAGTATGTTGTATGCGTC

Coding sequence (CDS)

ATGAATTCAGAAGCCTTGCAGGTAGCTAAGGCCTATCGCCAGCTTCTCAAAGCTGTAAAGAAACATATTGGAAAGGAAGAGAGCAAGAAGCATTTTGTGGACTATGTGGCTCAAAAGTTGAGGGATAAATCCATACTTTCAAAACCCCACTTTGACTTGCTGTTCTCGTACAACATTGCTGTTGATCGTTCAGATGAAATGAAGCGAATATTGGGGAAGTCTGCAGCAAGTGTGGGGCTTTCACTTCCTGAGGTTTATCAAACCTGA

Protein sequence

MNSEALQVAKAYRQLLKAVKKHIGKEESKKHFVDYVAQKLRDKSILSKPHFDLLFSYNIAVDRSDEMKRILGKSAASVGLSLPEVYQT
Homology
BLAST of Cmc05g0134231 vs. NCBI nr
Match: XP_004144434.1 (uncharacterized protein LOC101204721 [Cucumis sativus] >XP_031739411.1 uncharacterized protein LOC101204721 [Cucumis sativus] >KGN58453.1 hypothetical protein Csa_001238 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 1.4e-32
Identity = 82/109 (75.23%), Postives = 84/109 (77.06%), Query Frame = 0

Query: 1   MNSEALQVAKAYRQLLKAVKKHIGKEESKKHFVDYVAQKLRDKSILSKPHF--------- 60
           MNSEALQVAK YRQLLKAVKKH+GKEESKKHFVDYVAQK RDKSILSKPH          
Sbjct: 1   MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLAR 60

Query: 61  -------------DLLFSYNIAVDRSDEMKRILGKSAASVGLSLPEVYQ 88
                        DLLFSYNIAVDRSDEMKR+LGKSAASVGLSLPEVYQ
Sbjct: 61  DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQ 109

BLAST of Cmc05g0134231 vs. NCBI nr
Match: KAA0039302.1 (Complex1_LYR domain-containing protein [Cucumis melo var. makuwa] >TYK00486.1 Complex1_LYR domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 148.3 bits (373), Expect = 3.1e-32
Identity = 82/102 (80.39%), Postives = 83/102 (81.37%), Query Frame = 0

Query: 1   MNSEALQVAKAYRQLLKAVKKHIGKEESKKHFVDYVAQKLRDKSILSKPH---------- 60
           MNSEALQVAKAYRQLLKAVKKHIGKEESKKHFVDYVAQK RDKSILSKPH          
Sbjct: 1   MNSEALQVAKAYRQLLKAVKKHIGKEESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLAR 60

Query: 61  -------FDLLFSYNIAVDRSDEMKRILGKSAASVGLSLPEV 86
                   DLLFSYNIAVDRSDEMKRILGKSAASVGLSLPE+
Sbjct: 61  DYTFLLNSDLLFSYNIAVDRSDEMKRILGKSAASVGLSLPEI 102

BLAST of Cmc05g0134231 vs. NCBI nr
Match: XP_022933120.1 (uncharacterized protein LOC111439884 [Cucurbita moschata] >XP_022933121.1 uncharacterized protein LOC111439884 [Cucurbita moschata])

HSP 1 Score: 143.7 bits (361), Expect = 7.7e-31
Identity = 79/109 (72.48%), Postives = 82/109 (75.23%), Query Frame = 0

Query: 1   MNSEALQVAKAYRQLLKAVKKHIGKEESKKHFVDYVAQKLRDKSILSKPHF--------- 60
           MNSEALQVAK YRQLLKAVKKHIGKEE+KKHFVDYVAQK R+KS LSKPH          
Sbjct: 1   MNSEALQVAKVYRQLLKAVKKHIGKEENKKHFVDYVAQKFREKSTLSKPHSVQQKIKLAR 60

Query: 61  -------------DLLFSYNIAVDRSDEMKRILGKSAASVGLSLPEVYQ 88
                        DLLFSYNIA+DRSDEMKRILGKSAASVGL LPEVYQ
Sbjct: 61  DYTFLLNSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASVGLKLPEVYQ 109

BLAST of Cmc05g0134231 vs. NCBI nr
Match: XP_038889144.1 (uncharacterized protein LOC120079034 [Benincasa hispida])

HSP 1 Score: 141.7 bits (356), Expect = 2.9e-30
Identity = 79/109 (72.48%), Postives = 81/109 (74.31%), Query Frame = 0

Query: 1   MNSEALQVAKAYRQLLKAVKKHIGKEESKKHFVDYVAQKLRDKSILSKPHF--------- 60
           MNSEALQVAK YRQLLKAVK HIGKEESKKHFVDYVAQK RDK+ILSKPH          
Sbjct: 1   MNSEALQVAKVYRQLLKAVKNHIGKEESKKHFVDYVAQKFRDKTILSKPHSVQQEIKLAL 60

Query: 61  -------------DLLFSYNIAVDRSDEMKRILGKSAASVGLSLPEVYQ 88
                        DLLFSYNIAVDRS+EMKRILGKSAASVGL LPE YQ
Sbjct: 61  DYTFLLNSVHHQKDLLFSYNIAVDRSEEMKRILGKSAASVGLKLPEPYQ 109

BLAST of Cmc05g0134231 vs. NCBI nr
Match: XP_022967927.1 (uncharacterized protein LOC111467294 [Cucurbita maxima] >XP_022967928.1 uncharacterized protein LOC111467294 [Cucurbita maxima] >KAG6603158.1 hypothetical protein SDJN03_03767, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 141.7 bits (356), Expect = 2.9e-30
Identity = 78/109 (71.56%), Postives = 81/109 (74.31%), Query Frame = 0

Query: 1   MNSEALQVAKAYRQLLKAVKKHIGKEESKKHFVDYVAQKLRDKSILSKPHF--------- 60
           MNSEALQVAK YRQLLKAVK HIGKEE+KKHFVDYVAQK R+KS LSKPH          
Sbjct: 1   MNSEALQVAKVYRQLLKAVKNHIGKEENKKHFVDYVAQKFREKSTLSKPHSVQQKIKLAR 60

Query: 61  -------------DLLFSYNIAVDRSDEMKRILGKSAASVGLSLPEVYQ 88
                        DLLFSYNIA+DRSDEMKRILGKSAASVGL LPEVYQ
Sbjct: 61  DYTFLLNSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASVGLKLPEVYQ 109

BLAST of Cmc05g0134231 vs. ExPASy TrEMBL
Match: A0A0A0L9E2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G645910 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.8e-33
Identity = 82/109 (75.23%), Postives = 84/109 (77.06%), Query Frame = 0

Query: 1   MNSEALQVAKAYRQLLKAVKKHIGKEESKKHFVDYVAQKLRDKSILSKPHF--------- 60
           MNSEALQVAK YRQLLKAVKKH+GKEESKKHFVDYVAQK RDKSILSKPH          
Sbjct: 1   MNSEALQVAKVYRQLLKAVKKHVGKEESKKHFVDYVAQKFRDKSILSKPHSIQQEIKLAR 60

Query: 61  -------------DLLFSYNIAVDRSDEMKRILGKSAASVGLSLPEVYQ 88
                        DLLFSYNIAVDRSDEMKR+LGKSAASVGLSLPEVYQ
Sbjct: 61  DYTFLLNSVHHQKDLLFSYNIAVDRSDEMKRVLGKSAASVGLSLPEVYQ 109

BLAST of Cmc05g0134231 vs. ExPASy TrEMBL
Match: A0A5D3BQE5 (Complex1_LYR domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00940 PE=4 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 1.5e-32
Identity = 82/102 (80.39%), Postives = 83/102 (81.37%), Query Frame = 0

Query: 1   MNSEALQVAKAYRQLLKAVKKHIGKEESKKHFVDYVAQKLRDKSILSKPH---------- 60
           MNSEALQVAKAYRQLLKAVKKHIGKEESKKHFVDYVAQK RDKSILSKPH          
Sbjct: 1   MNSEALQVAKAYRQLLKAVKKHIGKEESKKHFVDYVAQKFRDKSILSKPHSVQQEIKLAR 60

Query: 61  -------FDLLFSYNIAVDRSDEMKRILGKSAASVGLSLPEV 86
                   DLLFSYNIAVDRSDEMKRILGKSAASVGLSLPE+
Sbjct: 61  DYTFLLNSDLLFSYNIAVDRSDEMKRILGKSAASVGLSLPEI 102

BLAST of Cmc05g0134231 vs. ExPASy TrEMBL
Match: A0A6J1EY92 (uncharacterized protein LOC111439884 OS=Cucurbita moschata OX=3662 GN=LOC111439884 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 3.7e-31
Identity = 79/109 (72.48%), Postives = 82/109 (75.23%), Query Frame = 0

Query: 1   MNSEALQVAKAYRQLLKAVKKHIGKEESKKHFVDYVAQKLRDKSILSKPHF--------- 60
           MNSEALQVAK YRQLLKAVKKHIGKEE+KKHFVDYVAQK R+KS LSKPH          
Sbjct: 1   MNSEALQVAKVYRQLLKAVKKHIGKEENKKHFVDYVAQKFREKSTLSKPHSVQQKIKLAR 60

Query: 61  -------------DLLFSYNIAVDRSDEMKRILGKSAASVGLSLPEVYQ 88
                        DLLFSYNIA+DRSDEMKRILGKSAASVGL LPEVYQ
Sbjct: 61  DYTFLLNSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASVGLKLPEVYQ 109

BLAST of Cmc05g0134231 vs. ExPASy TrEMBL
Match: A0A6J1HS51 (uncharacterized protein LOC111467294 OS=Cucurbita maxima OX=3661 GN=LOC111467294 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.4e-30
Identity = 78/109 (71.56%), Postives = 81/109 (74.31%), Query Frame = 0

Query: 1   MNSEALQVAKAYRQLLKAVKKHIGKEESKKHFVDYVAQKLRDKSILSKPHF--------- 60
           MNSEALQVAK YRQLLKAVK HIGKEE+KKHFVDYVAQK R+KS LSKPH          
Sbjct: 1   MNSEALQVAKVYRQLLKAVKNHIGKEENKKHFVDYVAQKFREKSTLSKPHSVQQKIKLAR 60

Query: 61  -------------DLLFSYNIAVDRSDEMKRILGKSAASVGLSLPEVYQ 88
                        DLLFSYNIA+DRSDEMKRILGKSAASVGL LPEVYQ
Sbjct: 61  DYTFLLNSVHHQKDLLFSYNIAIDRSDEMKRILGKSAASVGLKLPEVYQ 109

BLAST of Cmc05g0134231 vs. ExPASy TrEMBL
Match: A0A6J1C0V5 (uncharacterized protein LOC111006395 OS=Momordica charantia OX=3673 GN=LOC111006395 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.9e-27
Identity = 72/109 (66.06%), Postives = 80/109 (73.39%), Query Frame = 0

Query: 1   MNSEALQVAKAYRQLLKAVKKHIGKEESKKHFVDYVAQKLRDKSILSKPHF--------- 60
           M+SEALQVA+ YR+LLKAVK HIGKEESKKHFVDYVAQK R++S LS+PH          
Sbjct: 1   MSSEALQVARVYRELLKAVKNHIGKEESKKHFVDYVAQKFRERSGLSEPHSLQQKIKLAH 60

Query: 61  -------------DLLFSYNIAVDRSDEMKRILGKSAASVGLSLPEVYQ 88
                        DLLFSYNIA+DRS+EMKRILGKSAASVGL LPE YQ
Sbjct: 61  DYALLLNSVHHQKDLLFSYNIAIDRSEEMKRILGKSAASVGLRLPEAYQ 109

BLAST of Cmc05g0134231 vs. TAIR 10
Match: AT5G51960.1 (CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 45 Blast hits to 45 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 100.9 bits (250), Expect = 5.4e-22
Identity = 54/102 (52.94%), Postives = 67/102 (65.69%), Query Frame = 0

Query: 1   MNSEALQVAKAYRQLLKAVKKHIGKEESKKHFVDYVAQKLRDKSILSK------------ 60
           M+ E +  A+ YR LLKAV KH+GKE+ K HF+D+V Q+ R  +   K            
Sbjct: 1   MSGEVVLAARVYRDLLKAVVKHVGKEDHKSHFLDFVKQEFRKNANSEKINLARNYTYLLN 60

Query: 61  ---PHFDLLFSYNIAVDRSDEMKRILGKSAASVGLSLPEVYQ 88
               H DLLFSYNIAVDR++EMKR+L KSAASVGL LPEVY+
Sbjct: 61  SIHSHKDLLFSYNIAVDRTEEMKRVLNKSAASVGLRLPEVYE 102

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_004144434.11.4e-3275.23uncharacterized protein LOC101204721 [Cucumis sativus] >XP_031739411.1 uncharact... [more]
KAA0039302.13.1e-3280.39Complex1_LYR domain-containing protein [Cucumis melo var. makuwa] >TYK00486.1 Co... [more]
XP_022933120.17.7e-3172.48uncharacterized protein LOC111439884 [Cucurbita moschata] >XP_022933121.1 unchar... [more]
XP_038889144.12.9e-3072.48uncharacterized protein LOC120079034 [Benincasa hispida][more]
XP_022967927.12.9e-3071.56uncharacterized protein LOC111467294 [Cucurbita maxima] >XP_022967928.1 uncharac... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L9E26.8e-3375.23Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G645910 PE=4 SV=1[more]
A0A5D3BQE51.5e-3280.39Complex1_LYR domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN... [more]
A0A6J1EY923.7e-3172.48uncharacterized protein LOC111439884 OS=Cucurbita moschata OX=3662 GN=LOC1114398... [more]
A0A6J1HS511.4e-3071.56uncharacterized protein LOC111467294 OS=Cucurbita maxima OX=3661 GN=LOC111467294... [more]
A0A6J1C0V51.9e-2766.06uncharacterized protein LOC111006395 OS=Momordica charantia OX=3673 GN=LOC111006... [more]
Match NameE-valueIdentityDescription
AT5G51960.15.4e-2252.94CONTAINS InterPro DOMAIN/s: Complex 1 LYR protein (InterPro:IPR008011); Has 45 B... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35763COMPLEX 1 LYR-LIKE PROTEINcoord: 50..87
coord: 1..45

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc05g0134231.1Cmc05g0134231.1mRNA