Cmc05g0133481 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc05g0133481
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr05: 14250877 .. 14251542 (+)
RNA-Seq Expression	Cmc05g0133481
Synteny	Cmc05g0133481

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGGCAGACCAATTTCAAATGAAAGTTTAGGAGAGGCACAGTTTGTTCTGGGCATTCTGATCTTTAGAGATCGTAAGAATATAATGCTAGCTTTGTCTCAAGCATCGTATATTGACAAGATAGTTGTTAAATATTCAATGCAAAACTCCAAGAGAGACTTACTACCTTTCAGGCATGGAGTTACTTTGTCTAAGGAACAGTGTCCTAAGACACCTCAAAAAGTTGAGGAAATGAGATATATCCCCTATGCATCAGTTGTTGGCAGCTTGATGTATGCGATGTTACGTACTACACCTGATATTTGTTATGCGGTAGGGATAGTCAGTAGATATCACTCTAATCCAGGATTAGCTCACTGGACTGCCGTTAAAACTATCCTCAAGTATCTTAGGAGAACAAGGGACTACATGCTTGTGTATAGTTTTAAGGATTTGATTCTTACAGGAGACACAGACTCTGATTTTCAAACTAATAGAGATTCTAGGAAATCTACTTCAGGTTCAGTGTTCACTCTTAACAGAGGAGCAGCAGTTTGGAGAAGTATCAAGCAAGGATGTATTGCTGACTCCAACATGGAGGCAGAGTATGTCGCAGCTTGTGAAGCTACCAAAGAGGCTGTTTGGCTTAGGAAATTATTGACTGATTTGGAAGTAGTTCAGTAA

mRNA sequence

ATGGTTGGCAGACCAATTTCAAATGAAAGTTTAGGAGAGGCACAGTTTGTTCTGGGCATTCTGATCTTTAGAGATCGTAAGAATATAATGCTAGCTTTGTCTCAAGCATCGTATATTGACAAGATAGTTGTTAAATATTCAATGCAAAACTCCAAGAGAGACTTACTACCTTTCAGGCATGGAGTTACTTTGTCTAAGGAACAGTGTCCTAAGACACCTCAAAAAGTTGAGGAAATGAGATATATCCCCTATGCATCAGTTGTTGGCAGCTTGATGTATGCGATGTTACGTACTACACCTGATATTTGTTATGCGGTAGGGATAGTCAGTAGATATCACTCTAATCCAGGATTAGCTCACTGGACTGCCGTTAAAACTATCCTCAAGTATCTTAGGAGAACAAGGGACTACATGCTTGTGTATAGTTTTAAGGATTTGATTCTTACAGGAGACACAGACTCTGATTTTCAAACTAATAGAGATTCTAGGAAATCTACTTCAGGTTCAGTGTTCACTCTTAACAGAGGAGCAGCAGTTTGGAGAAGTATCAAGCAAGGATGTATTGCTGACTCCAACATGGAGGCAGAGTATGTCGCAGCTTGTGAAGCTACCAAAGAGGCTGTTTGGCTTAGGAAATTATTGACTGATTTGGAAGTAGTTCAGTAA

Coding sequence (CDS)

ATGGTTGGCAGACCAATTTCAAATGAAAGTTTAGGAGAGGCACAGTTTGTTCTGGGCATTCTGATCTTTAGAGATCGTAAGAATATAATGCTAGCTTTGTCTCAAGCATCGTATATTGACAAGATAGTTGTTAAATATTCAATGCAAAACTCCAAGAGAGACTTACTACCTTTCAGGCATGGAGTTACTTTGTCTAAGGAACAGTGTCCTAAGACACCTCAAAAAGTTGAGGAAATGAGATATATCCCCTATGCATCAGTTGTTGGCAGCTTGATGTATGCGATGTTACGTACTACACCTGATATTTGTTATGCGGTAGGGATAGTCAGTAGATATCACTCTAATCCAGGATTAGCTCACTGGACTGCCGTTAAAACTATCCTCAAGTATCTTAGGAGAACAAGGGACTACATGCTTGTGTATAGTTTTAAGGATTTGATTCTTACAGGAGACACAGACTCTGATTTTCAAACTAATAGAGATTCTAGGAAATCTACTTCAGGTTCAGTGTTCACTCTTAACAGAGGAGCAGCAGTTTGGAGAAGTATCAAGCAAGGATGTATTGCTGACTCCAACATGGAGGCAGAGTATGTCGCAGCTTGTGAAGCTACCAAAGAGGCTGTTTGGCTTAGGAAATTATTGACTGATTTGGAAGTAGTTCAGTAA

Protein sequence

MVGRPISNESLGEAQFVLGILIFRDRKNIMLALSQASYIDKIVVKYSMQNSKRDLLPFRHGVTLSKEQCPKTPQKVEEMRYIPYASVVGSLMYAMLRTTPDICYAVGIVSRYHSNPGLAHWTAVKTILKYLRRTRDYMLVYSFKDLILTGDTDSDFQTNRDSRKSTSGSVFTLNRGAAVWRSIKQGCIADSNMEAEYVAACEATKEAVWLRKLLTDLEVVQ

Homology

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BLAST of Cmc05g0133481 vs. NCBI nr
Match: TYK22196.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 402.5 bits (1033), Expect = 2.3e-108
Identity = 201/213 (94.37%), Postives = 206/213 (96.71%), Query Frame = 0


Query: 9   ESLGEAQFVLGILIFRDRKNIMLALSQASYIDKIVVKYSMQNSKRDLLPFRHGVTLSKEQ 68
           +  GEAQFVLGILIFRDRKN MLALSQASYIDKIVVKYSMQNSKRDLLPFRHGVTL KEQ
Sbjct: 120 KDFGEAQFVLGILIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRDLLPFRHGVTLYKEQ 179

Query: 69  CPKTPQKVEEMRYIPYASVVGSLMYAMLRTTPDICYAVGIVSRYHSNPGLAHWTAVKTIL 128
           CPKTPQKVE+MRYIPYASVVGSLMYAMLRTTPDICY VGIVSRYHSNPGLAHWTA+KTIL
Sbjct: 180 CPKTPQKVEQMRYIPYASVVGSLMYAMLRTTPDICYVVGIVSRYHSNPGLAHWTALKTIL 239

Query: 129 KYLRRTRDYMLVYSFKDLILTGDTDSDFQTNRDSRKSTSGSVFTLNRGAAVWRSIKQGCI 188
           KYL+RTRDYMLVYSFKDLILTGDTDSDFQTNRDSRKSTSG VFTLNRGAAVWRSIKQGCI
Sbjct: 240 KYLKRTRDYMLVYSFKDLILTGDTDSDFQTNRDSRKSTSGLVFTLNRGAAVWRSIKQGCI 299

Query: 189 ADSNMEAEYVAACEATKEAVWLRKLLTDLEVVQ 222
           ADSNMEAEYVAACEATK+ VWLRKLLTDLEVVQ
Sbjct: 300 ADSNMEAEYVAACEATKDDVWLRKLLTDLEVVQ 332

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BLAST of Cmc05g0133481 vs. NCBI nr
Match: KAA0051463.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 401.4 bits (1030), Expect = 5.2e-108
Identity = 203/213 (95.31%), Postives = 207/213 (97.18%), Query Frame = 0


Query: 9   ESLGEAQFVLGILIFRDRKNIMLALSQASYIDKIVVKYSMQNSKRDLLPFRHGVTLSKEQ 68
           + LGEA FVLGILIFRDRKN MLALSQASYIDKIVVKYSMQNSKRDLLPFRHGVTLSKEQ
Sbjct: 158 KDLGEALFVLGILIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRDLLPFRHGVTLSKEQ 217

Query: 69  CPKTPQKVEEMRYIPYASVVGSLMYAMLRTTPDICYAVGIVSRYHSNPGLAHWTAVKTIL 128
           CPKTPQKVEEMRYIPYASVVGSLMYAMLRTTPDICYAVGIVSRYHSNPGLAHWTAVKTIL
Sbjct: 218 CPKTPQKVEEMRYIPYASVVGSLMYAMLRTTPDICYAVGIVSRYHSNPGLAHWTAVKTIL 277

Query: 129 KYLRRTRDYMLVYSFKDLILTGDTDSDFQTNRDSRKSTSGSVFTLNRGAAVWRSIKQGCI 188
           KYLR+TRDYMLVY+FKDLILTGDTDSDFQTNRDSRKSTSGSVFTLNRGAA+WRSIKQGCI
Sbjct: 278 KYLRKTRDYMLVYNFKDLILTGDTDSDFQTNRDSRKSTSGSVFTLNRGAAIWRSIKQGCI 337

Query: 189 ADSNMEAEYVAACEATKEAVWLRKLLTDLEVVQ 222
           AD  MEAEYVA CEATKEAVWLRKLLTDLEVVQ
Sbjct: 338 AD--MEAEYVAVCEATKEAVWLRKLLTDLEVVQ 368

[Close]

BLAST of Cmc05g0133481 vs. NCBI nr
Match: KAA0054309.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 371.3 bits (952), Expect = 5.7e-99
Identity = 189/212 (89.15%), Postives = 192/212 (90.57%), Query Frame = 0


Query: 9   ESLGEAQFVLGILIFRDRKNIMLALSQASYIDKIVVKYSMQNSKRDLLPFRHGVTLSKEQ 68
           + LGEAQFVLGI IFRDRKN MLALSQASYIDKIVVKYSMQNSKRDLLPFRHGVTLSKEQ
Sbjct: 742 KDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRDLLPFRHGVTLSKEQ 801

Query: 69  CPKTPQKVEEMRYIPYASVVGSLMYAMLRTTPDICYAVGIVSRYHSNPGLAHWTAVKTIL 128
           CPKTPQ VEEMR+IPYAS VGSLMYAML T PDICYAVGIVSRY SNPGLAHWTAVKTIL
Sbjct: 802 CPKTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTIL 861

Query: 129 KYLRRTRDYMLVYSFKDLILTGDTDSDFQTNRDSRKSTSGSVFTLNRGAAVWRSIKQGCI 188
           KYLRRTRDYMLVY  KDLILTG TDSDFQT+RDSRKSTSGSVFTLN GA VWRSIKQGCI
Sbjct: 862 KYLRRTRDYMLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCI 921

Query: 189 ADSNMEAEYVAACEATKEAVWLRKLLTDLEVV 221
           ADS ME EYVAACEA KE VWLR  L DLEVV
Sbjct: 922 ADSTMEVEYVAACEAAKEVVWLRNFLIDLEVV 953

[Close]

BLAST of Cmc05g0133481 vs. NCBI nr
Match: TYJ97618.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 369.4 bits (947), Expect = 2.2e-98
Identity = 189/212 (89.15%), Postives = 192/212 (90.57%), Query Frame = 0


Query: 9    ESLGEAQFVLGILIFRDRKNIMLALSQASYIDKIVVKYSMQNSKRDLLPFRHGVTLSKEQ 68
            + LGEAQFVLGI IFRDRKN MLALSQASYIDKIVVKYSMQNSKR LLPFRHGVTLSKEQ
Sbjct: 829  KDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKEQ 888

Query: 69   CPKTPQKVEEMRYIPYASVVGSLMYAMLRTTPDICYAVGIVSRYHSNPGLAHWTAVKTIL 128
            CPKTPQ VEEMR+IPYAS VGSLMYAML T PDICYAVGIVSRY SNPGLAHWTAVKTIL
Sbjct: 889  CPKTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTIL 948

Query: 129  KYLRRTRDYMLVYSFKDLILTGDTDSDFQTNRDSRKSTSGSVFTLNRGAAVWRSIKQGCI 188
            KYLRRTRDY LVY  KDLILTG TDSDFQT+RDSRKSTSGSVFTLN GA VWRSIKQGCI
Sbjct: 949  KYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCI 1008

Query: 189  ADSNMEAEYVAACEATKEAVWLRKLLTDLEVV 221
            ADS MEAEYVAACEA KEAVWLR  L DLEVV
Sbjct: 1009 ADSTMEAEYVAACEAAKEAVWLRNFLIDLEVV 1040

[Close]

BLAST of Cmc05g0133481 vs. NCBI nr
Match: KAA0048404.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 369.4 bits (947), Expect = 2.2e-98
Identity = 189/212 (89.15%), Postives = 192/212 (90.57%), Query Frame = 0


Query: 9    ESLGEAQFVLGILIFRDRKNIMLALSQASYIDKIVVKYSMQNSKRDLLPFRHGVTLSKEQ 68
            + LGEAQFVLGI IFRDRKN MLALSQASYIDKIVVKYSMQNSKR LLPFRHGVTLSKEQ
Sbjct: 1043 KDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKEQ 1102

Query: 69   CPKTPQKVEEMRYIPYASVVGSLMYAMLRTTPDICYAVGIVSRYHSNPGLAHWTAVKTIL 128
            CPKTPQ VEEMR+IPYAS VGSLMYAML T PDICYAVGIVSRY SNPGLAHWTAVKTIL
Sbjct: 1103 CPKTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTIL 1162

Query: 129  KYLRRTRDYMLVYSFKDLILTGDTDSDFQTNRDSRKSTSGSVFTLNRGAAVWRSIKQGCI 188
            KYLRRTRDY LVY  KDLILTG TDSDFQT+RDSRKSTSGSVFTLN GA VWRSIKQGCI
Sbjct: 1163 KYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCI 1222

Query: 189  ADSNMEAEYVAACEATKEAVWLRKLLTDLEVV 221
            ADS MEAEYVAACEA KEAVWLR  L DLEVV
Sbjct: 1223 ADSTMEAEYVAACEAAKEAVWLRNFLIDLEVV 1254

[Close]

BLAST of Cmc05g0133481 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 3.4e-46
Identity = 98/213 (46.01%), Postives = 139/213 (65.26%), Query Frame = 0


Query: 9    ESLGEAQFVLGILIFRDRKNIMLALSQASYIDKIVVKYSMQNSKRDLLPFRHGVTLSKEQ 68
            + LG AQ +LG+ I R+R +  L LSQ  YI++++ +++M+N+K    P    + LSK+ 
Sbjct: 1036 KDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHLKLSKKM 1095

Query: 69   CPKTPQKVEEMRYIPYASVVGSLMYAMLRTTPDICYAVGIVSRYHSNPGLAHWTAVKTIL 128
            CP T ++   M  +PY+S VGSLMYAM+ T PDI +AVG+VSR+  NPG  HW AVK IL
Sbjct: 1096 CPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWIL 1155

Query: 129  KYLRRTRDYMLVYSFKDLILTGDTDSDFQTNRDSRKSTSGSVFTLNRGAAVWRSIKQGCI 188
            +YLR T    L +   D IL G TD+D   + D+RKS++G +FT + GA  W+S  Q C+
Sbjct: 1156 RYLRGTTGDCLCFGGSDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCV 1215

Query: 189  ADSNMEAEYVAACEATKEAVWLRKLLTDLEVVQ 222
            A S  EAEY+AA E  KE +WL++ L +L + Q
Sbjct: 1216 ALSTTEAEYIAATETGKEMIWLKRFLQELGLHQ 1248

[Close]

BLAST of Cmc05g0133481 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 2.0e-25
Identity = 61/133 (45.86%), Postives = 90/133 (67.67%), Query Frame = 0


Query: 79  MRYIPYASVVGSLMYAMLRTTPDICYAVGIVSRYHSNPGLAHWTAVKTILKYLRRTRDYM 138
           M+ +PY S VG++MY M+ T PD+  AVG++S++ S+P   HW A+K +L+YL+ T+ Y 
Sbjct: 1   MKNVPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYG 60

Query: 139 LVYSFKDLI-LTGDTDSDFQTNRDSRKSTSGSVFTLNRGAAVWRSIKQGCIADSNMEAEY 198
           L ++      L G +D+D+  + +SR+STSG +F LN G   WRS KQ  +A S+ E EY
Sbjct: 61  LEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEY 120

Query: 199 VAACEATKEAVWL 211
           +A  EAT+EAVWL
Sbjct: 121 MALSEATQEAVWL 133

[Close]

BLAST of Cmc05g0133481 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 108.6 bits (270), Expect = 9.1e-23
Identity = 74/218 (33.94%), Postives = 118/218 (54.13%), Query Frame = 0


Query: 11   LGEAQFVLGILIFRDRKNIMLALSQASYIDKIVVKYSMQNSKRDLLP----FRHGVTLSK 70
            L E +  +GI I  + +   + LSQ++Y+ KI+ K++M+N      P      + +  S 
Sbjct: 1117 LNEIKHFIGIRI--EMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYELLNSD 1176

Query: 71   EQCPKTPQKVEEMRYIPYASVVGSLMYAMLRTTPDICYAVGIVSRYHSNPGLAHWTAVKT 130
            E C             P  S++G LMY ML T PD+  AV I+SRY S      W  +K 
Sbjct: 1177 EDC-----------NTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKR 1236

Query: 131  ILKYLRRTRDYMLVY----SFKDLILTGDTDSDFQTNRDSRKSTSGSVFTL-NRGAAVWR 190
            +L+YL+ T D  L++    +F++ I+ G  DSD+  +   RKST+G +F + +     W 
Sbjct: 1237 VLRYLKGTIDMKLIFKKNLAFENKII-GYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWN 1296

Query: 191  SIKQGCIADSNMEAEYVAACEATKEAVWLRKLLTDLEV 220
            + +Q  +A S+ EAEY+A  EA +EA+WL+ LLT + +
Sbjct: 1297 TKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINI 1320

[Close]

BLAST of Cmc05g0133481 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 71.6 bits (174), Expect = 1.2e-11
Identity = 61/202 (30.20%), Postives = 84/202 (41.58%), Query Frame = 0


Query: 7   SNESLGEAQFVLGILIFRDRKNIMLALSQASYIDKIVVKYSMQNSKRDLLPFRHGVTLSK 66
           S + LG+    LG+ I +   N  + LS   YI K   +  +   K    P  +   L +
Sbjct: 113 SMKDLGKVDKFLGLNIHQS-SNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFE 172

Query: 67  EQCPKTPQKVEEMRYIPYASVVGSLMYAMLRTTPDICYAVGIVSRYHSNPGLAHWTAVKT 126
              P            PY S+VG L++      PDI Y V ++SR+   P   H  + + 
Sbjct: 173 TTSPHLKD------ITPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARR 232

Query: 127 ILKYLRRTRDYMLVY-SFKDLILTGDTDSDFQTNRDSRKSTSGSVFTLNRGAAVWRSIK- 186
           +L+YL  TR   L Y S   L LT   D+      D   ST G V  L      W S K 
Sbjct: 233 VLRYLYTTRSMCLKYRSGSQLALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKL 292

Query: 187 QGCIADSNMEAEYVAACEATKE 207
           +G I   + EAEY+ A E   E
Sbjct: 293 KGVIPVPSTEAEYITASETVME 307

[Close]

BLAST of Cmc05g0133481 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.0e-10
Identity = 59/206 (28.64%), Postives = 93/206 (45.15%), Query Frame = 0


Query: 7   SNESLGEAQFVLGILIFRDRKNIMLALSQASYIDKIVVKYSMQNSK--RDLLPFRHGVTL 66
           S + LG   + LGI I        L LSQ  Y ++I+    M + K     LP +   ++
Sbjct: 32  SMKDLGPVHYFLGIQIKTHPSG--LFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLNSSV 91

Query: 67  SKEQCPKTPQKVEEMRYIPYASVVGSLMYAMLRTTPDICYAVGIVSRYHSNPGLAHWTAV 126
           S  + P             + S+VG+L Y  L T PDI YAV IV +    P LA +  +
Sbjct: 92  STAKYPDPSD---------FRSIVGALQYLTL-TRPDISYAVNIVCQRMHEPTLADFDLL 151

Query: 127 KTILKYLRRTRDY-MLVYSFKDLILTGDTDSDFQTNRDSRKSTSGSVFTLNRGAAVWRSI 186
           K +L+Y++ T  + + ++    L +    DSD+     +R+ST+G    L      W + 
Sbjct: 152 KRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAK 211

Query: 187 KQGCIADSNMEAEYVAACEATKEAVW 210
           +Q  ++ S+ E EY A      E  W
Sbjct: 212 RQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc05g0133481 vs. ExPASy TrEMBL
Match: A0A5D3DF27 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G00730 PE=4 SV=1)

HSP 1 Score: 402.5 bits (1033), Expect = 1.1e-108
Identity = 201/213 (94.37%), Postives = 206/213 (96.71%), Query Frame = 0


Query: 9   ESLGEAQFVLGILIFRDRKNIMLALSQASYIDKIVVKYSMQNSKRDLLPFRHGVTLSKEQ 68
           +  GEAQFVLGILIFRDRKN MLALSQASYIDKIVVKYSMQNSKRDLLPFRHGVTL KEQ
Sbjct: 120 KDFGEAQFVLGILIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRDLLPFRHGVTLYKEQ 179

Query: 69  CPKTPQKVEEMRYIPYASVVGSLMYAMLRTTPDICYAVGIVSRYHSNPGLAHWTAVKTIL 128
           CPKTPQKVE+MRYIPYASVVGSLMYAMLRTTPDICY VGIVSRYHSNPGLAHWTA+KTIL
Sbjct: 180 CPKTPQKVEQMRYIPYASVVGSLMYAMLRTTPDICYVVGIVSRYHSNPGLAHWTALKTIL 239

Query: 129 KYLRRTRDYMLVYSFKDLILTGDTDSDFQTNRDSRKSTSGSVFTLNRGAAVWRSIKQGCI 188
           KYL+RTRDYMLVYSFKDLILTGDTDSDFQTNRDSRKSTSG VFTLNRGAAVWRSIKQGCI
Sbjct: 240 KYLKRTRDYMLVYSFKDLILTGDTDSDFQTNRDSRKSTSGLVFTLNRGAAVWRSIKQGCI 299

Query: 189 ADSNMEAEYVAACEATKEAVWLRKLLTDLEVVQ 222
           ADSNMEAEYVAACEATK+ VWLRKLLTDLEVVQ
Sbjct: 300 ADSNMEAEYVAACEATKDDVWLRKLLTDLEVVQ 332

[Close]

BLAST of Cmc05g0133481 vs. ExPASy TrEMBL
Match: A0A5A7U6E2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G002240 PE=4 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 2.5e-108
Identity = 203/213 (95.31%), Postives = 207/213 (97.18%), Query Frame = 0


Query: 9   ESLGEAQFVLGILIFRDRKNIMLALSQASYIDKIVVKYSMQNSKRDLLPFRHGVTLSKEQ 68
           + LGEA FVLGILIFRDRKN MLALSQASYIDKIVVKYSMQNSKRDLLPFRHGVTLSKEQ
Sbjct: 158 KDLGEALFVLGILIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRDLLPFRHGVTLSKEQ 217

Query: 69  CPKTPQKVEEMRYIPYASVVGSLMYAMLRTTPDICYAVGIVSRYHSNPGLAHWTAVKTIL 128
           CPKTPQKVEEMRYIPYASVVGSLMYAMLRTTPDICYAVGIVSRYHSNPGLAHWTAVKTIL
Sbjct: 218 CPKTPQKVEEMRYIPYASVVGSLMYAMLRTTPDICYAVGIVSRYHSNPGLAHWTAVKTIL 277

Query: 129 KYLRRTRDYMLVYSFKDLILTGDTDSDFQTNRDSRKSTSGSVFTLNRGAAVWRSIKQGCI 188
           KYLR+TRDYMLVY+FKDLILTGDTDSDFQTNRDSRKSTSGSVFTLNRGAA+WRSIKQGCI
Sbjct: 278 KYLRKTRDYMLVYNFKDLILTGDTDSDFQTNRDSRKSTSGSVFTLNRGAAIWRSIKQGCI 337

Query: 189 ADSNMEAEYVAACEATKEAVWLRKLLTDLEVVQ 222
           AD  MEAEYVA CEATKEAVWLRKLLTDLEVVQ
Sbjct: 338 AD--MEAEYVAVCEATKEAVWLRKLLTDLEVVQ 368

[Close]

BLAST of Cmc05g0133481 vs. ExPASy TrEMBL
Match: A0A5A7ULH1 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G00280 PE=4 SV=1)

HSP 1 Score: 371.3 bits (952), Expect = 2.8e-99
Identity = 189/212 (89.15%), Postives = 192/212 (90.57%), Query Frame = 0


Query: 9   ESLGEAQFVLGILIFRDRKNIMLALSQASYIDKIVVKYSMQNSKRDLLPFRHGVTLSKEQ 68
           + LGEAQFVLGI IFRDRKN MLALSQASYIDKIVVKYSMQNSKRDLLPFRHGVTLSKEQ
Sbjct: 742 KDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRDLLPFRHGVTLSKEQ 801

Query: 69  CPKTPQKVEEMRYIPYASVVGSLMYAMLRTTPDICYAVGIVSRYHSNPGLAHWTAVKTIL 128
           CPKTPQ VEEMR+IPYAS VGSLMYAML T PDICYAVGIVSRY SNPGLAHWTAVKTIL
Sbjct: 802 CPKTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTIL 861

Query: 129 KYLRRTRDYMLVYSFKDLILTGDTDSDFQTNRDSRKSTSGSVFTLNRGAAVWRSIKQGCI 188
           KYLRRTRDYMLVY  KDLILTG TDSDFQT+RDSRKSTSGSVFTLN GA VWRSIKQGCI
Sbjct: 862 KYLRRTRDYMLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCI 921

Query: 189 ADSNMEAEYVAACEATKEAVWLRKLLTDLEVV 221
           ADS ME EYVAACEA KE VWLR  L DLEVV
Sbjct: 922 ADSTMEVEYVAACEAAKEVVWLRNFLIDLEVV 953

[Close]

BLAST of Cmc05g0133481 vs. ExPASy TrEMBL
Match: A0A5A7SMH8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G002560 PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 1.1e-98
Identity = 189/212 (89.15%), Postives = 192/212 (90.57%), Query Frame = 0


Query: 9    ESLGEAQFVLGILIFRDRKNIMLALSQASYIDKIVVKYSMQNSKRDLLPFRHGVTLSKEQ 68
            + LGEAQFVLGI IFRDRKN MLALSQASYIDKIVVKYSMQNSKR LLPFRHGVTLSKEQ
Sbjct: 1044 KDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKEQ 1103

Query: 69   CPKTPQKVEEMRYIPYASVVGSLMYAMLRTTPDICYAVGIVSRYHSNPGLAHWTAVKTIL 128
            CPKTPQ VEEMR+IPYAS VGSLMYAML T PDICYAVGIVSRY SNPGLAHWTAVKTIL
Sbjct: 1104 CPKTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTIL 1163

Query: 129  KYLRRTRDYMLVYSFKDLILTGDTDSDFQTNRDSRKSTSGSVFTLNRGAAVWRSIKQGCI 188
            KYLRRTRDY LVY  KDLILTG TDSDFQT+RDSRKSTSGSVFTLN GA VWRSIKQGCI
Sbjct: 1164 KYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCI 1223

Query: 189  ADSNMEAEYVAACEATKEAVWLRKLLTDLEVV 221
            ADS MEAEYVAACEA KEAVWLR  L DLEVV
Sbjct: 1224 ADSTMEAEYVAACEAAKEAVWLRNFLIDLEVV 1255

[Close]

BLAST of Cmc05g0133481 vs. ExPASy TrEMBL
Match: A0A5D3CPJ6 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G00040 PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 1.1e-98
Identity = 189/212 (89.15%), Postives = 192/212 (90.57%), Query Frame = 0


Query: 9    ESLGEAQFVLGILIFRDRKNIMLALSQASYIDKIVVKYSMQNSKRDLLPFRHGVTLSKEQ 68
            + LGEAQFVLGI IFRDRKN MLALSQASYIDKIVVKYSMQNSKR LLPFRHGVTLSKEQ
Sbjct: 1044 KDLGEAQFVLGIQIFRDRKNKMLALSQASYIDKIVVKYSMQNSKRGLLPFRHGVTLSKEQ 1103

Query: 69   CPKTPQKVEEMRYIPYASVVGSLMYAMLRTTPDICYAVGIVSRYHSNPGLAHWTAVKTIL 128
            CPKTPQ VEEMR+IPYAS VGSLMYAML T PDICYAVGIVSRY SNPGLAHWTAVKTIL
Sbjct: 1104 CPKTPQDVEEMRHIPYASAVGSLMYAMLCTRPDICYAVGIVSRYQSNPGLAHWTAVKTIL 1163

Query: 129  KYLRRTRDYMLVYSFKDLILTGDTDSDFQTNRDSRKSTSGSVFTLNRGAAVWRSIKQGCI 188
            KYLRRTRDY LVY  KDLILTG TDSDFQT+RDSRKSTSGSVFTLN GA VWRSIKQGCI
Sbjct: 1164 KYLRRTRDYTLVYGSKDLILTGYTDSDFQTDRDSRKSTSGSVFTLNGGAVVWRSIKQGCI 1223

Query: 189  ADSNMEAEYVAACEATKEAVWLRKLLTDLEVV 221
            ADS MEAEYVAACEA KEAVWLR  L DLEVV
Sbjct: 1224 ADSTMEAEYVAACEAAKEAVWLRNFLIDLEVV 1255

[Close]

BLAST of Cmc05g0133481 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 82.8 bits (203), Expect = 3.8e-16
Identity = 64/210 (30.48%), Postives = 103/210 (49.05%), Query Frame = 0


Query: 11  LGEAQFVLGILIFRDRKNIMLALSQASYIDKIVVKYSMQNSKRDLLPFRHGVTLSKEQCP 70
           LG  ++ LG+ I R    I +   Q  Y   ++ +  +   K   +P    VT S     
Sbjct: 313 LGPLKYFLGLEIARSAAGINIC--QRKYALDLLDETGLLGCKPSSVPMDPSVTFSAH--- 372

Query: 71  KTPQKVEEMRYIPYASVVGSLMYAMLRTTPDICYAVGIVSRYHSNPGLAHWTAVKTILKY 130
                 + +    Y  ++G LMY  + T  DI +AV  +S++   P LAH  AV  IL Y
Sbjct: 373 ---SGGDFVDAKAYRRLIGRLMYLQI-TRLDISFAVNKLSQFSEAPRLAHQQAVMKILHY 432

Query: 131 LRRTRDYMLVYSFK-DLILTGDTDSDFQTNRDSRKSTSGSVFTLNRGAAVWRSIKQGCIA 190
           ++ T    L YS + ++ L   +D+ FQ+ +D+R+ST+G    L      W+S KQ  ++
Sbjct: 433 IKGTVGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVS 492

Query: 191 DSNMEAEYVAACEATKEAVWLRKLLTDLEV 220
            S+ EAEY A   AT E +WL +   +L++
Sbjct: 493 KSSAEAEYRALSFATDEMMWLAQFFRELQL 513

[Close]

BLAST of Cmc05g0133481 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 68.6 bits (166), Expect = 7.4e-12
Identity = 59/206 (28.64%), Postives = 93/206 (45.15%), Query Frame = 0


Query: 7   SNESLGEAQFVLGILIFRDRKNIMLALSQASYIDKIVVKYSMQNSK--RDLLPFRHGVTL 66
           S + LG   + LGI I        L LSQ  Y ++I+    M + K     LP +   ++
Sbjct: 32  SMKDLGPVHYFLGIQIKTHPSG--LFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLNSSV 91

Query: 67  SKEQCPKTPQKVEEMRYIPYASVVGSLMYAMLRTTPDICYAVGIVSRYHSNPGLAHWTAV 126
           S  + P             + S+VG+L Y  L T PDI YAV IV +    P LA +  +
Sbjct: 92  STAKYPDPSD---------FRSIVGALQYLTL-TRPDISYAVNIVCQRMHEPTLADFDLL 151

Query: 127 KTILKYLRRTRDY-MLVYSFKDLILTGDTDSDFQTNRDSRKSTSGSVFTLNRGAAVWRSI 186
           K +L+Y++ T  + + ++    L +    DSD+     +R+ST+G    L      W + 
Sbjct: 152 KRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAK 211

Query: 187 KQGCIADSNMEAEYVAACEATKEAVW 210
           +Q  ++ S+ E EY A      E  W
Sbjct: 212 RQPTVSRSSTETEYRALALTAAELTW 225

The following BLAST results are available for this feature:

BLAST of Cmc05g0133481 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK22196.1	2.3e-108	94.37	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0051463.1	5.2e-108	95.31	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054309.1	5.7e-99	89.15	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYJ97618.1	2.2e-98	89.15	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0048404.1	2.2e-98	89.15	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc05g0133481 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	3.4e-46	46.01	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P0CV72	2.0e-25	45.86	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
P04146	9.1e-23	33.94	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P25600	1.2e-11	30.20	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]
P92519	1.0e-10	28.64	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc05g0133481 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DF27	1.1e-108	94.37	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold333G0073...	[more]
A0A5A7U6E2	2.5e-108	95.31	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00224...	[more]
A0A5A7ULH1	2.8e-99	89.15	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G00280...	[more]
A0A5A7SMH8	1.1e-98	89.15	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold219G0025...	[more]
A0A5D3CPJ6	1.1e-98	89.15	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G0004...	[more]

BLAST of Cmc05g0133481 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	3.8e-16	30.48	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	7.4e-12	28.64	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 62..170
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 62..170
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 152..221 e-value: 1.8545E-29 score: 105.243

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc05g0133481.1	Cmc05g0133481.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding