Cmc05g0133661 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc05g0133661
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr05: 14490433 .. 14491017 (+)
RNA-Seq Expression	Cmc05g0133661
Synteny	Cmc05g0133661

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGAAGTTGATTAGAACACTCTTATCCATTGTCACTTTTTATGATTATGAAATTTGGCAAATGGATGTCAAGACAACCTTTTTAAATGGAAATCTTGAGGAGAGTATCTATATAGCTCAACCAGAGGGGTTTATAGAAAATGGTCAAAAACAAAAGGTTTGTAAGCTTCAGAAATCCATTTATGGTTTGAAGCAAGCATCTAGACCCTGGAATATAAGATTTGATACTGTGATTAAGTCTTATGGCTTTGAACAAAATTTTGACGAACCTCGTGTTTACAAAAAGGTCGTCAATTCTATTGTAGCATTCTTAGTTTTATATGTAGATGATACTCTACTTATTAGGAATGACGTAGGTTATCTTACTGAAATCAAGAAATGGCTAGCTAGGCAATTTCAAATGAAAGATTTGGAAGATGCACAATTCGTTCTTGGAATCCAAATTGTTTGGAACCGTAAAAATAGAACACTAGCCATGTCTCAAGCATCTTATATTGACAAAATGTTATCTATATATAAAATGCAGAATTCCAAAAAGGGTCTGCTGCTGTATAGATATGGAATTCATTTGTCAAAGGAATAA

mRNA sequence

ATGCTGAAGTTGATTAGAACACTCTTATCCATTGTCACTTTTTATGATTATGAAATTTGGCAAATGGATGTCAAGACAACCTTTTTAAATGGAAATCTTGAGGAGAGTATCTATATAGCTCAACCAGAGGGGTTTATAGAAAATGGTCAAAAACAAAAGGTTTGTAAGCTTCAGAAATCCATTTATGGTTTGAAGCAAGCATCTAGACCCTGGAATATAAGATTTGATACTGTGATTAAGTCTTATGGCTTTGAACAAAATTTTGACGAACCTCGTGTTTACAAAAAGGTCGTCAATTCTATTGTAGCATTCTTAGTTTTATATGTAGATGATACTCTACTTATTAGGAATGACGTAGGTTATCTTACTGAAATCAAGAAATGGCTAGCTAGGCAATTTCAAATGAAAGATTTGGAAGATGCACAATTCGTTCTTGGAATCCAAATTGTTTGGAACCGTAAAAATAGAACACTAGCCATGTCTCAAGCATCTTATATTGACAAAATGTTATCTATATATAAAATGCAGAATTCCAAAAAGGGTCTGCTGCTGTATAGATATGGAATTCATTTGTCAAAGGAATAA

Coding sequence (CDS)

ATGCTGAAGTTGATTAGAACACTCTTATCCATTGTCACTTTTTATGATTATGAAATTTGGCAAATGGATGTCAAGACAACCTTTTTAAATGGAAATCTTGAGGAGAGTATCTATATAGCTCAACCAGAGGGGTTTATAGAAAATGGTCAAAAACAAAAGGTTTGTAAGCTTCAGAAATCCATTTATGGTTTGAAGCAAGCATCTAGACCCTGGAATATAAGATTTGATACTGTGATTAAGTCTTATGGCTTTGAACAAAATTTTGACGAACCTCGTGTTTACAAAAAGGTCGTCAATTCTATTGTAGCATTCTTAGTTTTATATGTAGATGATACTCTACTTATTAGGAATGACGTAGGTTATCTTACTGAAATCAAGAAATGGCTAGCTAGGCAATTTCAAATGAAAGATTTGGAAGATGCACAATTCGTTCTTGGAATCCAAATTGTTTGGAACCGTAAAAATAGAACACTAGCCATGTCTCAAGCATCTTATATTGACAAAATGTTATCTATATATAAAATGCAGAATTCCAAAAAGGGTCTGCTGCTGTATAGATATGGAATTCATTTGTCAAAGGAATAA

Protein sequence

MLKLIRTLLSIVTFYDYEIWQMDVKTTFLNGNLEESIYIAQPEGFIENGQKQKVCKLQKSIYGLKQASRPWNIRFDTVIKSYGFEQNFDEPRVYKKVVNSIVAFLVLYVDDTLLIRNDVGYLTEIKKWLARQFQMKDLEDAQFVLGIQIVWNRKNRTLAMSQASYIDKMLSIYKMQNSKKGLLLYRYGIHLSKE

Homology

[Close]

BLAST of Cmc05g0133661 vs. NCBI nr
Match: TYK09500.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 331.3 bits (848), Expect = 5.8e-87
Identity = 166/194 (85.57%), Postives = 176/194 (90.72%), Query Frame = 0


Query: 1   MLKLIRTLLSIVTFYDYEIWQMDVKTTFLNGNLEESIYIAQPEGFIENGQKQKVCKLQKS 60
           MLK IR LLSI TFYDYEIWQ+DVKT FLNGNLEESIY+AQPEGFI+ GQ+QK+CK QKS
Sbjct: 1   MLKSIRILLSIATFYDYEIWQIDVKTAFLNGNLEESIYMAQPEGFIKKGQEQKICKFQKS 60

Query: 61  IYGLKQASRPWNIRFDTVIKSYGFEQNFDEPRVYKKVVNSIVAFLVLYVDDTLLIRNDVG 120
           IYGLKQASR WNIRFDT IKSYGFEQN D+P VYKKVVNSIVAFLVLYVDD LL+ NDVG
Sbjct: 61  IYGLKQASRSWNIRFDTAIKSYGFEQNVDKPCVYKKVVNSIVAFLVLYVDDILLVGNDVG 120

Query: 121 YLTEIKKWLARQFQMKDLEDAQFVLGIQIVWNRKNRTLAMSQASYIDKMLSIYKMQNSKK 180
           YLT+IKKWLA QFQMKD  DAQ+VLGIQIV NRKNRTLAMS+ASYIDKMLS YKMQNSKK
Sbjct: 121 YLTDIKKWLATQFQMKDFGDAQYVLGIQIVRNRKNRTLAMSRASYIDKMLSRYKMQNSKK 180

Query: 181 GLLLYRYGIHLSKE 195
           GLL YRYGIHLSKE
Sbjct: 181 GLLPYRYGIHLSKE 194

[Close]

BLAST of Cmc05g0133661 vs. NCBI nr
Match: TYK24002.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 322.0 bits (824), Expect = 3.5e-84
Identity = 162/194 (83.51%), Postives = 175/194 (90.21%), Query Frame = 0


Query: 1   MLKLIRTLLSIVTFYDYEIWQMDVKTTFLNGNLEESIYIAQPEGFIENGQKQKVCKLQKS 60
           MLK IR LLSI TFYDYEIWQMDVKT FLNGNLE S+Y+AQP+GFI+NGQ+QKVCKLQKS
Sbjct: 1   MLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEGSVYMAQPKGFIKNGQEQKVCKLQKS 60

Query: 61  IYGLKQASRPWNIRFDTVIKSYGFEQNFDEPRVYKKVVNSIVAFLVLYVDDTLLIRNDVG 120
           IY LKQASR WNI+FDTVIK+YGFEQN +EPRVYKKVVNSIVAFLVLYVDD LLI NDVG
Sbjct: 61  IYDLKQASRSWNIKFDTVIKTYGFEQNVEEPRVYKKVVNSIVAFLVLYVDDILLIGNDVG 120

Query: 121 YLTEIKKWLARQFQMKDLEDAQFVLGIQIVWNRKNRTLAMSQASYIDKMLSIYKMQNSKK 180
           YLT+I+KWLA QFQMK L DAQ+VLGIQIV NRKNRTL MSQASYIDKMLS YK+Q S K
Sbjct: 121 YLTDIEKWLATQFQMKYLGDAQYVLGIQIVRNRKNRTLVMSQASYIDKMLSRYKIQKSNK 180

Query: 181 GLLLYRYGIHLSKE 195
           GLL YRYGIHLSK+
Sbjct: 181 GLLSYRYGIHLSKK 194

[Close]

BLAST of Cmc05g0133661 vs. NCBI nr
Match: KAA0061927.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 318.9 bits (816), Expect = 3.0e-83
Identity = 161/194 (82.99%), Postives = 174/194 (89.69%), Query Frame = 0


Query: 1   MLKLIRTLLSIVTFYDYEIWQMDVKTTFLNGNLEESIYIAQPEGFIENGQKQKVCKLQKS 60
           MLK IR LLSI TFYDYEIWQMDVKT FLNGNLE S+Y+AQP+GFI+NGQ+QKVCKLQKS
Sbjct: 1   MLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEGSVYMAQPKGFIKNGQEQKVCKLQKS 60

Query: 61  IYGLKQASRPWNIRFDTVIKSYGFEQNFDEPRVYKKVVNSIVAFLVLYVDDTLLIRNDVG 120
           IY LKQASR WNI+FDTVIK+YGFEQN +EP VYKKVVNSIVAFLVLYVDD LLI NDVG
Sbjct: 61  IYDLKQASRSWNIKFDTVIKTYGFEQNVEEPCVYKKVVNSIVAFLVLYVDDILLIGNDVG 120

Query: 121 YLTEIKKWLARQFQMKDLEDAQFVLGIQIVWNRKNRTLAMSQASYIDKMLSIYKMQNSKK 180
           YLT+I+KWLA QFQMK L DAQ+VLGIQIV NRKNRTL MSQASYIDKMLS YK+Q S K
Sbjct: 121 YLTDIEKWLATQFQMKYLGDAQYVLGIQIVRNRKNRTLVMSQASYIDKMLSRYKIQKSNK 180

Query: 181 GLLLYRYGIHLSKE 195
           GLL YRYGIHLSK+
Sbjct: 181 GLLSYRYGIHLSKK 194

[Close]

BLAST of Cmc05g0133661 vs. NCBI nr
Match: KAA0045356.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 318.2 bits (814), Expect = 5.1e-83
Identity = 159/194 (81.96%), Postives = 172/194 (88.66%), Query Frame = 0


Query: 1   MLKLIRTLLSIVTFYDYEIWQMDVKTTFLNGNLEESIYIAQPEGFIENGQKQKVCKLQKS 60
           M+K IR LLSI TFYDYEIWQMDVKT FLNGNLEESIY+ QPEGFI+ GQ+QKVCKLQKS
Sbjct: 224 MIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQPEGFIQKGQEQKVCKLQKS 283

Query: 61  IYGLKQASRPWNIRFDTVIKSYGFEQNFDEPRVYKKVVNSIVAFLVLYVDDTLLIRNDVG 120
           IYGLKQASR WNIRFDT IKSYGFEQN DEP VYK+++NS VAFLVLYVDD LLI N+V 
Sbjct: 284 IYGLKQASRSWNIRFDTGIKSYGFEQNVDEPCVYKRIINSTVAFLVLYVDDILLIGNEVD 343

Query: 121 YLTEIKKWLARQFQMKDLEDAQFVLGIQIVWNRKNRTLAMSQASYIDKMLSIYKMQNSKK 180
           +LT+IK+WL  QFQMKDL  AQ+VLGIQIV NRKN+TLAMSQ SYIDKMLS YKMQNSKK
Sbjct: 344 HLTDIKEWLDTQFQMKDLGSAQYVLGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSKK 403

Query: 181 GLLLYRYGIHLSKE 195
           GLL YRYGIHLSKE
Sbjct: 404 GLLPYRYGIHLSKE 417

[Close]

BLAST of Cmc05g0133661 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 315.5 bits (807), Expect = 3.3e-82
Identity = 157/194 (80.93%), Postives = 172/194 (88.66%), Query Frame = 0


Query: 1    MLKLIRTLLSIVTFYDYEIWQMDVKTTFLNGNLEESIYIAQPEGFIENGQKQKVCKLQKS 60
            MLK IR LLSI TFY+YEIWQMDVKT FLNGNLEESIY+ QPEGFI   Q+QKVCKLQKS
Sbjct: 894  MLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIYMVQPEGFIAQDQEQKVCKLQKS 953

Query: 61   IYGLKQASRPWNIRFDTVIKSYGFEQNFDEPRVYKKVVNSIVAFLVLYVDDTLLIRNDVG 120
            IYGLKQASR WNIRFDT IKSYGFEQN DEP VYKK+VNS+VAFL+LYVDD LLI NDV 
Sbjct: 954  IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIVNSVVAFLILYVDDILLIGNDVE 1013

Query: 121  YLTEIKKWLARQFQMKDLEDAQFVLGIQIVWNRKNRTLAMSQASYIDKMLSIYKMQNSKK 180
            YLT++KKWL  QFQMKDL +AQ++LGIQIV NRKN+TLAMSQASYIDK+LS YKMQNSKK
Sbjct: 1014 YLTDVKKWLNTQFQMKDLGEAQYILGIQIVRNRKNKTLAMSQASYIDKVLSRYKMQNSKK 1073

Query: 181  GLLLYRYGIHLSKE 195
            G L +R+GIHLSKE
Sbjct: 1074 GQLPFRHGIHLSKE 1087

[Close]

BLAST of Cmc05g0133661 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.0e-38
Identity = 82/176 (46.59%), Postives = 120/176 (68.18%), Query Frame = 0


Query: 5    IRTLLSIVTFYDYEIWQMDVKTTFLNGNLEESIYIAQPEGFIENGQKQKVCKLQKSIYGL 64
            IRT+LS+    D E+ Q+DVKT FL+G+LEE IY+ QPEGF   G+K  VCKL KS+YGL
Sbjct: 904  IRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGL 963

Query: 65   KQASRPWNIRFDTVIKSYGFEQNFDEPRVY-KKVVNSIVAFLVLYVDDTLLIRNDVGYLT 124
            KQA R W ++FD+ +KS  + + + +P VY K+   +    L+LYVDD L++  D G + 
Sbjct: 964  KQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIA 1023

Query: 125  EIKKWLARQFQMKDLEDAQFVLGIQIVWNRKNRTLAMSQASYIDKMLSIYKMQNSK 180
            ++K  L++ F MKDL  AQ +LG++IV  R +R L +SQ  YI+++L  + M+N+K
Sbjct: 1024 KLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAK 1079

[Close]

BLAST of Cmc05g0133661 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 115.2 bits (287), Expect = 8.5e-25
Identity = 65/175 (37.14%), Postives = 106/175 (60.57%), Query Frame = 0


Query: 6    RTLLSIVTFYDYEIWQMDVKTTFLNGNLEESIYIAQPEGFIENGQKQKVCKLQKSIYGLK 65
            R +LS+V  Y+ ++ QMDVKT FLNG L+E IY+  P+G   N     VCKL K+IYGLK
Sbjct: 985  RFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGISCN--SDNVCKLNKAIYGLK 1044

Query: 66   QASRPWNIRFDTVIKSYGFEQNFDEPRVY---KKVVNSIVAFLVLYVDDTLLIRNDVGYL 125
            QA+R W   F+  +K   F  +  +  +Y   K  +N  + +++LYVDD ++   D+  +
Sbjct: 1045 QAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENI-YVLLYVDDVVIATGDMTRM 1104

Query: 126  TEIKKWLARQFQMKDLEDAQFVLGIQIVWNRKNRTLAMSQASYIDKMLSIYKMQN 178
               K++L  +F+M DL + +  +GI+I    +   + +SQ++Y+ K+LS + M+N
Sbjct: 1105 NNFKRYLMEKFRMTDLNEIKHFIGIRI--EMQEDKIYLSQSAYVKKILSKFNMEN 1154

[Close]

BLAST of Cmc05g0133661 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 8.8e-22
Identity = 56/175 (32.00%), Postives = 95/175 (54.29%), Query Frame = 0


Query: 5    IRTLLSIVTFYDYEIWQMDVKTTFLNGNLEESIYIAQPEGFIENGQKQKVCKLQKSIYGL 64
            IR +L +     + I Q+DV   FL G L + +Y++QP GF++  +   VC+L+K+IYGL
Sbjct: 1030 IRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGL 1089

Query: 65   KQASRPWNIRFDTVIKSYGFEQNFDEPRVYKKVVNSIVAFLVLYVDDTLLIRNDVGYLTE 124
            KQA R W +   T + + GF  +  +  ++       + ++++YVDD L+  ND   L  
Sbjct: 1090 KQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKH 1149

Query: 125  IKKWLARQFQMKDLEDAQFVLGIQIVWNRKNRTLAMSQASYIDKMLSIYKMQNSK 180
                L+++F +K+ ED  + LGI+    R  + L +SQ  Y   +L+   M  +K
Sbjct: 1150 TLDALSQRFSVKEHEDLHYFLGIEA--KRVPQGLHLSQRRYTLDLLARTNMLTAK 1202

[Close]

BLAST of Cmc05g0133661 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.0e-21
Identity = 57/175 (32.57%), Postives = 94/175 (53.71%), Query Frame = 0


Query: 5    IRTLLSIVTFYDYEIWQMDVKTTFLNGNLEESIYIAQPEGFIENGQKQKVCKLQKSIYGL 64
            IR +L +     + I Q+DV   FL G L + +Y++QP GFI+  +   VCKL+K++YGL
Sbjct: 1047 IRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGL 1106

Query: 65   KQASRPWNIRFDTVIKSYGFEQNFDEPRVYKKVVNSIVAFLVLYVDDTLLIRNDVGYLTE 124
            KQA R W +     + + GF  +  +  ++       + ++++YVDD L+  ND   L  
Sbjct: 1107 KQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHN 1166

Query: 125  IKKWLARQFQMKDLEDAQFVLGIQIVWNRKNRTLAMSQASYIDKMLSIYKMQNSK 180
                L+++F +KD E+  + LGI+    R    L +SQ  YI  +L+   M  +K
Sbjct: 1167 TLDNLSQRFSVKDHEELHYFLGIEA--KRVPTGLHLSQRRYILDLLARTNMITAK 1219

[Close]

BLAST of Cmc05g0133661 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 85.9 bits (211), Expect = 5.5e-16
Identity = 49/150 (32.67%), Postives = 73/150 (48.67%), Query Frame = 0


Query: 22  MDVKTTFLNGNLEESIYIAQPEGFIENGQKQKVCKLQKSIYGLKQASRPWNIRFDTVIKS 81
           MDV T FLN  ++E IY+ QP GF+       V +L   +YGLKQA   WN   +  +K 
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 82  YGFEQNFDEPRVYKKVVNSIVAFLVLYVDDTLLIRNDVGYLTEIKKWLARQFQMKDLEDA 141
            GF ++  E  +Y +  +    ++ +YVDD L+          +K+ L + + MKDL   
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 142 QFVLGIQIVWNRKNRTLAMSQASYIDKMLS 172
              LG+ I     N  + +S   YI K  S
Sbjct: 121 DKFLGLNI-HQSSNGDITLSLQDYIAKAAS 149

[Close]

BLAST of Cmc05g0133661 vs. ExPASy TrEMBL
Match: A0A5D3CDT9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G001020 PE=4 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 2.8e-87
Identity = 166/194 (85.57%), Postives = 176/194 (90.72%), Query Frame = 0


Query: 1   MLKLIRTLLSIVTFYDYEIWQMDVKTTFLNGNLEESIYIAQPEGFIENGQKQKVCKLQKS 60
           MLK IR LLSI TFYDYEIWQ+DVKT FLNGNLEESIY+AQPEGFI+ GQ+QK+CK QKS
Sbjct: 1   MLKSIRILLSIATFYDYEIWQIDVKTAFLNGNLEESIYMAQPEGFIKKGQEQKICKFQKS 60

Query: 61  IYGLKQASRPWNIRFDTVIKSYGFEQNFDEPRVYKKVVNSIVAFLVLYVDDTLLIRNDVG 120
           IYGLKQASR WNIRFDT IKSYGFEQN D+P VYKKVVNSIVAFLVLYVDD LL+ NDVG
Sbjct: 61  IYGLKQASRSWNIRFDTAIKSYGFEQNVDKPCVYKKVVNSIVAFLVLYVDDILLVGNDVG 120

Query: 121 YLTEIKKWLARQFQMKDLEDAQFVLGIQIVWNRKNRTLAMSQASYIDKMLSIYKMQNSKK 180
           YLT+IKKWLA QFQMKD  DAQ+VLGIQIV NRKNRTLAMS+ASYIDKMLS YKMQNSKK
Sbjct: 121 YLTDIKKWLATQFQMKDFGDAQYVLGIQIVRNRKNRTLAMSRASYIDKMLSRYKMQNSKK 180

Query: 181 GLLLYRYGIHLSKE 195
           GLL YRYGIHLSKE
Sbjct: 181 GLLPYRYGIHLSKE 194

[Close]

BLAST of Cmc05g0133661 vs. ExPASy TrEMBL
Match: A0A5D3DKH2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00740 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 1.7e-84
Identity = 162/194 (83.51%), Postives = 175/194 (90.21%), Query Frame = 0


Query: 1   MLKLIRTLLSIVTFYDYEIWQMDVKTTFLNGNLEESIYIAQPEGFIENGQKQKVCKLQKS 60
           MLK IR LLSI TFYDYEIWQMDVKT FLNGNLE S+Y+AQP+GFI+NGQ+QKVCKLQKS
Sbjct: 1   MLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEGSVYMAQPKGFIKNGQEQKVCKLQKS 60

Query: 61  IYGLKQASRPWNIRFDTVIKSYGFEQNFDEPRVYKKVVNSIVAFLVLYVDDTLLIRNDVG 120
           IY LKQASR WNI+FDTVIK+YGFEQN +EPRVYKKVVNSIVAFLVLYVDD LLI NDVG
Sbjct: 61  IYDLKQASRSWNIKFDTVIKTYGFEQNVEEPRVYKKVVNSIVAFLVLYVDDILLIGNDVG 120

Query: 121 YLTEIKKWLARQFQMKDLEDAQFVLGIQIVWNRKNRTLAMSQASYIDKMLSIYKMQNSKK 180
           YLT+I+KWLA QFQMK L DAQ+VLGIQIV NRKNRTL MSQASYIDKMLS YK+Q S K
Sbjct: 121 YLTDIEKWLATQFQMKYLGDAQYVLGIQIVRNRKNRTLVMSQASYIDKMLSRYKIQKSNK 180

Query: 181 GLLLYRYGIHLSKE 195
           GLL YRYGIHLSK+
Sbjct: 181 GLLSYRYGIHLSKK 194

[Close]

BLAST of Cmc05g0133661 vs. ExPASy TrEMBL
Match: A0A5A7V4T1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G002110 PE=4 SV=1)

HSP 1 Score: 318.9 bits (816), Expect = 1.4e-83
Identity = 161/194 (82.99%), Postives = 174/194 (89.69%), Query Frame = 0


Query: 1   MLKLIRTLLSIVTFYDYEIWQMDVKTTFLNGNLEESIYIAQPEGFIENGQKQKVCKLQKS 60
           MLK IR LLSI TFYDYEIWQMDVKT FLNGNLE S+Y+AQP+GFI+NGQ+QKVCKLQKS
Sbjct: 1   MLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEGSVYMAQPKGFIKNGQEQKVCKLQKS 60

Query: 61  IYGLKQASRPWNIRFDTVIKSYGFEQNFDEPRVYKKVVNSIVAFLVLYVDDTLLIRNDVG 120
           IY LKQASR WNI+FDTVIK+YGFEQN +EP VYKKVVNSIVAFLVLYVDD LLI NDVG
Sbjct: 61  IYDLKQASRSWNIKFDTVIKTYGFEQNVEEPCVYKKVVNSIVAFLVLYVDDILLIGNDVG 120

Query: 121 YLTEIKKWLARQFQMKDLEDAQFVLGIQIVWNRKNRTLAMSQASYIDKMLSIYKMQNSKK 180
           YLT+I+KWLA QFQMK L DAQ+VLGIQIV NRKNRTL MSQASYIDKMLS YK+Q S K
Sbjct: 121 YLTDIEKWLATQFQMKYLGDAQYVLGIQIVRNRKNRTLVMSQASYIDKMLSRYKIQKSNK 180

Query: 181 GLLLYRYGIHLSKE 195
           GLL YRYGIHLSK+
Sbjct: 181 GLLSYRYGIHLSKK 194

[Close]

BLAST of Cmc05g0133661 vs. ExPASy TrEMBL
Match: A0A5A7TTA2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001350 PE=4 SV=1)

HSP 1 Score: 318.2 bits (814), Expect = 2.4e-83
Identity = 159/194 (81.96%), Postives = 172/194 (88.66%), Query Frame = 0


Query: 1   MLKLIRTLLSIVTFYDYEIWQMDVKTTFLNGNLEESIYIAQPEGFIENGQKQKVCKLQKS 60
           M+K IR LLSI TFYDYEIWQMDVKT FLNGNLEESIY+ QPEGFI+ GQ+QKVCKLQKS
Sbjct: 224 MIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQPEGFIQKGQEQKVCKLQKS 283

Query: 61  IYGLKQASRPWNIRFDTVIKSYGFEQNFDEPRVYKKVVNSIVAFLVLYVDDTLLIRNDVG 120
           IYGLKQASR WNIRFDT IKSYGFEQN DEP VYK+++NS VAFLVLYVDD LLI N+V 
Sbjct: 284 IYGLKQASRSWNIRFDTGIKSYGFEQNVDEPCVYKRIINSTVAFLVLYVDDILLIGNEVD 343

Query: 121 YLTEIKKWLARQFQMKDLEDAQFVLGIQIVWNRKNRTLAMSQASYIDKMLSIYKMQNSKK 180
           +LT+IK+WL  QFQMKDL  AQ+VLGIQIV NRKN+TLAMSQ SYIDKMLS YKMQNSKK
Sbjct: 344 HLTDIKEWLDTQFQMKDLGSAQYVLGIQIVQNRKNKTLAMSQTSYIDKMLSRYKMQNSKK 403

Query: 181 GLLLYRYGIHLSKE 195
           GLL YRYGIHLSKE
Sbjct: 404 GLLPYRYGIHLSKE 417

[Close]

BLAST of Cmc05g0133661 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 315.5 bits (807), Expect = 1.6e-82
Identity = 157/194 (80.93%), Postives = 172/194 (88.66%), Query Frame = 0


Query: 1    MLKLIRTLLSIVTFYDYEIWQMDVKTTFLNGNLEESIYIAQPEGFIENGQKQKVCKLQKS 60
            MLK IR LLSI TFY+YEIWQMDVKT FLNGNLEESIY+ QPEGFI   Q+QKVCKLQKS
Sbjct: 894  MLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIYMVQPEGFIAQDQEQKVCKLQKS 953

Query: 61   IYGLKQASRPWNIRFDTVIKSYGFEQNFDEPRVYKKVVNSIVAFLVLYVDDTLLIRNDVG 120
            IYGLKQASR WNIRFDT IKSYGFEQN DEP VYKK+VNS+VAFL+LYVDD LLI NDV 
Sbjct: 954  IYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIVNSVVAFLILYVDDILLIGNDVE 1013

Query: 121  YLTEIKKWLARQFQMKDLEDAQFVLGIQIVWNRKNRTLAMSQASYIDKMLSIYKMQNSKK 180
            YLT++KKWL  QFQMKDL +AQ++LGIQIV NRKN+TLAMSQASYIDK+LS YKMQNSKK
Sbjct: 1014 YLTDVKKWLNTQFQMKDLGEAQYILGIQIVRNRKNKTLAMSQASYIDKVLSRYKMQNSKK 1073

Query: 181  GLLLYRYGIHLSKE 195
            G L +R+GIHLSKE
Sbjct: 1074 GQLPFRHGIHLSKE 1087

[Close]

BLAST of Cmc05g0133661 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 104.8 bits (260), Expect = 8.2e-23
Identity = 50/152 (32.89%), Postives = 91/152 (59.87%), Query Frame = 0


Query: 2   LKLIRTLLSIVTFYDYEIWQMDVKTTFLNGNLEESIYIAQPEGFI----ENGQKQKVCKL 61
           L  ++ +L+I   Y++ + Q+D+   FLNG+L+E IY+  P G+     ++     VC L
Sbjct: 173 LTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYL 232

Query: 62  QKSIYGLKQASRPWNIRFDTVIKSYGFEQNFDEPRVYKKVVNSIVAFLVLYVDDTLLIRN 121
           +KSIYGLKQASR W ++F   +  +GF Q+  +   + K+  ++   +++YVDD ++  N
Sbjct: 233 KKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSN 292

Query: 122 DVGYLTEIKKWLARQFQMKDLEDAQFVLGIQI 150
           +   + E+K  L   F+++DL   ++ LG++I
Sbjct: 293 NDAAVDELKSQLKSCFKLRDLGPLKYFLGLEI 324

The following BLAST results are available for this feature:

BLAST of Cmc05g0133661 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK09500.1	5.8e-87	85.57	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK24002.1	3.5e-84	83.51	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0061927.1	3.0e-83	82.99	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0045356.1	5.1e-83	81.96	gag/pol protein [Cucumis melo var. makuwa]	[more]
ADJ18449.1	3.3e-82	80.93	gag/pol protein, partial [Bryonia dioica]	[more]

BLAST of Cmc05g0133661 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.0e-38	46.59	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	8.5e-25	37.14	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	8.8e-22	32.00	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	2.0e-21	32.57	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P25600	5.5e-16	32.67	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc05g0133661 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CDT9	2.8e-87	85.57	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold499G0010...	[more]
A0A5D3DKH2	1.7e-84	83.51	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G0074...	[more]
A0A5A7V4T1	1.4e-83	82.99	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G00211...	[more]
A0A5A7TTA2	2.4e-83	81.96	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G0013...	[more]
E2GK51	1.6e-82	80.93	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]

BLAST of Cmc05g0133661 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	8.2e-23	32.89	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 2..178 e-value: 1.3E-42 score: 146.1
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 6..179
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 16..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc05g0133661.1	Cmc05g0133661.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding