Cmc05g0133911 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc05g0133911
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3/gypsy retrotransposon protein
Location	CMiso1.1chr05: 14838152 .. 14838844 (+)
RNA-Seq Expression	Cmc05g0133911
Synteny	Cmc05g0133911

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGACCCTCCCAGTACTGGCAATGCCCGACTTCAACTTGCCATTTGAGATCGAATCCGATGCATCAGGTTTTGGAGTAGGGGCAGTGTTGGTTCAGGCCAAGAGACCGATTGCCTACTTCAGCAAAGTCTTAAGTATGCGGGATCGAGCAAGACCAGTGTATGAACCAGAACTAATAGCAGTGGTGTGGGCTGTCCAACAATGGCGACCATATTTGTTGGGGAGAAAGTTCACAGTAAAGACGGACCAGAGATCACTTAAGTTTCTATTAGAACAAAGAGTAATACAACCGCAATACCAGCAATGGATCGCTAAGTTACTCGGCTATTCGTTTGAAGTACTATACAAGCCCGAATTGGAGAATAAAGCCGTCGATGCCCTGTCCAGAATGGGACCAACGTCACACTTGAACCAATTAACAGCCCCAGCCTTGTTGGATGTGGAAGTAATTCAAGAAGAAGTCAGAAAGGATCCAGCCCTACGAGAGATCATCATATTGATAGAAGAACAGGGAGTGGAAATCCCATATTATACTTGCCATCAAGGGATACTGAAGTTCAAGGGGAGACTGGTTCTATCCAAAACTTCTACATTGATTCCTACCATTATGCACACCTATCATGACTCGGTGTTTGGAGGACATTCAGGGTTCCTTAAAACATATAAAAGAATGGCTGGTGAATTGTATTAG

mRNA sequence

ATGATGACCCTCCCAGTACTGGCAATGCCCGACTTCAACTTGCCATTTGAGATCGAATCCGATGCATCAGGTTTTGGAGTAGGGGCAGTGTTGGTTCAGGCCAAGAGACCGATTGCCTACTTCAGCAAAGTCTTAAGTATGCGGGATCGAGCAAGACCAGTGTATGAACCAGAACTAATAGCAGTGGTGTGGGCTGTCCAACAATGGCGACCATATTTGTTGGGGAGAAAGTTCACAGTAAAGACGGACCAGAGATCACTTAAGTTTCTATTAGAACAAAGAGTAATACAACCGCAATACCAGCAATGGATCGCTAAGTTACTCGGCTATTCGTTTGAAGTACTATACAAGCCCGAATTGGAGAATAAAGCCGTCGATGCCCTGTCCAGAATGGGACCAACGTCACACTTGAACCAATTAACAGCCCCAGCCTTGTTGGATGTGGAAGTAATTCAAGAAGAAGTCAGAAAGGATCCAGCCCTACGAGAGATCATCATATTGATAGAAGAACAGGGAGTGGAAATCCCATATTATACTTGCCATCAAGGGATACTGAAGTTCAAGGGGAGACTGGTTCTATCCAAAACTTCTACATTGATTCCTACCATTATGCACACCTATCATGACTCGGTGTTTGGAGGACATTCAGGGTTCCTTAAAACATATAAAAGAATGGCTGGTGAATTGTATTAG

Coding sequence (CDS)

ATGATGACCCTCCCAGTACTGGCAATGCCCGACTTCAACTTGCCATTTGAGATCGAATCCGATGCATCAGGTTTTGGAGTAGGGGCAGTGTTGGTTCAGGCCAAGAGACCGATTGCCTACTTCAGCAAAGTCTTAAGTATGCGGGATCGAGCAAGACCAGTGTATGAACCAGAACTAATAGCAGTGGTGTGGGCTGTCCAACAATGGCGACCATATTTGTTGGGGAGAAAGTTCACAGTAAAGACGGACCAGAGATCACTTAAGTTTCTATTAGAACAAAGAGTAATACAACCGCAATACCAGCAATGGATCGCTAAGTTACTCGGCTATTCGTTTGAAGTACTATACAAGCCCGAATTGGAGAATAAAGCCGTCGATGCCCTGTCCAGAATGGGACCAACGTCACACTTGAACCAATTAACAGCCCCAGCCTTGTTGGATGTGGAAGTAATTCAAGAAGAAGTCAGAAAGGATCCAGCCCTACGAGAGATCATCATATTGATAGAAGAACAGGGAGTGGAAATCCCATATTATACTTGCCATCAAGGGATACTGAAGTTCAAGGGGAGACTGGTTCTATCCAAAACTTCTACATTGATTCCTACCATTATGCACACCTATCATGACTCGGTGTTTGGAGGACATTCAGGGTTCCTTAAAACATATAAAAGAATGGCTGGTGAATTGTATTAG

Protein sequence

MMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQAKRPIAYFSKVLSMRDRARPVYEPELIAVVWAVQQWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPELENKAVDALSRMGPTSHLNQLTAPALLDVEVIQEEVRKDPALREIIILIEEQGVEIPYYTCHQGILKFKGRLVLSKTSTLIPTIMHTYHDSVFGGHSGFLKTYKRMAGELY

Homology

[Close]

BLAST of Cmc05g0133911 vs. NCBI nr
Match: KAA0051400.1 (putative retroelement pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 452.2 bits (1162), Expect = 2.7e-123
Identity = 226/230 (98.26%), Postives = 228/230 (99.13%), Query Frame = 0


Query: 1   MMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQAKRPIAYFSKVLSMRDRARPVYEPELI 60
           MMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQAKRPIAYFSKVLSMRDRARPVYEPELI
Sbjct: 85  MMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQAKRPIAYFSKVLSMRDRARPVYEPELI 144

Query: 61  AVVWAVQQWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPEL 120
           AVVWAVQ+WRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKP +
Sbjct: 145 AVVWAVQRWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPGM 204

Query: 121 ENKAVDALSRMGPTSHLNQLTAPALLDVEVIQEEVRKDPALREIIILIEEQGVEIPYYTC 180
           ENKAVDALSRMGPTSHLNQLTAPALLDVEVIQEEVRKDPALREIIILIEEQGVEIPYYTC
Sbjct: 205 ENKAVDALSRMGPTSHLNQLTAPALLDVEVIQEEVRKDPALREIIILIEEQGVEIPYYTC 264

Query: 181 HQGILKFKGRLVLSKTSTLIPTIMHTYHDSVFGGHSGFLKTYKRMAGELY 231
           HQGILKFK RLVLSKTSTLIPTIMHTYHDSVFGGHSGFLKTYKRMAGELY
Sbjct: 265 HQGILKFKERLVLSKTSTLIPTIMHTYHDSVFGGHSGFLKTYKRMAGELY 314

[Close]

BLAST of Cmc05g0133911 vs. NCBI nr
Match: KAA0041253.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 439.9 bits (1130), Expect = 1.4e-119
Identity = 217/230 (94.35%), Postives = 226/230 (98.26%), Query Frame = 0


Query: 1   MMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQAKRPIAYFSKVLSMRDRARPVYEPELI 60
           MMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQAKRP+AYFSKVLSMRDRARPVYE ELI
Sbjct: 356 MMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQAKRPVAYFSKVLSMRDRARPVYERELI 415

Query: 61  AVVWAVQQWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPEL 120
           AVVWAVQ+WRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKP L
Sbjct: 416 AVVWAVQRWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPGL 475

Query: 121 ENKAVDALSRMGPTSHLNQLTAPALLDVEVIQEEVRKDPALREIIILIEEQGVEIPYYTC 180
           ENKA DALSR+GPT+HLNQLTAPALLDVEVIQ+EVRKDPALREII +IEEQG+EIP+YTC
Sbjct: 476 ENKAADALSRIGPTAHLNQLTAPALLDVEVIQKEVRKDPALREIISMIEEQGIEIPHYTC 535

Query: 181 HQGILKFKGRLVLSKTSTLIPTIMHTYHDSVFGGHSGFLKTYKRMAGELY 231
           HQGILKFKGRLVLSKTSTLIPTIMHTYHDSVFGGHSGFL+TYKRMAGELY
Sbjct: 536 HQGILKFKGRLVLSKTSTLIPTIMHTYHDSVFGGHSGFLRTYKRMAGELY 585

[Close]

BLAST of Cmc05g0133911 vs. NCBI nr
Match: TYK16053.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 439.9 bits (1130), Expect = 1.4e-119
Identity = 217/230 (94.35%), Postives = 226/230 (98.26%), Query Frame = 0


Query: 1   MMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQAKRPIAYFSKVLSMRDRARPVYEPELI 60
           MMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQAKRP+AYFSKVLSMRDRARPVYE ELI
Sbjct: 356 MMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQAKRPVAYFSKVLSMRDRARPVYERELI 415

Query: 61  AVVWAVQQWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPEL 120
           AVVWAVQ+WRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKP L
Sbjct: 416 AVVWAVQRWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPGL 475

Query: 121 ENKAVDALSRMGPTSHLNQLTAPALLDVEVIQEEVRKDPALREIIILIEEQGVEIPYYTC 180
           ENKA DALSR+GPT+HLNQLTAPALLDVEVIQ+EVRKDPALREII +IEEQG+EIP+YTC
Sbjct: 476 ENKAADALSRIGPTAHLNQLTAPALLDVEVIQKEVRKDPALREIISMIEEQGIEIPHYTC 535

Query: 181 HQGILKFKGRLVLSKTSTLIPTIMHTYHDSVFGGHSGFLKTYKRMAGELY 231
           HQGILKFKGRLVLSKTSTLIPTIMHTYHDSVFGGHSGFL+TYKRMAGELY
Sbjct: 536 HQGILKFKGRLVLSKTSTLIPTIMHTYHDSVFGGHSGFLRTYKRMAGELY 585

[Close]

BLAST of Cmc05g0133911 vs. NCBI nr
Match: KAA0063300.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 436.4 bits (1121), Expect = 1.5e-118
Identity = 217/230 (94.35%), Postives = 223/230 (96.96%), Query Frame = 0


Query: 1   MMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQAKRPIAYFSKVLSMRDRARPVYEPELI 60
           MMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQAKRP+AYFSKVLSMRDRARPVYE ELI
Sbjct: 764 MMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQAKRPVAYFSKVLSMRDRARPVYERELI 823

Query: 61  AVVWAVQQWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPEL 120
           AVVWAVQ+WRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKP L
Sbjct: 824 AVVWAVQRWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPGL 883

Query: 121 ENKAVDALSRMGPTSHLNQLTAPALLDVEVIQEEVRKDPALREIIILIEEQGVEIPYYTC 180
           ENKA DALSR+GPT+HLNQLTAPALLDVEVIQ EVRKDPALREII LIEEQG+EIP YTC
Sbjct: 884 ENKAADALSRIGPTAHLNQLTAPALLDVEVIQREVRKDPALREIISLIEEQGIEIPRYTC 943

Query: 181 HQGILKFKGRLVLSKTSTLIPTIMHTYHDSVFGGHSGFLKTYKRMAGELY 231
           HQGILKFKGRLVLSKTS LIPTIMHTYHDSVFGGHSGFL+TYKRMAGELY
Sbjct: 944 HQGILKFKGRLVLSKTSILIPTIMHTYHDSVFGGHSGFLRTYKRMAGELY 993

[Close]

BLAST of Cmc05g0133911 vs. NCBI nr
Match: KAA0061635.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 433.0 bits (1112), Expect = 1.7e-117
Identity = 214/230 (93.04%), Postives = 224/230 (97.39%), Query Frame = 0


Query: 1    MMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQAKRPIAYFSKVLSMRDRARPVYEPELI 60
            MMTLPVLAMPDFNLPFE ESDASGFGVGAVLVQAKRP+AYFSKVLSMRDRARPVYE ELI
Sbjct: 902  MMTLPVLAMPDFNLPFENESDASGFGVGAVLVQAKRPVAYFSKVLSMRDRARPVYERELI 961

Query: 61   AVVWAVQQWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPEL 120
            AVVWAVQ+WRPYLL RKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKP L
Sbjct: 962  AVVWAVQRWRPYLLRRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPGL 1021

Query: 121  ENKAVDALSRMGPTSHLNQLTAPALLDVEVIQEEVRKDPALREIIILIEEQGVEIPYYTC 180
            ENKA DALSR+GPT+HLNQLTAPALLDVEVIQ+EVRKDPALREII +IEEQG+EIP+YTC
Sbjct: 1022 ENKAADALSRIGPTAHLNQLTAPALLDVEVIQKEVRKDPALREIISMIEEQGMEIPHYTC 1081

Query: 181  HQGILKFKGRLVLSKTSTLIPTIMHTYHDSVFGGHSGFLKTYKRMAGELY 231
            HQGILKFKGRL+LSKTSTLIPTIMHTYHDSVFGGHSGFL+TYKRMAGELY
Sbjct: 1082 HQGILKFKGRLILSKTSTLIPTIMHTYHDSVFGGHSGFLRTYKRMAGELY 1131

[Close]

BLAST of Cmc05g0133911 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.4e-18
Identity = 47/127 (37.01%), Postives = 75/127 (59.06%), Query Frame = 0


Query: 5   PVLAMPDFNLPFEIESDASGFGVGAVLVQAKRPIAYFSKVLSMRDRARPVYEPELIAVVW 64
           P+L +PDF   F + +DAS   +GAVL Q   PI++ S+ L+  +      E EL+A+VW
Sbjct: 497 PILQLPDFEKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVW 556

Query: 65  AVQQWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPELENKA 124
           A + +R YLLGR+F + +D + L++L   +    + ++W  +L  Y F++ Y    EN  
Sbjct: 557 ATKTFRHYLLGRQFLIASDHQPLRWLHNLKEPGAKLERWRVRLSEYQFKIDYIKGKENSV 616

Query: 125 VDALSRM 132
            DALSR+
Sbjct: 617 ADALSRI 623

[Close]

BLAST of Cmc05g0133911 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.4e-18
Identity = 54/141 (38.30%), Postives = 79/141 (56.03%), Query Frame = 0


Query: 6   VLAMPDFNLPFEIESDASGFGVGAVLVQ----AKRPIAYFSKVLSMRDRARPVYEPELIA 65
           +LA P F  PF + +DAS + +GAVL Q      RPIAY S+ L+  +      E E++A
Sbjct: 425 ILAFPCFTKPFHLTTDASNWAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLA 484

Query: 66  VVWAVQQWRPYLLGR-KFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPEL 125
           ++W++   R YL G     V TD + L F L  R    + ++W A++  Y+ E++YKP  
Sbjct: 485 IIWSLDNLRAYLYGAGTIKVYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGK 544

Query: 126 ENKAVDALSRMGPTSHLNQLT 142
            N   DALSR+ P   LNQL+
Sbjct: 545 SNVVADALSRIPP--QLNQLS 563

[Close]

BLAST of Cmc05g0133911 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 4.1e-18
Identity = 47/127 (37.01%), Postives = 72/127 (56.69%), Query Frame = 0


Query: 5   PVLAMPDFNLPFEIESDASGFGVGAVLVQAKRPIAYFSKVLSMRDRARPVYEPELIAVVW 64
           P+L +PDF   F + +DAS   +GAVL Q   P++Y S+ L+  +      E EL+A+VW
Sbjct: 498 PILKVPDFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVW 557

Query: 65  AVQQWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPELENKA 124
           A + +R YLLGR F + +D + L +L   +    +  +W  KL  + F++ Y    EN  
Sbjct: 558 ATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTRWRVKLSEFDFDIKYIKGKENCV 617

Query: 125 VDALSRM 132
            DALSR+
Sbjct: 618 ADALSRI 624

[Close]

BLAST of Cmc05g0133911 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 7.8e-17
Identity = 53/151 (35.10%), Postives = 81/151 (53.64%), Query Frame = 0


Query: 6   VLAMPDFNLPFEIESDASGFGVGAVLVQAKRPIAYFSKVLSMRDRARPVYEPELIAVVWA 65
           +L  PDF  PF++ +DAS  G+GAVL Q  RPI   S+ L   ++     E EL+A+VWA
Sbjct: 485 ILKYPDFKKPFDLTTDASASGIGAVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWA 544

Query: 66  VQQWRPYLLG-RKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPELENKA 125
           + + + +L G R+  + TD + L F +  R    + ++W + +  ++ +V YKP  EN  
Sbjct: 545 LGKLQNFLYGSREINIFTDHQPLTFAVADRNTNAKIKRWKSYIDQHNAKVFYKPGKENFV 604

Query: 126 VDALSRMGPTSHLNQLTAPALLDVEVIQEEV 156
            DALSR     +LN L      D   I  E+
Sbjct: 605 ADALSR----QNLNALQNEPQSDAATIHSEL 631

[Close]

BLAST of Cmc05g0133911 vs. ExPASy Swiss-Prot
Match: P10394 (Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.0e-13
Identity = 48/130 (36.92%), Postives = 69/130 (53.08%), Query Frame = 0


Query: 6   VLAMPDFNLPFEIESDASGFGVGAVLVQ----AKRPIAYFSKVLSMRDRARPVYEPELIA 65
           +L  PDF+  F I +DAS    GAVL Q     + P+AY S+  +  +  +   E EL A
Sbjct: 606 LLQYPDFSKEFCITTDASKQACGAVLTQNHNGHQLPVAYASRAFTKGESNKSTTEQELAA 665

Query: 66  VVWAVQQWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPELE 125
           + WA+  +RPY+ G+ FTVKTD R L +L        +  +   +L  Y+F V Y    +
Sbjct: 666 IHWAIIHFRPYIYGKHFTVKTDHRPLTYLFSMVNPSSKLTRIRLELEEYNFTVEYLKGKD 725

Query: 126 NKAVDALSRM 132
           N   DALSR+
Sbjct: 726 NHVADALSRI 735

[Close]

BLAST of Cmc05g0133911 vs. ExPASy TrEMBL
Match: A0A5A7U8A5 (Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001420 PE=4 SV=1)

HSP 1 Score: 452.2 bits (1162), Expect = 1.3e-123
Identity = 226/230 (98.26%), Postives = 228/230 (99.13%), Query Frame = 0


Query: 1   MMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQAKRPIAYFSKVLSMRDRARPVYEPELI 60
           MMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQAKRPIAYFSKVLSMRDRARPVYEPELI
Sbjct: 85  MMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQAKRPIAYFSKVLSMRDRARPVYEPELI 144

Query: 61  AVVWAVQQWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPEL 120
           AVVWAVQ+WRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKP +
Sbjct: 145 AVVWAVQRWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPGM 204

Query: 121 ENKAVDALSRMGPTSHLNQLTAPALLDVEVIQEEVRKDPALREIIILIEEQGVEIPYYTC 180
           ENKAVDALSRMGPTSHLNQLTAPALLDVEVIQEEVRKDPALREIIILIEEQGVEIPYYTC
Sbjct: 205 ENKAVDALSRMGPTSHLNQLTAPALLDVEVIQEEVRKDPALREIIILIEEQGVEIPYYTC 264

Query: 181 HQGILKFKGRLVLSKTSTLIPTIMHTYHDSVFGGHSGFLKTYKRMAGELY 231
           HQGILKFK RLVLSKTSTLIPTIMHTYHDSVFGGHSGFLKTYKRMAGELY
Sbjct: 265 HQGILKFKERLVLSKTSTLIPTIMHTYHDSVFGGHSGFLKTYKRMAGELY 314

[Close]

BLAST of Cmc05g0133911 vs. ExPASy TrEMBL
Match: A0A5A7TDM4 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold128G002330 PE=4 SV=1)

HSP 1 Score: 439.9 bits (1130), Expect = 6.6e-120
Identity = 217/230 (94.35%), Postives = 226/230 (98.26%), Query Frame = 0


Query: 1   MMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQAKRPIAYFSKVLSMRDRARPVYEPELI 60
           MMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQAKRP+AYFSKVLSMRDRARPVYE ELI
Sbjct: 356 MMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQAKRPVAYFSKVLSMRDRARPVYERELI 415

Query: 61  AVVWAVQQWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPEL 120
           AVVWAVQ+WRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKP L
Sbjct: 416 AVVWAVQRWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPGL 475

Query: 121 ENKAVDALSRMGPTSHLNQLTAPALLDVEVIQEEVRKDPALREIIILIEEQGVEIPYYTC 180
           ENKA DALSR+GPT+HLNQLTAPALLDVEVIQ+EVRKDPALREII +IEEQG+EIP+YTC
Sbjct: 476 ENKAADALSRIGPTAHLNQLTAPALLDVEVIQKEVRKDPALREIISMIEEQGIEIPHYTC 535

Query: 181 HQGILKFKGRLVLSKTSTLIPTIMHTYHDSVFGGHSGFLKTYKRMAGELY 231
           HQGILKFKGRLVLSKTSTLIPTIMHTYHDSVFGGHSGFL+TYKRMAGELY
Sbjct: 536 HQGILKFKGRLVLSKTSTLIPTIMHTYHDSVFGGHSGFLRTYKRMAGELY 585

[Close]

BLAST of Cmc05g0133911 vs. ExPASy TrEMBL
Match: A0A5D3CW07 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold32G00650 PE=4 SV=1)

HSP 1 Score: 439.9 bits (1130), Expect = 6.6e-120
Identity = 217/230 (94.35%), Postives = 226/230 (98.26%), Query Frame = 0


Query: 1   MMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQAKRPIAYFSKVLSMRDRARPVYEPELI 60
           MMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQAKRP+AYFSKVLSMRDRARPVYE ELI
Sbjct: 356 MMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQAKRPVAYFSKVLSMRDRARPVYERELI 415

Query: 61  AVVWAVQQWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPEL 120
           AVVWAVQ+WRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKP L
Sbjct: 416 AVVWAVQRWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPGL 475

Query: 121 ENKAVDALSRMGPTSHLNQLTAPALLDVEVIQEEVRKDPALREIIILIEEQGVEIPYYTC 180
           ENKA DALSR+GPT+HLNQLTAPALLDVEVIQ+EVRKDPALREII +IEEQG+EIP+YTC
Sbjct: 476 ENKAADALSRIGPTAHLNQLTAPALLDVEVIQKEVRKDPALREIISMIEEQGIEIPHYTC 535

Query: 181 HQGILKFKGRLVLSKTSTLIPTIMHTYHDSVFGGHSGFLKTYKRMAGELY 231
           HQGILKFKGRLVLSKTSTLIPTIMHTYHDSVFGGHSGFL+TYKRMAGELY
Sbjct: 536 HQGILKFKGRLVLSKTSTLIPTIMHTYHDSVFGGHSGFLRTYKRMAGELY 585

[Close]

BLAST of Cmc05g0133911 vs. ExPASy TrEMBL
Match: A0A5A7V7S9 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold205G001230 PE=4 SV=1)

HSP 1 Score: 436.4 bits (1121), Expect = 7.3e-119
Identity = 217/230 (94.35%), Postives = 223/230 (96.96%), Query Frame = 0


Query: 1   MMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQAKRPIAYFSKVLSMRDRARPVYEPELI 60
           MMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQAKRP+AYFSKVLSMRDRARPVYE ELI
Sbjct: 764 MMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQAKRPVAYFSKVLSMRDRARPVYERELI 823

Query: 61  AVVWAVQQWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPEL 120
           AVVWAVQ+WRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKP L
Sbjct: 824 AVVWAVQRWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPGL 883

Query: 121 ENKAVDALSRMGPTSHLNQLTAPALLDVEVIQEEVRKDPALREIIILIEEQGVEIPYYTC 180
           ENKA DALSR+GPT+HLNQLTAPALLDVEVIQ EVRKDPALREII LIEEQG+EIP YTC
Sbjct: 884 ENKAADALSRIGPTAHLNQLTAPALLDVEVIQREVRKDPALREIISLIEEQGIEIPRYTC 943

Query: 181 HQGILKFKGRLVLSKTSTLIPTIMHTYHDSVFGGHSGFLKTYKRMAGELY 231
           HQGILKFKGRLVLSKTS LIPTIMHTYHDSVFGGHSGFL+TYKRMAGELY
Sbjct: 944 HQGILKFKGRLVLSKTSILIPTIMHTYHDSVFGGHSGFLRTYKRMAGELY 993

[Close]

BLAST of Cmc05g0133911 vs. ExPASy TrEMBL
Match: A0A5A7V707 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold212G00030 PE=4 SV=1)

HSP 1 Score: 433.0 bits (1112), Expect = 8.1e-118
Identity = 214/230 (93.04%), Postives = 224/230 (97.39%), Query Frame = 0


Query: 1    MMTLPVLAMPDFNLPFEIESDASGFGVGAVLVQAKRPIAYFSKVLSMRDRARPVYEPELI 60
            MMTLPVLAMPDFNLPFE ESDASGFGVGAVLVQAKRP+AYFSKVLSMRDRARPVYE ELI
Sbjct: 902  MMTLPVLAMPDFNLPFENESDASGFGVGAVLVQAKRPVAYFSKVLSMRDRARPVYERELI 961

Query: 61   AVVWAVQQWRPYLLGRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPEL 120
            AVVWAVQ+WRPYLL RKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKP L
Sbjct: 962  AVVWAVQRWRPYLLRRKFTVKTDQRSLKFLLEQRVIQPQYQQWIAKLLGYSFEVLYKPGL 1021

Query: 121  ENKAVDALSRMGPTSHLNQLTAPALLDVEVIQEEVRKDPALREIIILIEEQGVEIPYYTC 180
            ENKA DALSR+GPT+HLNQLTAPALLDVEVIQ+EVRKDPALREII +IEEQG+EIP+YTC
Sbjct: 1022 ENKAADALSRIGPTAHLNQLTAPALLDVEVIQKEVRKDPALREIISMIEEQGMEIPHYTC 1081

Query: 181  HQGILKFKGRLVLSKTSTLIPTIMHTYHDSVFGGHSGFLKTYKRMAGELY 231
            HQGILKFKGRL+LSKTSTLIPTIMHTYHDSVFGGHSGFL+TYKRMAGELY
Sbjct: 1082 HQGILKFKGRLILSKTSTLIPTIMHTYHDSVFGGHSGFLRTYKRMAGELY 1131

The following BLAST results are available for this feature:

BLAST of Cmc05g0133911 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051400.1	2.7e-123	98.26	putative retroelement pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0041253.1	1.4e-119	94.35	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK16053.1	1.4e-119	94.35	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0063300.1	1.5e-118	94.35	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0061635.1	1.7e-117	93.04	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc05g0133911 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	2.4e-18	37.01	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q8I7P9	2.4e-18	38.30	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P04323	4.1e-18	37.01	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P10401	7.8e-17	35.10	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]
P10394	1.0e-13	36.92	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaste...	[more]

BLAST of Cmc05g0133911 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U8A5	1.3e-123	98.26	Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5A7TDM4	6.6e-120	94.35	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3CW07	6.6e-120	94.35	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7V7S9	7.3e-119	94.35	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7V707	8.1e-118	93.04	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]

BLAST of Cmc05g0133911 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR041373	Reverse transcriptase, RNase H-like domain	PFAM	PF17917	RT_RNaseH	coord: 11..110 e-value: 6.0E-28 score: 97.2
None	No IPR available	GENE3D	3.10.20.370		coord: 11..82 e-value: 9.8E-11 score: 43.5
None	No IPR available	PANTHER	PTHR24559:SF384	SUBFAMILY NOT NAMED	coord: 9..132
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 9..132
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 17..131 e-value: 1.11815E-45 score: 146.484
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..117

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc05g0133911.1	Cmc05g0133911.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0007034	vacuolar transport
cellular_component	GO:0005768	endosome
molecular_function	GO:0003676	nucleic acid binding