Cmc05g0133591 (gene) Melon (Charmono) v1.1

Overview
NameCmc05g0133591
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
LocationCMiso1.1chr05: 14400024 .. 14400950 (-)
RNA-Seq ExpressionCmc05g0133591
SyntenyCmc05g0133591
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAACAGAAGGTAATAAAGAAACTCATGACTGGGTTCTTGATTCAGGGTGTTCATTTCATATGACACCATTAAAGGGTTGGTTTACAACATACAAAGCTTGGGATGGAGGCCTAGTATACATGGGAAATGACAATGCTTGCAAAATTATAGGTATTGGTTCTGTTACACTTATATTCAAAGATGAGACAACAACACTTCTTAGGAATGGAAGACATGTTCCATCCTTGAAAAGAAATTTAATTTCTCTTGGTATGCTAAACTCTATAGGCTGCGAATACAGACGCTCTGCTAGAAAGTTTGAAATAATTATTAGAAACTCCAAGATTGTTCTTGTTGGTACAAAAATAAATGGACTCTTTCTTATCAAAGAAGTGTCCATGAATCATGCTGCATTAATTGTCTCTAATGATAAACTAACTGAAGGAGATTTGTGGCATAAGAGACTTTCCCATATAAGTAGAAAGGGATTGAAAATATTTTCAGAACATGGTATTATTCCTAAAGAAGTAGCTGAAAAACTCTCTTTCTGTGAGCACTGTGTAATTAGTAAGTCCACAAGGCAAAATTTTCAAAAGGCTGAACACAACACCAAAGACATCCTAGAGTACATCCATTCCGACCTATGGGGACCCTCACAAACACCATCTTTAAACAATTCCAGGTATTTTCTAACCTTTACTGATGATTATTCTAGAAAAAGTTGGGTTTACTTCTTAAAAACTAAAGACCAAACTCTAGAAAAGTTTAAAGAATGGAAAATCACGATAGAAAAACATACTTCTAAACAGATTAAATGCTTAAGAACTGATAATGGTTTAAAATTTTGTTGTGAGGAGTTCAATAATTTTTGTAAAGAACATGGAATAAAGAGACATAGGACTGTTAGATATACCCCCAACAAAATGGTGTTGCTGAAAGATTAA

mRNA sequence

ATGAAAACAGAAGGTAATAAAGAAACTCATGACTGGGTTCTTGATTCAGGGTGTTCATTTCATATGACACCATTAAAGGGTTGGTTTACAACATACAAAGCTTGGGATGGAGGCCTAGTATACATGGGAAATGACAATGCTTGCAAAATTATAGGTATTGGTTCTGTTACACTTATATTCAAAGATGAGACAACAACACTTCTTAGGAATGGAAGACATGTTCCATCCTTGAAAAGAAATTTAATTTCTCTTGGTATGCTAAACTCTATAGGCTGCGAATACAGACGCTCTGCTAGAAAGTTTGAAATAATTATTAGAAACTCCAAGATTGTTCTTGTTGGTACAAAAATAAATGGACTCTTTCTTATCAAAGAAGTGTCCATGAATCATGCTGCATTAATTGTCTCTAATGATAAACTAACTGAAGGAGATTTGTGGCATAAGAGACTTTCCCATATAAGTAGAAAGGGATTGAAAATATTTTCAGAACATGGTATTATTCCTAAAGAAGTAGCTGAAAAACTCTCTTTCTGTGAGCACTGTGTAATTAGTAAGTCCACAAGGCAAAATTTTCAAAAGGCTGAACACAACACCAAAGACATCCTAGAGTACATCCATTCCGACCTATGGGGACCCTCACAAACACCATCTTTAAACAATTCCAGGTATTTTCTAACCTTTACTGATGATTATTCTAGAAAAAGTTGGGTTTACTTCTTAAAAACTAAAGACCAAACTCTAGAAAAGTTTAAAGAATGGAAAATCACGATAGAAAAACATACTTCTAAACAGATTAAATGCTTAAGAACTGATAATGGTTTAAAATTTTGTTGTGAGGAGTTCAATAATTTTTGTAAAGAACATGGAATAAAGAGACATAGGACTGTTAGATATACCCCCAACAAAATGGTGTTGCTGAAAGATTAA

Coding sequence (CDS)

ATGAAAACAGAAGGTAATAAAGAAACTCATGACTGGGTTCTTGATTCAGGGTGTTCATTTCATATGACACCATTAAAGGGTTGGTTTACAACATACAAAGCTTGGGATGGAGGCCTAGTATACATGGGAAATGACAATGCTTGCAAAATTATAGGTATTGGTTCTGTTACACTTATATTCAAAGATGAGACAACAACACTTCTTAGGAATGGAAGACATGTTCCATCCTTGAAAAGAAATTTAATTTCTCTTGGTATGCTAAACTCTATAGGCTGCGAATACAGACGCTCTGCTAGAAAGTTTGAAATAATTATTAGAAACTCCAAGATTGTTCTTGTTGGTACAAAAATAAATGGACTCTTTCTTATCAAAGAAGTGTCCATGAATCATGCTGCATTAATTGTCTCTAATGATAAACTAACTGAAGGAGATTTGTGGCATAAGAGACTTTCCCATATAAGTAGAAAGGGATTGAAAATATTTTCAGAACATGGTATTATTCCTAAAGAAGTAGCTGAAAAACTCTCTTTCTGTGAGCACTGTGTAATTAGTAAGTCCACAAGGCAAAATTTTCAAAAGGCTGAACACAACACCAAAGACATCCTAGAGTACATCCATTCCGACCTATGGGGACCCTCACAAACACCATCTTTAAACAATTCCAGGTATTTTCTAACCTTTACTGATGATTATTCTAGAAAAAGTTGGGTTTACTTCTTAAAAACTAAAGACCAAACTCTAGAAAAGTTTAAAGAATGGAAAATCACGATAGAAAAACATACTTCTAAACAGATTAAATGCTTAAGAACTGATAATGGTTTAAAATTTTGTTGTGAGGAGTTCAATAATTTTTGTAAAGAACATGGAATAAAGAGACATAGGACTGTTAGATATACCCCCAACAAAATGGTGTTGCTGAAAGATTAA

Protein sequence

MKTEGNKETHDWVLDSGCSFHMTPLKGWFTTYKAWDGGLVYMGNDNACKIIGIGSVTLIFKDETTTLLRNGRHVPSLKRNLISLGMLNSIGCEYRRSARKFEIIIRNSKIVLVGTKINGLFLIKEVSMNHAALIVSNDKLTEGDLWHKRLSHISRKGLKIFSEHGIIPKEVAEKLSFCEHCVISKSTRQNFQKAEHNTKDILEYIHSDLWGPSQTPSLNNSRYFLTFTDDYSRKSWVYFLKTKDQTLEKFKEWKITIEKHTSKQIKCLRTDNGLKFCCEEFNNFCKEHGIKRHRTVRYTPNKMVLLKD
Homology
[Close]
BLAST of Cmc05g0133591 vs. NCBI nr
Match: KAA0059756.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYJ99770.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 383.3 bits (983), Expect = 2.0e-102
Identity = 191/231 (82.68%), Postives = 204/231 (88.31%), Query Frame = 0 

Query: 22  MTPLKGWFTTYKAWDGGLVYMGNDNACKIIGIGSVTLIFKDETTTLLRNGRHVPSLKRNL 81
           MTPLK WFTTYK WD GL+YMGND A KI+GIGSVTL FKD TTTLLRN RHVPSLK NL
Sbjct: 1   MTPLKRWFTTYKVWDEGLLYMGNDKAYKIVGIGSVTLKFKDGTTTLLRNVRHVPSLKINL 60

Query: 82  ISLGMLNSIGCEYRRSARKFEIIIRNSKIVLVGTKINGLFLIKEVSMNHAALIVSNDKLT 141
           ISLGML+SIGCEY+ S R+FE I ++SKIVL GTKINGLF IKEVSMNH  LIVSNDKLT
Sbjct: 61  ISLGMLDSIGCEYKGSVRRFE-IFKDSKIVLGGTKINGLFHIKEVSMNHVVLIVSNDKLT 120

Query: 142 EGDLWHKRLSHISRKGLKIFSEHGIIPKEVAEKLSFCEHCVISKSTRQNFQKAEHNTKDI 201
           EGDLWH RLS IS KGLKI SE GIIPK VAEKLSFCEHCV+ KSTRQ+FQKA+HNTKDI
Sbjct: 121 EGDLWHIRLSRISGKGLKILSEQGIIPKGVAEKLSFCEHCVVGKSTRQSFQKADHNTKDI 180

Query: 202 LEYIHSDLWGPSQTPSLNNSRYFLTFTDDYSRKSWVYFLKTKDQTLEKFKE 253
           L+YIHS+LWGPSQTPSLNNS YFLTFTDD SRKSWVYFLK+KDQTL KFKE
Sbjct: 181 LDYIHSNLWGPSQTPSLNNSMYFLTFTDDCSRKSWVYFLKSKDQTLGKFKE 230

[Close]
BLAST of Cmc05g0133591 vs. NCBI nr
Match: RVW81650.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 298.5 bits (763), Expect = 6.6e-77
Identity = 143/298 (47.99%), Postives = 192/298 (64.43%), Query Frame = 0 

Query: 2   KTEGNKETHDWVLDSGCSFHMTPLKGWFTTYKAWDGGLVYMGNDNACKIIGIGSVTLIFK 61
           KT+G     +W+LDSGC FHM P+K WF  +K  DGG V +GN+  CKI+G G+V +   
Sbjct: 245 KTQGGL-GKEWILDSGCFFHMCPIKAWFEDFKEADGGYVLLGNNKHCKILGTGTVRIKHY 304

Query: 62  DETTTLLRNGRHVPSLKRNLISLGMLNSIGCEYRRSARKFEIIIRNSKIVLVGTKINGLF 121
           D    +L + R++P LKRNLISLGML+  G  ++        + R S  V+ GT  NGL+
Sbjct: 305 DGIERVLEDVRYIPELKRNLISLGMLDKSGYTFKSEPNSLR-VARGSLTVMKGTIKNGLY 364

Query: 122 LIKEVSMNHAALIVSNDKLTEGDLWHKRLSHISRKGLKIFSEHGIIPKEVAEKLSFCEHC 181
            +   ++      V  + +    LWH+RL HIS +GL+   + G++       L FCEHC
Sbjct: 365 TLIGQTVTGKVSTVQKEDVGTTKLWHQRLGHISHRGLQELEKQGVLGNYKLTDLPFCEHC 424

Query: 182 VISKSTRQNFQKAEHNTKDILEYIHSDLWGPSQTPSLNNSRYFLTFTDDYSRKSWVYFLK 241
           V  K+TR  F KA H T++ L+YIHSDLWGPS+ PS+  +RYFLT  DDYSRK W+YFLK
Sbjct: 425 VFGKATRVKFAKAIHETQNQLDYIHSDLWGPSRVPSIGGARYFLTLIDDYSRKVWIYFLK 484

Query: 242 TKDQTLEKFKEWKITIEKHTSKQIKCLRTDNGLKFCCEEFNNFCKEHGIKRHRTVRYT 300
            K +T  KFKEWKI +E   S+++K LRTDNGL+F   +FN+FC++ GI RHRTVRYT
Sbjct: 485 NKSETFLKFKEWKILVETQISRKVKKLRTDNGLEFLSNDFNSFCQKEGIARHRTVRYT 540

[Close]
BLAST of Cmc05g0133591 vs. NCBI nr
Match: RVW75706.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 297.0 bits (759), Expect = 1.9e-76
Identity = 139/292 (47.60%), Postives = 189/292 (64.73%), Query Frame = 0 

Query: 11  DWVLDSGCSFHMTPLKGWFTTYKAWDGGLVYMGNDNACKIIGIGSVTLIFKDETTTLLRN 70
           +W+LDSGCSFHM P+K WF  +K  DGG V +GN+  CKI+G G+V +   D    +L +
Sbjct: 205 EWILDSGCSFHMCPIKAWFEDFKEADGGYVLLGNNKHCKILGTGTVRIKHYDGIERVLED 264

Query: 71  GRHVPSLKRNLISLGMLNSIGCEYRRSARKFEIIIRNSKIVLVGTKINGLFLIKEVSMNH 130
            R++P LKRNLISLGML+  G  ++        ++R S  V+ GT  NGL+ +   ++  
Sbjct: 265 VRYIPELKRNLISLGMLDKSGYTFKSEPNSLR-VVRGSLTVMKGTIKNGLYTLIGQTVTG 324

Query: 131 AALIVSNDKLTEGDLWHKRLSHISRKGLKIFSEHGIIPKEVAEKLSFCEHCVISKSTRQN 190
               +  + +    LWH+RL HIS +GL+   + G++       L FCEHCV  K+TR  
Sbjct: 325 KVSTMLKEDVGTTKLWHQRLGHISHRGLQELEKQGVLGNYKLTDLPFCEHCVFGKATRVK 384

Query: 191 FQKAEHNTKDILEYIHSDLWGPSQTPSLNNSRYFLTFTDDYSRKSWVYFLKTKDQTLEKF 250
           F KA H T+  L+YIHSDLW PS+ PS+  +RYFLT  DDYSRK W+YFLK K +T  KF
Sbjct: 385 FAKAIHETQYQLDYIHSDLWEPSRVPSIGGARYFLTLIDDYSRKVWIYFLKNKSETFLKF 444

Query: 251 KEWKITIEKHTSKQIKCLRTDNGLKFCCEEFNNFCKEHGIKRHRTVRYTPNK 303
           KEWKI +E  T +++K LRTDNGL+F   +FN+FC++ GI  HRTVRYTP +
Sbjct: 445 KEWKILVETQTGRKVKKLRTDNGLEFLSNDFNSFCQKEGIATHRTVRYTPQQ 495

[Close]
BLAST of Cmc05g0133591 vs. NCBI nr
Match: KAG9441834.1 (hypothetical protein H6P81_017688 [Aristolochia fimbriata])

HSP 1 Score: 289.7 bits (740), Expect = 3.1e-74
Identity = 149/304 (49.01%), Postives = 189/304 (62.17%), Query Frame = 0 

Query: 2   KTEGNKETHDWVLDSGCSFHMTPLKGWFTTYKAWDGGLVYMGNDNACKIIGIGSVTLIFK 61
           KT G  E   W LDSGCS+HM   + WF+ Y A DGG+V M N++ C+ IG GSV L   
Sbjct: 91  KTNGCDE---WTLDSGCSYHMCSHRHWFSAYDAVDGGVVMMANNSTCRAIGKGSVQLKMN 150

Query: 62  DETTTLLRNGRHVPSLKRNLISLGMLNSIGCEYRRSARKFEIIIRNSKIVLVGTKINGLF 121
           D     L + R+VP LKRNLISLG L+SIGC+Y       + + R    V+ G KI  L+
Sbjct: 151 DGVIRTLTDVRYVPDLKRNLISLGTLDSIGCKYSAEGGIMK-VSRGVLTVMKGRKIGTLY 210

Query: 122 LIKEVSMNHAALIVSNDKLTEGD---LWHKRLSHISRKGLKIFSEHGIIPKEVAEKLSFC 181
           ++ + S    +  V++  LTE +   LWH RL H+S +GL + S  G++  +   K+ FC
Sbjct: 211 VL-DGSTVTGSTTVASASLTESETTRLWHLRLGHMSERGLNLLSRRGLLCGQSTGKIDFC 270

Query: 182 EHCVISKSTRQNFQKAEHNTKDILEYIHSDLWGPSQTPSLNNSRYFLTFTDDYSRKSWVY 241
           EHCV  K  R  F  A H TK  L+Y+HSDLWGPSQ  S   ++Y LTF DD+SRK WVY
Sbjct: 271 EHCVFGKHKRVAFNTAIHRTKGTLDYVHSDLWGPSQVVSKGGAKYLLTFIDDFSRKVWVY 330

Query: 242 FLKTKDQTLEKFKEWKITIEKHTSKQIKCLRTDNGLKFCCEEFNNFCKEHGIKRHRTVRY 301
           FLK K      FK+WK  IEK T KQIK LRTDNGL+FC  +FN FC+  GI RHRTVR+
Sbjct: 331 FLKAKSDVFTIFKQWKCMIEKQTGKQIKRLRTDNGLEFCSGKFNKFCENEGIVRHRTVRH 389

Query: 302 TPNK 303
           TP +
Sbjct: 391 TPQQ 389

[Close]
BLAST of Cmc05g0133591 vs. NCBI nr
Match: KAG8492609.1 (hypothetical protein CXB51_010030 [Gossypium anomalum])

HSP 1 Score: 289.3 bits (739), Expect = 4.0e-74
Identity = 141/300 (47.00%), Postives = 187/300 (62.33%), Query Frame = 0 

Query: 6   NKETHDWVLDSGCSFHMTPLKGWFTTYKAWDGGLVYMGNDNACKIIGIGSVTLIFKDETT 65
           +K + +W+LDSGC+FHM+P + WFTTYK    G+V MGN+ +CKI G+G++ +   D   
Sbjct: 295 SKVSEEWILDSGCTFHMSPNRDWFTTYKTVSEGVVLMGNNASCKIAGVGTIKVKMFDGVV 354

Query: 66  TLLRNGRHVPSLKRNLISLGMLNSIGCEYRRSARKFEIIIRNSKIVLVGTKINGLFLIKE 125
             L + R+VP LKRNLISL  L+S G  Y   +   + I + S +V+ G +      + +
Sbjct: 355 RTLSDVRYVPELKRNLISLSTLDSKGYRYTAESGVLK-ISKGSLVVMKGQRKTAKLYVLQ 414

Query: 126 VSMNHAALIVSNDKLTEGD---LWHKRLSHISRKGLKIFSEHGIIPKEVAEKLSFCEHCV 185
            S       V++  L++ D   LWH RL H+S  G+   S+ G++  +   KL+FCEHCV
Sbjct: 415 CSTVTGDAAVASSSLSDDDITKLWHMRLGHMSENGMVELSKRGLLDGQGICKLNFCEHCV 474

Query: 186 ISKSTRQNFQKAEHNTKDILEYIHSDLWGPSQTPSLNNSRYFLTFTDDYSRKSWVYFLKT 245
             K  R  F +  HNTK+ LEYIHSDLWGPS+ PS   + Y LTF DD+SRK W +FLK 
Sbjct: 475 FGKQKRVRFTRGIHNTKETLEYIHSDLWGPSRVPSRGRANYMLTFIDDFSRKVWAFFLKQ 534

Query: 246 KDQTLEKFKEWKITIEKHTSKQIKCLRTDNGLKFCCEEFNNFCKEHGIKRHRTVRYTPNK 303
           K      FK WKI IEK T KQIK LRTDNGL+FC +EFN  CK  GI RH TVR+TP +
Sbjct: 535 KSDVFSAFKSWKIMIEKQTGKQIKYLRTDNGLEFCSDEFNRLCKSEGIVRHLTVRHTPQQ 593

[Close]
BLAST of Cmc05g0133591 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 4.2e-50
Identity = 103/290 (35.52%), Postives = 164/290 (56.55%), Query Frame = 0 

Query: 11  DWVLDSGCSFHMTPLKGWFTTYKAWDGGLVYMGNDNACKIIGIGSVTLIFKDETTTLLRN 70
           +WV+D+  S H TP++  F  Y A D G V MGN +  KI GIG + +      T +L++
Sbjct: 293 EWVVDTAASHHATPVRDLFCRYVAGDFGTVKMGNTSYSKIAGIGDICIKTNVGCTLVLKD 352

Query: 71  GRHVPSLKRNLISLGMLNSIGCEYRRSARKFEIIIRNSKIVLVGTKINGLFLIKEVSMNH 130
            RHVP L+ NLIS   L+  G E   + +K+   +    +V+      G        +  
Sbjct: 353 VRHVPDLRMNLISGIALDRDGYESYFANQKWR--LTKGSLVIAKGVARGTLYRTNAEICQ 412

Query: 131 AALIVSNDKLTEGDLWHKRLSHISRKGLKIFSEHGIIPKEVAEKLSFCEHCVISKSTRQN 190
             L  + D+++  DLWHKR+ H+S KGL+I ++  +I       +  C++C+  K  R +
Sbjct: 413 GELNAAQDEISV-DLWHKRMGHMSEKGLQILAKKSLISYAKGTTVKPCDYCLFGKQHRVS 472

Query: 191 FQKAEHNTKDILEYIHSDLWGPSQTPSLNNSRYFLTFTDDYSRKSWVYFLKTKDQTLEKF 250
           FQ +     +IL+ ++SD+ GP +  S+  ++YF+TF DD SRK WVY LKTKDQ  + F
Sbjct: 473 FQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVF 532

Query: 251 KEWKITIEKHTSKQIKCLRTDNGLKFCCEEFNNFCKEHGIKRHRTVRYTP 301
           +++   +E+ T +++K LR+DNG ++   EF  +C  HGI+  +TV  TP
Sbjct: 533 QKFHALVERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTP 579

[Close]
BLAST of Cmc05g0133591 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.6e-23
Identity = 84/296 (28.38%), Postives = 141/296 (47.64%), Query Frame = 0 

Query: 9   THDWVLDSGCSFHMTPLKGWFTTYKAWDGG-LVYMGNDNACKIIGIGSVTLIFKDETTTL 68
           +++W+LDSG + H+T      + ++ + GG  V + + +   I   GS +L  K      
Sbjct: 328 SNNWLLDSGATHHITSDFNNLSLHQPYTGGDDVMVADGSTIPISHTGSTSLSTKSRPLN- 387

Query: 69  LRNGRHVPSLKRNLISLGML-NSIGCEYRRSARKFEIIIRNSKI-VLVGTKINGLFLIKE 128
           L N  +VP++ +NLIS+  L N+ G         F++   N+ + +L G   + L+    
Sbjct: 388 LHNILYVPNIHKNLISVYRLCNANGVSVEFFPASFQVKDLNTGVPLLQGKTKDELYEWPI 447

Query: 129 VSMNHAALIVSNDKLTEGDLWHKRLSHISRKGL-KIFSEHGIIPKEVAEKLSFCEHCVIS 188
            S    +L  S         WH RL H +   L  + S + +     + K   C  C+I+
Sbjct: 448 ASSQPVSLFASPSSKATHSSWHARLGHPAPSILNSVISNYSLSVLNPSHKFLSCSDCLIN 507

Query: 189 KSTRQNFQKAEHNTKDILEYIHSDLWGPSQTPSLNNSRYFLTFTDDYSRKSWVYFLKTKD 248
           KS +  F ++  N+   LEYI+SD+W  S   S +N RY++ F D ++R +W+Y LK K 
Sbjct: 508 KSNKVPFSQSTINSTRPLEYIYSDVWS-SPILSHDNYRYYVIFVDHFTRYTWLYPLKQKS 567

Query: 249 QTLEKFKEWKITIEKHTSKQIKCLRTDNGLKFCCEEFNNFCKEHGIKRHRTVRYTP 301
           Q  E F  +K  +E     +I    +DNG +F       +  +HGI    +  +TP
Sbjct: 568 QVKETFITFKNLLENRFQTRIGTFYSDNGGEFVA--LWEYFSQHGISHLTSPPHTP 619

[Close]
BLAST of Cmc05g0133591 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 7.4e-23
Identity = 83/297 (27.95%), Postives = 143/297 (48.15%), Query Frame = 0 

Query: 10  HDWVLDSGCSFHMTPLKGWFTTYKAWDGG-LVYMGNDNACKIIGIGSVTLIFKDETTTLL 69
           ++W+LDSG + H+T      + ++ + GG  V + + +   I   GS +L     +   L
Sbjct: 308 NNWLLDSGATHHITSDFNNLSFHQPYTGGDDVMIADGSTIPITHTGSASLPTSSRSLD-L 367

Query: 70  RNGRHVPSLKRNLISLGML---NSIGCEYRRSARKFEIIIRNSKI-VLVGTKINGLFLIK 129
               +VP++ +NLIS+  L   N +  E+  ++  F++   N+ + +L G   + L+   
Sbjct: 368 NKVLYVPNIHKNLISVYRLCNTNRVSVEFFPAS--FQVKDLNTGVPLLQGKTKDELYEWP 427

Query: 130 EVSMNHAALIVSNDKLTEGDLWHKRLSHISRKGL-KIFSEHGIIPKEVAEKLSFCEHCVI 189
             S    ++  S         WH RL H S   L  + S H +     + KL  C  C I
Sbjct: 428 IASSQAVSMFASPCSKATHSSWHSRLGHPSLAILNSVISNHSLPVLNPSHKLLSCSDCFI 487

Query: 190 SKSTRQNFQKAEHNTKDILEYIHSDLWGPSQTPSLNNSRYFLTFTDDYSRKSWVYFLKTK 249
           +KS +  F  +   +   LEYI+SD+W  S   S++N RY++ F D ++R +W+Y LK K
Sbjct: 488 NKSHKVPFSNSTITSSKPLEYIYSDVWS-SPILSIDNYRYYVIFVDHFTRYTWLYPLKQK 547

Query: 250 DQTLEKFKEWKITIEKHTSKQIKCLRTDNGLKFCCEEFNNFCKEHGIKRHRTVRYTP 301
            Q  + F  +K  +E     +I  L +DNG +F      ++  +HGI    +  +TP
Sbjct: 548 SQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVV--LRDYLSQHGISHFTSPPHTP 598

[Close]
BLAST of Cmc05g0133591 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 87.8 bits (216), Expect = 2.3e-16
Identity = 56/198 (28.28%), Postives = 89/198 (44.95%), Query Frame = 0 

Query: 118 NGLFLIKEVSM-------NHAALIVSNDKLTEGDLWHKRLSHISR------KGLKIFSEH 177
           NGL ++K   M       N  A  ++        LWH+R  HIS       K   +FS+ 
Sbjct: 383 NGLMVVKNSGMLNNVPVINFQAYSINAKHKNNFRLWHERFGHISDGKLLEIKRKNMFSDQ 442

Query: 178 GIIPKEVAEKLSFCEHCVISKSTRQNFQKAEHNT--KDILEYIHSDLWGPSQTPSLNNSR 237
            ++   +      CE C+  K  R  F++ +  T  K  L  +HSD+ GP    +L++  
Sbjct: 443 SLL-NNLELSCEICEPCLNGKQARLPFKQLKDKTHIKRPLFVVHSDVCGPITPVTLDDKN 502

Query: 238 YFLTFTDDYSRKSWVYFLKTKDQTLEKFKEWKITIEKHTSKQIKCLRTDNGLKFCCEEFN 297
           YF+ F D ++     Y +K K      F+++    E H + ++  L  DNG ++   E  
Sbjct: 503 YFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMR 562

Query: 298 NFCKEHGIKRHRTVRYTP 301
            FC + GI  H TV +TP
Sbjct: 563 QFCVKKGISYHLTVPHTP 579

[Close]
BLAST of Cmc05g0133591 vs. ExPASy Swiss-Prot
Match: P93293 (Uncharacterized mitochondrial protein AtMg00300 OS=Arabidopsis thaliana OX=3702 GN=AtMg00300 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.4e-15
Identity = 35/113 (30.97%), Postives = 64/113 (56.64%), Query Frame = 0 

Query: 104 IIRNSKIVLVGTKINGLFLIKEVSMNHAALIVSNDKLTEGDLWHKRLSHISRKGLKIFSE 163
           +++  + +L G + + L+++ + S+      ++     E  LWH RL+H+S++G+++  +
Sbjct: 31  VLKGCRTILKGNRHDSLYIL-QGSVETGESNLAETAKDETRLWHSRLAHMSQRGMELLVK 90

Query: 164 HGIIPKEVAEKLSFCEHCVISKSTRQNFQKAEHNTKDILEYIHSDLWGPSQTP 217
            G +       L FCE C+  K+ R NF   +H TK+ L+Y+HSDLWG    P
Sbjct: 91  KGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWGAPSVP 142

[Close]
BLAST of Cmc05g0133591 vs. ExPASy TrEMBL
Match: A0A5A7UZX2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold896G00070 PE=4 SV=1)

HSP 1 Score: 383.3 bits (983), Expect = 9.8e-103
Identity = 191/231 (82.68%), Postives = 204/231 (88.31%), Query Frame = 0 

Query: 22  MTPLKGWFTTYKAWDGGLVYMGNDNACKIIGIGSVTLIFKDETTTLLRNGRHVPSLKRNL 81
           MTPLK WFTTYK WD GL+YMGND A KI+GIGSVTL FKD TTTLLRN RHVPSLK NL
Sbjct: 1   MTPLKRWFTTYKVWDEGLLYMGNDKAYKIVGIGSVTLKFKDGTTTLLRNVRHVPSLKINL 60

Query: 82  ISLGMLNSIGCEYRRSARKFEIIIRNSKIVLVGTKINGLFLIKEVSMNHAALIVSNDKLT 141
           ISLGML+SIGCEY+ S R+FE I ++SKIVL GTKINGLF IKEVSMNH  LIVSNDKLT
Sbjct: 61  ISLGMLDSIGCEYKGSVRRFE-IFKDSKIVLGGTKINGLFHIKEVSMNHVVLIVSNDKLT 120

Query: 142 EGDLWHKRLSHISRKGLKIFSEHGIIPKEVAEKLSFCEHCVISKSTRQNFQKAEHNTKDI 201
           EGDLWH RLS IS KGLKI SE GIIPK VAEKLSFCEHCV+ KSTRQ+FQKA+HNTKDI
Sbjct: 121 EGDLWHIRLSRISGKGLKILSEQGIIPKGVAEKLSFCEHCVVGKSTRQSFQKADHNTKDI 180

Query: 202 LEYIHSDLWGPSQTPSLNNSRYFLTFTDDYSRKSWVYFLKTKDQTLEKFKE 253
           L+YIHS+LWGPSQTPSLNNS YFLTFTDD SRKSWVYFLK+KDQTL KFKE
Sbjct: 181 LDYIHSNLWGPSQTPSLNNSMYFLTFTDDCSRKSWVYFLKSKDQTLGKFKE 230

[Close]
BLAST of Cmc05g0133591 vs. ExPASy TrEMBL
Match: A0A438HB17 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_696 PE=4 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 3.2e-77
Identity = 143/298 (47.99%), Postives = 192/298 (64.43%), Query Frame = 0 

Query: 2   KTEGNKETHDWVLDSGCSFHMTPLKGWFTTYKAWDGGLVYMGNDNACKIIGIGSVTLIFK 61
           KT+G     +W+LDSGC FHM P+K WF  +K  DGG V +GN+  CKI+G G+V +   
Sbjct: 245 KTQGGL-GKEWILDSGCFFHMCPIKAWFEDFKEADGGYVLLGNNKHCKILGTGTVRIKHY 304

Query: 62  DETTTLLRNGRHVPSLKRNLISLGMLNSIGCEYRRSARKFEIIIRNSKIVLVGTKINGLF 121
           D    +L + R++P LKRNLISLGML+  G  ++        + R S  V+ GT  NGL+
Sbjct: 305 DGIERVLEDVRYIPELKRNLISLGMLDKSGYTFKSEPNSLR-VARGSLTVMKGTIKNGLY 364

Query: 122 LIKEVSMNHAALIVSNDKLTEGDLWHKRLSHISRKGLKIFSEHGIIPKEVAEKLSFCEHC 181
            +   ++      V  + +    LWH+RL HIS +GL+   + G++       L FCEHC
Sbjct: 365 TLIGQTVTGKVSTVQKEDVGTTKLWHQRLGHISHRGLQELEKQGVLGNYKLTDLPFCEHC 424

Query: 182 VISKSTRQNFQKAEHNTKDILEYIHSDLWGPSQTPSLNNSRYFLTFTDDYSRKSWVYFLK 241
           V  K+TR  F KA H T++ L+YIHSDLWGPS+ PS+  +RYFLT  DDYSRK W+YFLK
Sbjct: 425 VFGKATRVKFAKAIHETQNQLDYIHSDLWGPSRVPSIGGARYFLTLIDDYSRKVWIYFLK 484

Query: 242 TKDQTLEKFKEWKITIEKHTSKQIKCLRTDNGLKFCCEEFNNFCKEHGIKRHRTVRYT 300
            K +T  KFKEWKI +E   S+++K LRTDNGL+F   +FN+FC++ GI RHRTVRYT
Sbjct: 485 NKSETFLKFKEWKILVETQISRKVKKLRTDNGLEFLSNDFNSFCQKEGIARHRTVRYT 540

[Close]
BLAST of Cmc05g0133591 vs. ExPASy TrEMBL
Match: A0A438GU19 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2265 PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 9.3e-77
Identity = 139/292 (47.60%), Postives = 189/292 (64.73%), Query Frame = 0 

Query: 11  DWVLDSGCSFHMTPLKGWFTTYKAWDGGLVYMGNDNACKIIGIGSVTLIFKDETTTLLRN 70
           +W+LDSGCSFHM P+K WF  +K  DGG V +GN+  CKI+G G+V +   D    +L +
Sbjct: 205 EWILDSGCSFHMCPIKAWFEDFKEADGGYVLLGNNKHCKILGTGTVRIKHYDGIERVLED 264

Query: 71  GRHVPSLKRNLISLGMLNSIGCEYRRSARKFEIIIRNSKIVLVGTKINGLFLIKEVSMNH 130
            R++P LKRNLISLGML+  G  ++        ++R S  V+ GT  NGL+ +   ++  
Sbjct: 265 VRYIPELKRNLISLGMLDKSGYTFKSEPNSLR-VVRGSLTVMKGTIKNGLYTLIGQTVTG 324

Query: 131 AALIVSNDKLTEGDLWHKRLSHISRKGLKIFSEHGIIPKEVAEKLSFCEHCVISKSTRQN 190
               +  + +    LWH+RL HIS +GL+   + G++       L FCEHCV  K+TR  
Sbjct: 325 KVSTMLKEDVGTTKLWHQRLGHISHRGLQELEKQGVLGNYKLTDLPFCEHCVFGKATRVK 384

Query: 191 FQKAEHNTKDILEYIHSDLWGPSQTPSLNNSRYFLTFTDDYSRKSWVYFLKTKDQTLEKF 250
           F KA H T+  L+YIHSDLW PS+ PS+  +RYFLT  DDYSRK W+YFLK K +T  KF
Sbjct: 385 FAKAIHETQYQLDYIHSDLWEPSRVPSIGGARYFLTLIDDYSRKVWIYFLKNKSETFLKF 444

Query: 251 KEWKITIEKHTSKQIKCLRTDNGLKFCCEEFNNFCKEHGIKRHRTVRYTPNK 303
           KEWKI +E  T +++K LRTDNGL+F   +FN+FC++ GI  HRTVRYTP +
Sbjct: 445 KEWKILVETQTGRKVKKLRTDNGLEFLSNDFNSFCQKEGIATHRTVRYTPQQ 495

[Close]
BLAST of Cmc05g0133591 vs. ExPASy TrEMBL
Match: A0A151TVZ8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_010469 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 2.8e-73
Identity = 135/293 (46.08%), Postives = 183/293 (62.46%), Query Frame = 0 

Query: 11  DWVLDSGCSFHMTPLKGWFTTYKAWDGGLVYMGNDNACKIIGIGSVTLIFKDETTTLLRN 70
           +W+LDSGC+FHM P K  FTT +  D G+V MGND  CKI GIG++ +   D T   L N
Sbjct: 286 EWILDSGCTFHMCPYKDLFTTLEPVDSGVVLMGNDTQCKIAGIGTIQIKTHDGTIKTLSN 345

Query: 71  GRHVPSLKRNLISLGMLNSIGCEYRRSARKFEIIIRNSKIVLVGTKINGLFLIK-EVSMN 130
            R +P LKRNLISLG L S+GC+Y       + + + + ++L   +I  L++++  +   
Sbjct: 346 VRFIPDLKRNLISLGTLESLGCKYSAEGGVLK-VSKGAIVLLKANRIGSLYILQGSIVTG 405

Query: 131 HAALIVSNDKLTEGDLWHKRLSHISRKGLKIFSEHGIIPKEVAEKLSFCEHCVISKSTRQ 190
            AA+  S        LWH RL H+S KG+ + S+ G++  +   KL FCEHCV  K  R 
Sbjct: 406 SAAVSSSMSDKDATKLWHMRLGHMSEKGMHLLSKQGLLGNQGIGKLEFCEHCVFGKQKRV 465

Query: 191 NFQKAEHNTKDILEYIHSDLWGPSQTPSLNNSRYFLTFTDDYSRKSWVYFLKTKDQTLEK 250
           +F  A H TK  L+YIHSDLWGPS+ PS    RY +T  DD+SRK WVYFL+ K++T   
Sbjct: 466 SFSTATHRTKGTLDYIHSDLWGPSKVPSYGGCRYMMTIIDDFSRKVWVYFLRHKNETFPT 525

Query: 251 FKEWKITIEKHTSKQIKCLRTDNGLKFCCEEFNNFCKEHGIKRHRTVRYTPNK 303
           FK+WK  +E  T K++K LRTDNGL+FC  +FN FC  HGI RH+T+   P +
Sbjct: 526 FKKWKTLVETQTGKKVKKLRTDNGLEFCEGDFNEFCANHGIARHKTIPGKPQQ 577

[Close]
BLAST of Cmc05g0133591 vs. ExPASy TrEMBL
Match: A0A151S790 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_027548 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 1.4e-72
Identity = 139/295 (47.12%), Postives = 186/295 (63.05%), Query Frame = 0 

Query: 12  WVLDSGCSFHMTPLKGWFTTYKAWDGGLVYMGNDNACKIIGIGSVTLIFKDETTTLLRNG 71
           WVLDSGCS+HM P + WF TY+   GG V+MGND  CK +GIG++ L   D     L   
Sbjct: 53  WVLDSGCSYHMCPNRSWFLTYEERLGGRVFMGNDMPCKTVGIGTIQLRMHDGVIRTLTEV 112

Query: 72  RHVPSLKRNLISLGMLNSIG--CEYRRSARKFEIIIRNSKIVLVGTKINGLFLIK--EVS 131
           RHVP LK+NLIS+G+L+S G  C  +    +   I R S +V+ G K   L++++    S
Sbjct: 113 RHVPDLKKNLISVGVLDSKGFKCNVKNGVME---IKRGSTVVMRGFKKGNLYMLQGSTSS 172

Query: 132 MNHAALIVSNDKLTEGDLWHKRLSHISRKGLKIFSEHGIIPKEVAEKLSFCEHCVISKST 191
           ++ +  +   +      LWH RL H+S +G+ I S   ++     ++L FCEHCV  K  
Sbjct: 173 ISESVSVAEKNIPDLTYLWHMRLGHMSERGMMILSRQQLLGNHTVKELRFCEHCVFGKQH 232

Query: 192 RQNFQKAEHNTKDILEYIHSDLWGPSQTPSLNNSRYFLTFTDDYSRKSWVYFLKTKDQTL 251
           R  F KA+H+TK  L+YIHSD WGPSQ PSL   RYFL+  DDYSR +W++  K K+Q  
Sbjct: 233 RIKFPKAQHSTKSTLDYIHSDCWGPSQVPSLGGGRYFLSIIDDYSRMTWIFITKHKNQAF 292

Query: 252 EKFKEWKITIEKHTSKQIKCLRTDNGLKFCCEEFNNFCKEHGIKRHRTVRYTPNK 303
           + FKEWKI +EK  SK++K LRTDNGL+FC +EFN+FCK  GI R  TVR TP +
Sbjct: 293 KCFKEWKILMEKQISKRVKRLRTDNGLEFCSKEFNDFCKAEGIARQYTVRNTPQQ 344

[Close]
BLAST of Cmc05g0133591 vs. TAIR 10
Match: ATMG00300.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 83.6 bits (205), Expect = 3.1e-16
Identity = 35/113 (30.97%), Postives = 64/113 (56.64%), Query Frame = 0 

Query: 104 IIRNSKIVLVGTKINGLFLIKEVSMNHAALIVSNDKLTEGDLWHKRLSHISRKGLKIFSE 163
           +++  + +L G + + L+++ + S+      ++     E  LWH RL+H+S++G+++  +
Sbjct: 31  VLKGCRTILKGNRHDSLYIL-QGSVETGESNLAETAKDETRLWHSRLAHMSQRGMELLVK 90

Query: 164 HGIIPKEVAEKLSFCEHCVISKSTRQNFQKAEHNTKDILEYIHSDLWGPSQTP 217
            G +       L FCE C+  K+ R NF   +H TK+ L+Y+HSDLWG    P
Sbjct: 91  KGFLDSSKVSSLKFCEDCIYGKTHRVNFSTGQHTTKNPLDYVHSDLWGAPSVP 142

The following BLAST results are available for this feature:
BLAST of Cmc05g0133591 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0059756.12.0e-10282.68Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
RVW81650.16.6e-7747.99Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
RVW75706.11.9e-7647.60Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera][more]
KAG9441834.13.1e-7449.01hypothetical protein H6P81_017688 [Aristolochia fimbriata][more]
KAG8492609.14.0e-7447.00hypothetical protein CXB51_010030 [Gossypium anomalum][more]
BLAST of Cmc05g0133591 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P109784.2e-5035.52Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Q94HW22.6e-2328.38Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT947.4e-2327.95Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P041462.3e-1628.28Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
P932934.4e-1530.97Uncharacterized mitochondrial protein AtMg00300 OS=Arabidopsis thaliana OX=3702 ... [more]
BLAST of Cmc05g0133591 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UZX29.8e-10382.68Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A438HB173.2e-7747.99Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A0A438GU199.3e-7747.60Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX... [more]
A0A151TVZ82.8e-7346.08Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=... [more]
A0A151S7901.4e-7247.12Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanu... [more]
BLAST of Cmc05g0133591 vs. TAIR 10
Match NameE-valueIdentityDescription
ATMG00300.13.1e-1630.97Gag-Pol-related retrotransposon family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001584Integrase, catalytic corePFAMPF00665rvecoord: 203..300
e-value: 9.8E-11
score: 41.9
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 194..308
score: 12.195373
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 193..303
e-value: 1.1E-20
score: 75.8
IPR025724GAG-pre-integrase domainPFAMPF13976gag_pre-integrscoord: 119..186
e-value: 2.5E-13
score: 49.7
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 140..297
NoneNo IPR availablePANTHERPTHR11439:SF324RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATEDcoord: 140..297
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 201..301

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc05g0133591.1Cmc05g0133591.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding