Cmc05g0132541 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc05g0132541
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr05: 12692550 .. 12693137 (-)
RNA-Seq Expression	Cmc05g0132541
Synteny	Cmc05g0132541

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTCTCGTTTGTCCTCCTTCCACATCTCCTTCTCTAGTCCTCAACCTTTCTTCACTGACACATCTATTGACTTTTTTCCTCCCTCTGAGTCTCCTCTTGGTAATGAGCTTGCTCAATCTGCACCTACTTCGGCAATCTCGGACCAATCGTCCATCTCTGATGACAGTCCTGAACCTACTCCAGACACCCCTCCTCGTCGTTCTACTAGGGTAAGGGAACCTCTTATTCATCTCCAAGATTATCACTGTTTTTTCACTATTATTTCTCTTGTTGAACCTACCTCTTATCAAGAGGCTAGTACTGACCCTTTATGGCAGAAAGCGATGAATGATGAATTACAGGCTCTTGAAAAGACGCATATTTGGGACTATGTTGACTTACCTCCTGGTAAAAGACTCATTGGTTGTAAATGGATCTACAAAATCAAGACTCATTCTGATGGTACTATTGAGCGATATAAGGCTCGTCTTGTAGCAAAAGGGTATTCCCAAGAATATGGTATTGACTATGAAGAAACATTTGCTCCTGTGGCTCGAATGACGTCTGTTAGCAGTTTATTAGCTGTTGTTGCTGCCAAGCAGTGA

mRNA sequence

ATGTTCTCTCGTTTGTCCTCCTTCCACATCTCCTTCTCTAGTCCTCAACCTTTCTTCACTGACACATCTATTGACTTTTTTCCTCCCTCTGAGTCTCCTCTTGGTAATGAGCTTGCTCAATCTGCACCTACTTCGGCAATCTCGGACCAATCGTCCATCTCTGATGACAGTCCTGAACCTACTCCAGACACCCCTCCTCGTCGTTCTACTAGGGTAAGGGAACCTCTTATTCATCTCCAAGATTATCACTGTTTTTTCACTATTATTTCTCTTGTTGAACCTACCTCTTATCAAGAGGCTAGTACTGACCCTTTATGGCAGAAAGCGATGAATGATGAATTACAGGCTCTTGAAAAGACGCATATTTGGGACTATGTTGACTTACCTCCTGGTAAAAGACTCATTGGTTGTAAATGGATCTACAAAATCAAGACTCATTCTGATGGTACTATTGAGCGATATAAGGCTCGTCTTGTAGCAAAAGGGTATTCCCAAGAATATGGTATTGACTATGAAGAAACATTTGCTCCTGTGGCTCGAATGACGTCTGTTAGCAGTTTATTAGCTGTTGTTGCTGCCAAGCAGTGA

Coding sequence (CDS)

ATGTTCTCTCGTTTGTCCTCCTTCCACATCTCCTTCTCTAGTCCTCAACCTTTCTTCACTGACACATCTATTGACTTTTTTCCTCCCTCTGAGTCTCCTCTTGGTAATGAGCTTGCTCAATCTGCACCTACTTCGGCAATCTCGGACCAATCGTCCATCTCTGATGACAGTCCTGAACCTACTCCAGACACCCCTCCTCGTCGTTCTACTAGGGTAAGGGAACCTCTTATTCATCTCCAAGATTATCACTGTTTTTTCACTATTATTTCTCTTGTTGAACCTACCTCTTATCAAGAGGCTAGTACTGACCCTTTATGGCAGAAAGCGATGAATGATGAATTACAGGCTCTTGAAAAGACGCATATTTGGGACTATGTTGACTTACCTCCTGGTAAAAGACTCATTGGTTGTAAATGGATCTACAAAATCAAGACTCATTCTGATGGTACTATTGAGCGATATAAGGCTCGTCTTGTAGCAAAAGGGTATTCCCAAGAATATGGTATTGACTATGAAGAAACATTTGCTCCTGTGGCTCGAATGACGTCTGTTAGCAGTTTATTAGCTGTTGTTGCTGCCAAGCAGTGA

Protein sequence

MFSRLSSFHISFSSPQPFFTDTSIDFFPPSESPLGNELAQSAPTSAISDQSSISDDSPEPTPDTPPRRSTRVREPLIHLQDYHCFFTIISLVEPTSYQEASTDPLWQKAMNDELQALEKTHIWDYVDLPPGKRLIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVSSLLAVVAAKQ

Homology

[Close]

BLAST of Cmc05g0132541 vs. NCBI nr
Match: TYJ98155.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 369.0 bits (946), Expect = 2.5e-98
Identity = 185/195 (94.87%), Postives = 185/195 (94.87%), Query Frame = 0


Query: 1   MFSRLSSFHISFSSPQPFFTDTSIDFFPPSESPLGNELAQSAPTSAISDQSSISDDSPEP 60
           MFSRLSSFH SFSSPQPFFTDTSID FPPSESPLGNELAQSAPTSAISDQSSI DDSPEP
Sbjct: 575 MFSRLSSFHTSFSSPQPFFTDTSIDLFPPSESPLGNELAQSAPTSAISDQSSIPDDSPEP 634

Query: 61  TPDTPPRRSTRVREPLIHLQDYHCFFTIISLVEPTSYQEASTDPLWQKAMNDELQALEKT 120
           TPDTPP RSTRVREP IHLQDYHCF TIISLVEPTSYQEASTDPLWQKAMNDELQALEKT
Sbjct: 635 TPDTPPSRSTRVREPPIHLQDYHCFSTIISLVEPTSYQEASTDPLWQKAMNDELQALEKT 694

Query: 121 HIWDYVDLPPGKRLIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVAR 180
           H WDYVDLPPGKR IGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVAR
Sbjct: 695 HTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVAR 754

Query: 181 MTSVSSLLAVVAAKQ 196
           MTSV SLLAV AAKQ
Sbjct: 755 MTSVRSLLAVAAAKQ 769

[Close]

BLAST of Cmc05g0132541 vs. NCBI nr
Match: KAA0050251.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 367.5 bits (942), Expect = 7.3e-98
Identity = 185/195 (94.87%), Postives = 185/195 (94.87%), Query Frame = 0


Query: 1   MFSRLSSFHISFSSPQPFFTDTSIDFFPPSESPLGNELAQSAPTSAISDQSSISDDSPEP 60
           MFSRLSSFH SFSSPQPFFTDTSID FPPSESPLGNELAQSAPTSAISDQSSI DDSPEP
Sbjct: 575 MFSRLSSFHTSFSSPQPFFTDTSIDLFPPSESPLGNELAQSAPTSAISDQSSIPDDSPEP 634

Query: 61  TPDTPPRRSTRVREPLIHLQDYHCFFTIISLVEPTSYQEASTDPLWQKAMNDELQALEKT 120
           TPDTPPRRSTRVREP IHLQDYHCF TIISLVE TSYQEASTDPLWQKAMNDELQALEKT
Sbjct: 635 TPDTPPRRSTRVREPPIHLQDYHCFSTIISLVELTSYQEASTDPLWQKAMNDELQALEKT 694

Query: 121 HIWDYVDLPPGKRLIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVAR 180
           H WDYVDLPPGKR IGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVAR
Sbjct: 695 HTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVAR 754

Query: 181 MTSVSSLLAVVAAKQ 196
           MTSV SLLAV AAKQ
Sbjct: 755 MTSVRSLLAVAAAKQ 769

[Close]

BLAST of Cmc05g0132541 vs. NCBI nr
Match: KAA0064888.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 357.8 bits (917), Expect = 5.8e-95
Identity = 179/195 (91.79%), Postives = 183/195 (93.85%), Query Frame = 0


Query: 1   MFSRLSSFHISFSSPQPFFTDTSIDFFPPSESPLGNELAQSAPTSAISDQSSISDDSPEP 60
           MFSRLSSFH SFSSPQPFFTDTSID FPPSESP+GNELAQSAPTSA S+QSSIS  SPEP
Sbjct: 175 MFSRLSSFHTSFSSPQPFFTDTSIDLFPPSESPIGNELAQSAPTSATSNQSSISGGSPEP 234

Query: 61  TPDTPPRRSTRVREPLIHLQDYHCFFTIISLVEPTSYQEASTDPLWQKAMNDELQALEKT 120
           TPDTPPRRSTRVREP IHLQDYHCF TIISLVEPTSYQEAS +P+WQKAMNDELQALEKT
Sbjct: 235 TPDTPPRRSTRVREPPIHLQDYHCFSTIISLVEPTSYQEASINPVWQKAMNDELQALEKT 294

Query: 121 HIWDYVDLPPGKRLIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVAR 180
           H WDYVDLPPGKR IGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVAR
Sbjct: 295 HTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVAR 354

Query: 181 MTSVSSLLAVVAAKQ 196
           MTSV SLLAV AAKQ
Sbjct: 355 MTSVRSLLAVAAAKQ 369

[Close]

BLAST of Cmc05g0132541 vs. NCBI nr
Match: KAA0052263.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK01827.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 356.3 bits (913), Expect = 1.7e-94
Identity = 179/195 (91.79%), Postives = 180/195 (92.31%), Query Frame = 0


Query: 1   MFSRLSSFHISFSSPQPFFTDTSIDFFPPSESPLGNELAQSAPTSAISDQSSISDDSPEP 60
           MFSRLSSFH SFSSPQPFFT+TSID FPPSESPLGNELAQSAPTS I DQSSISD  PEP
Sbjct: 429 MFSRLSSFHTSFSSPQPFFTNTSIDLFPPSESPLGNELAQSAPTSTILDQSSISDGRPEP 488

Query: 61  TPDTPPRRSTRVREPLIHLQDYHCFFTIISLVEPTSYQEASTDPLWQKAMNDELQALEKT 120
           T DTPPRRST VREP IHLQDYHCF TIISLVEPTSYQEASTDPLWQKAMNDELQALEKT
Sbjct: 489 TSDTPPRRSTWVREPPIHLQDYHCFSTIISLVEPTSYQEASTDPLWQKAMNDELQALEKT 548

Query: 121 HIWDYVDLPPGKRLIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVAR 180
           H WDYVDLPPGKRLIGCKWIYKIKTHSDGTIERYK RLVAKGYSQEYGIDYEETFAPVAR
Sbjct: 549 HTWDYVDLPPGKRLIGCKWIYKIKTHSDGTIERYKTRLVAKGYSQEYGIDYEETFAPVAR 608

Query: 181 MTSVSSLLAVVAAKQ 196
           MTSV SLL V AAKQ
Sbjct: 609 MTSVRSLLVVAAAKQ 623

[Close]

BLAST of Cmc05g0132541 vs. NCBI nr
Match: KAA0068117.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 356.3 bits (913), Expect = 1.7e-94
Identity = 181/195 (92.82%), Postives = 182/195 (93.33%), Query Frame = 0


Query: 1   MFSRLSSFHISFSSPQPFFTDTSIDFFPPSESPLGNELAQSAPTSAISDQSSISDDSPEP 60
           MFSRLSSFH SFSSPQPFFTDTSID FPPSESPL NELAQSAPTSAISDQSSISD SPEP
Sbjct: 564 MFSRLSSFHTSFSSPQPFFTDTSIDLFPPSESPLRNELAQSAPTSAISDQSSISDGSPEP 623

Query: 61  TPDTPPRRSTRVREPLIHLQDYHCFFTIISLVEPTSYQEASTDPLWQKAMNDELQALEKT 120
           TPDTP RRST VREP IHLQDYHCF TIISLVEPTSYQEASTDPLWQKAMNDELQALEKT
Sbjct: 624 TPDTPHRRSTGVREPPIHLQDYHCFSTIISLVEPTSYQEASTDPLWQKAMNDELQALEKT 683

Query: 121 HIWDYVDLPPGKRLIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVAR 180
           H WDYVDLPPGKR IGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFA VAR
Sbjct: 684 HTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFALVAR 743

Query: 181 MTSVSSLLAVVAAKQ 196
           MTS+ SLLAV AAKQ
Sbjct: 744 MTSLRSLLAVAAAKQ 758

[Close]

BLAST of Cmc05g0132541 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 5.7e-21
Identity = 47/98 (47.96%), Postives = 65/98 (66.33%), Query Frame = 0


Query: 93  EPTSYQEASTDPLWQKAMNDELQALEKTHIWDYVDLPPGKRLIGCKWIYKIKTHSDGTIE 152
           EP S   A  DP W +AM +EL AL +   W  V  P  + ++GCKW++K K HSDGT++
Sbjct: 27  EPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLD 86

Query: 153 RYKARLVAKGYSQEYGIDYEETFAPVARMTSVSSLLAV 191
           R KARLVAKG+ QE GI + ET++PV R  ++ ++L V
Sbjct: 87  RLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNV 124

[Close]

BLAST of Cmc05g0132541 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 9.8e-21
Identity = 71/193 (36.79%), Postives = 97/193 (50.26%), Query Frame = 0


Query: 28   PPSESPLGNELAQSAPTSAISDQS------SISDDSPEPTPDT------PP--------- 87
            P +ESP  ++LAQS  T A S  S      S S  S  PTP +      PP         
Sbjct: 863  PTNESP--SQLAQSLSTPAQSSSSSPSPTTSASSSSTSPTPPSILIHPPPPLAQIVNNNN 922

Query: 88   -------RRSTRVREPLIHLQ-DYHCFFTIISLVEPTSYQEASTDPLWQKAMNDELQALE 147
                      TR +  +I     Y    ++ +  EP +  +A  D  W+ AM  E+ A  
Sbjct: 923  QAPLNTHSMGTRAKAGIIKPNPKYSLAVSLAAESEPRTAIQALKDERWRNAMGSEINAQI 982

Query: 148  KTHIWDYVDLPPGK-RLIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAP 191
              H WD V  PP    ++GC+WI+  K +SDG++ RYKARLVAKGY+Q  G+DY ETF+P
Sbjct: 983  GNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSP 1042

[Close]

BLAST of Cmc05g0132541 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.9e-20
Identity = 67/191 (35.08%), Postives = 95/191 (49.74%), Query Frame = 0


Query: 28   PPSESPLGNELAQS----APTSAISDQSSISDDSPEPTPDTPP----------------- 87
            P   SPL      S     P+++IS+ +S S  S   TP  PP                 
Sbjct: 850  PNQNSPLPQSPISSPHIPTPSTSISEPNSPSSSSTS-TPPLPPVLPAPPIIQVNAQAPVN 909

Query: 88   ------RRSTRVREPLIHLQDYHCFFTIISLVEPTSYQEASTDPLWQKAMNDELQALEKT 147
                  R    +R+P    Q Y    ++ +  EP +  +A  D  W++AM  E+ A    
Sbjct: 910  THSMATRAKDGIRKP---NQKYSYATSLAANSEPRTAIQAMKDDRWRQAMGSEINAQIGN 969

Query: 148  HIWDYV-DLPPGKRLIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVA 191
            H WD V   PP   ++GC+WI+  K +SDG++ RYKARLVAKGY+Q  G+DY ETF+PV 
Sbjct: 970  HTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVI 1029

[Close]

BLAST of Cmc05g0132541 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.4e-19
Identity = 45/104 (43.27%), Postives = 71/104 (68.27%), Query Frame = 0


Query: 93  EPTSYQEASTDP---LWQKAMNDELQALEKTHIWDYVDLPPGKRLIGCKWIYKIKTHSDG 152
           EP S +E  + P      KAM +E+++L+K   +  V+LP GKR + CKW++K+K   D 
Sbjct: 810 EPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDC 869

Query: 153 TIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVSSLLAVVAA 194
            + RYKARLV KG+ Q+ GID++E F+PV +MTS+ ++L++ A+
Sbjct: 870 KLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRTILSLAAS 913

[Close]

BLAST of Cmc05g0132541 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 87.0 bits (214), Expect = 2.5e-16
Identity = 38/86 (44.19%), Postives = 59/86 (68.60%), Query Frame = 0


Query: 106 WQKAMNDELQALEKTHIWDYVDLPPGKRLIGCKWIYKIKTHSDGTIERYKARLVAKGYSQ 165
           W++A+N EL A +  + W     P  K ++  +W++ +K +  G   RYKARLVA+G++Q
Sbjct: 906 WEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQ 965

Query: 166 EYGIDYEETFAPVARMTSVSSLLAVV 192
           +Y IDYEETFAPVAR++S   +L++V
Sbjct: 966 KYQIDYEETFAPVARISSFRFILSLV 991

[Close]

BLAST of Cmc05g0132541 vs. ExPASy TrEMBL
Match: A0A5D3BI36 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00360 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.2e-98
Identity = 185/195 (94.87%), Postives = 185/195 (94.87%), Query Frame = 0


Query: 1   MFSRLSSFHISFSSPQPFFTDTSIDFFPPSESPLGNELAQSAPTSAISDQSSISDDSPEP 60
           MFSRLSSFH SFSSPQPFFTDTSID FPPSESPLGNELAQSAPTSAISDQSSI DDSPEP
Sbjct: 575 MFSRLSSFHTSFSSPQPFFTDTSIDLFPPSESPLGNELAQSAPTSAISDQSSIPDDSPEP 634

Query: 61  TPDTPPRRSTRVREPLIHLQDYHCFFTIISLVEPTSYQEASTDPLWQKAMNDELQALEKT 120
           TPDTPP RSTRVREP IHLQDYHCF TIISLVEPTSYQEASTDPLWQKAMNDELQALEKT
Sbjct: 635 TPDTPPSRSTRVREPPIHLQDYHCFSTIISLVEPTSYQEASTDPLWQKAMNDELQALEKT 694

Query: 121 HIWDYVDLPPGKRLIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVAR 180
           H WDYVDLPPGKR IGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVAR
Sbjct: 695 HTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVAR 754

Query: 181 MTSVSSLLAVVAAKQ 196
           MTSV SLLAV AAKQ
Sbjct: 755 MTSVRSLLAVAAAKQ 769

[Close]

BLAST of Cmc05g0132541 vs. ExPASy TrEMBL
Match: A0A5A7U9P9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold355G00970 PE=4 SV=1)

HSP 1 Score: 367.5 bits (942), Expect = 3.5e-98
Identity = 185/195 (94.87%), Postives = 185/195 (94.87%), Query Frame = 0


Query: 1   MFSRLSSFHISFSSPQPFFTDTSIDFFPPSESPLGNELAQSAPTSAISDQSSISDDSPEP 60
           MFSRLSSFH SFSSPQPFFTDTSID FPPSESPLGNELAQSAPTSAISDQSSI DDSPEP
Sbjct: 575 MFSRLSSFHTSFSSPQPFFTDTSIDLFPPSESPLGNELAQSAPTSAISDQSSIPDDSPEP 634

Query: 61  TPDTPPRRSTRVREPLIHLQDYHCFFTIISLVEPTSYQEASTDPLWQKAMNDELQALEKT 120
           TPDTPPRRSTRVREP IHLQDYHCF TIISLVE TSYQEASTDPLWQKAMNDELQALEKT
Sbjct: 635 TPDTPPRRSTRVREPPIHLQDYHCFSTIISLVELTSYQEASTDPLWQKAMNDELQALEKT 694

Query: 121 HIWDYVDLPPGKRLIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVAR 180
           H WDYVDLPPGKR IGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVAR
Sbjct: 695 HTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVAR 754

Query: 181 MTSVSSLLAVVAAKQ 196
           MTSV SLLAV AAKQ
Sbjct: 755 MTSVRSLLAVAAAKQ 769

[Close]

BLAST of Cmc05g0132541 vs. ExPASy TrEMBL
Match: A0A5A7VBA1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G002020 PE=4 SV=1)

HSP 1 Score: 357.8 bits (917), Expect = 2.8e-95
Identity = 179/195 (91.79%), Postives = 183/195 (93.85%), Query Frame = 0


Query: 1   MFSRLSSFHISFSSPQPFFTDTSIDFFPPSESPLGNELAQSAPTSAISDQSSISDDSPEP 60
           MFSRLSSFH SFSSPQPFFTDTSID FPPSESP+GNELAQSAPTSA S+QSSIS  SPEP
Sbjct: 175 MFSRLSSFHTSFSSPQPFFTDTSIDLFPPSESPIGNELAQSAPTSATSNQSSISGGSPEP 234

Query: 61  TPDTPPRRSTRVREPLIHLQDYHCFFTIISLVEPTSYQEASTDPLWQKAMNDELQALEKT 120
           TPDTPPRRSTRVREP IHLQDYHCF TIISLVEPTSYQEAS +P+WQKAMNDELQALEKT
Sbjct: 235 TPDTPPRRSTRVREPPIHLQDYHCFSTIISLVEPTSYQEASINPVWQKAMNDELQALEKT 294

Query: 121 HIWDYVDLPPGKRLIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVAR 180
           H WDYVDLPPGKR IGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVAR
Sbjct: 295 HTWDYVDLPPGKRPIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVAR 354

Query: 181 MTSVSSLLAVVAAKQ 196
           MTSV SLLAV AAKQ
Sbjct: 355 MTSVRSLLAVAAAKQ 369

[Close]

BLAST of Cmc05g0132541 vs. ExPASy TrEMBL
Match: A0A5A7U8L8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G00680 PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 8.1e-95
Identity = 179/195 (91.79%), Postives = 180/195 (92.31%), Query Frame = 0


Query: 1   MFSRLSSFHISFSSPQPFFTDTSIDFFPPSESPLGNELAQSAPTSAISDQSSISDDSPEP 60
           MFSRLSSFH SFSSPQPFFT+TSID FPPSESPLGNELAQSAPTS I DQSSISD  PEP
Sbjct: 429 MFSRLSSFHTSFSSPQPFFTNTSIDLFPPSESPLGNELAQSAPTSTILDQSSISDGRPEP 488

Query: 61  TPDTPPRRSTRVREPLIHLQDYHCFFTIISLVEPTSYQEASTDPLWQKAMNDELQALEKT 120
           T DTPPRRST VREP IHLQDYHCF TIISLVEPTSYQEASTDPLWQKAMNDELQALEKT
Sbjct: 489 TSDTPPRRSTWVREPPIHLQDYHCFSTIISLVEPTSYQEASTDPLWQKAMNDELQALEKT 548

Query: 121 HIWDYVDLPPGKRLIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVAR 180
           H WDYVDLPPGKRLIGCKWIYKIKTHSDGTIERYK RLVAKGYSQEYGIDYEETFAPVAR
Sbjct: 549 HTWDYVDLPPGKRLIGCKWIYKIKTHSDGTIERYKTRLVAKGYSQEYGIDYEETFAPVAR 608

Query: 181 MTSVSSLLAVVAAKQ 196
           MTSV SLL V AAKQ
Sbjct: 609 MTSVRSLLVVAAAKQ 623

[Close]

BLAST of Cmc05g0132541 vs. ExPASy TrEMBL
Match: A0A5A7U7G4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G002990 PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 8.1e-95
Identity = 180/195 (92.31%), Postives = 183/195 (93.85%), Query Frame = 0


Query: 1   MFSRLSSFHISFSSPQPFFTDTSIDFFPPSESPLGNELAQSAPTSAISDQSSISDDSPEP 60
           MFSRLSSFH SFSSPQPFFTDTSID FPPSESPLGNELAQ APTSAISDQSSISD SPEP
Sbjct: 503 MFSRLSSFHTSFSSPQPFFTDTSIDLFPPSESPLGNELAQFAPTSAISDQSSISDGSPEP 562

Query: 61  TPDTPPRRSTRVREPLIHLQDYHCFFTIISLVEPTSYQEASTDPLWQKAMNDELQALEKT 120
           T DTPPRRSTRVREP IHLQDYHCF TIISLVEPTSYQEA+T+PLWQKAMNDELQALEKT
Sbjct: 563 TSDTPPRRSTRVREPPIHLQDYHCFSTIISLVEPTSYQEANTNPLWQKAMNDELQALEKT 622

Query: 121 HIWDYVDLPPGKRLIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVAR 180
           H WDYVDLPPGKR IGCKWIYKIKTHS+GTIERYKARLVAKGYSQEYGIDYEETFA VAR
Sbjct: 623 HTWDYVDLPPGKRPIGCKWIYKIKTHSNGTIERYKARLVAKGYSQEYGIDYEETFAYVAR 682

Query: 181 MTSVSSLLAVVAAKQ 196
           MTSV SLLAV AAKQ
Sbjct: 683 MTSVRSLLAVAAAKQ 697

[Close]

BLAST of Cmc05g0132541 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 137.5 bits (345), Expect = 1.1e-32
Identity = 78/183 (42.62%), Postives = 108/183 (59.02%), Query Frame = 0


Query: 37  ELAQSAPTSAISDQSSISDDSPEPTPDTPPRRSTRVREPLIHLQDYHC------------ 96
           + + S+ +  I   ++I +D PEP+  T  RR+   R+P  +LQDY+C            
Sbjct: 6   DASTSSSSIDIMPSANIQNDVPEPSVHTSHRRT---RKP-AYLQDYYCHSVASLTIHDIS 65

Query: 97  ---------------FFTIISLVEPTSYQEASTDPLWQKAMNDELQALEKTHIWDYVDLP 156
                             I    EP++Y EA    +W  AM+DE+ A+E TH W+   LP
Sbjct: 66  QFLSYEKVSPLYHSFLVCIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLP 125

Query: 157 PGKRLIGCKWIYKIKTHSDGTIERYKARLVAKGYSQEYGIDYEETFAPVARMTSVSSLLA 193
           P K+ IGCKW+YKIK +SDGTIERYKARLVAKGY+Q+ GID+ ETF+PV ++TSV  +LA
Sbjct: 126 PNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILA 184

[Close]

BLAST of Cmc05g0132541 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 102.4 bits (254), Expect = 4.1e-22
Identity = 47/98 (47.96%), Postives = 65/98 (66.33%), Query Frame = 0


Query: 93  EPTSYQEASTDPLWQKAMNDELQALEKTHIWDYVDLPPGKRLIGCKWIYKIKTHSDGTIE 152
           EP S   A  DP W +AM +EL AL +   W  V  P  + ++GCKW++K K HSDGT++
Sbjct: 27  EPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLD 86

Query: 153 RYKARLVAKGYSQEYGIDYEETFAPVARMTSVSSLLAV 191
           R KARLVAKG+ QE GI + ET++PV R  ++ ++L V
Sbjct: 87  RLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNV 124

The following BLAST results are available for this feature:

BLAST of Cmc05g0132541 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98155.1	2.5e-98	94.87	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0050251.1	7.3e-98	94.87	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0064888.1	5.8e-95	91.79	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0052263.1	1.7e-94	91.79	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0068117.1	1.7e-94	92.82	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc05g0132541 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P92520	5.7e-21	47.96	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q94HW2	9.8e-21	36.79	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	4.9e-20	35.08	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	1.4e-19	43.27	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.5e-16	44.19	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Cmc05g0132541 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BI36	1.2e-98	94.87	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7U9P9	3.5e-98	94.87	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7VBA1	2.8e-95	91.79	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7U8L8	8.1e-95	91.79	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7U7G4	8.1e-95	92.31	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc05g0132541 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.1e-32	42.62	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	4.1e-22	47.96	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 121..193 e-value: 3.9E-19 score: 69.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..71
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..58
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 71..191

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc05g0132541.1	Cmc05g0132541.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0016020	membrane
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding