Cmc05g0132281 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc05g0132281
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr05: 12181805 .. 12182299 (+)
RNA-Seq Expression	Cmc05g0132281
Synteny	Cmc05g0132281

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTTTAGTTTGACTAATGCTCTTGCGGTATTCATAGACTTGATGAACAGGGTGTTTAAGGATTTCTTAGACACGTTTGTTATAGTTTTCATTGTCTACATTTTGATTTACTCCAAGACTGAGGCTGAGCATGAGGACCATTTGCATCAGGTTTTGGAGACTCTTCGAGCTAATAAATTGTATGCCAAGTTCTCCAAGTTTGAGTTCTGGCTGAAGAAGGTAACTTTTCTCGGCCATGTGGTTTCCAGTGAGGGAGTTTCTGTGGACCCAGCGAAGATCGAAGCAGTTACCAGTTGGCCTCGACCGTCTACAGTTAACGAGGTTCATAGTTTCCTGGGTTTAGTAGGTTACTACAGGAGGTTCGTGGAAGACTTCTCTCGTATAGCCAGTCCCTTGACTCAGTTGACCAGGAAGGGGACTCCTTTTGTTTGGAGCCCAGCTTGTGAGAGTAGCTTTCAGGAGCTTAAGCAGAAACTTATGTCAGAAACTTAA

mRNA sequence

ATGTCCTTTAGTTTGACTAATGCTCTTGCGGTATTCATAGACTTGATGAACAGGGTGTTTAAGGATTTCTTAGACACGTTTGTTATAGTTTTCATTGTCTACATTTTGATTTACTCCAAGACTGAGGCTGAGCATGAGGACCATTTGCATCAGGTTTTGGAGACTCTTCGAGCTAATAAATTGTATGCCAAGTTCTCCAAGTTTGAGTTCTGGCTGAAGAAGGTAACTTTTCTCGGCCATGTGGTTTCCAGTGAGGGAGTTTCTGTGGACCCAGCGAAGATCGAAGCAGTTACCAGTTGGCCTCGACCGTCTACAGTTAACGAGGTTCATAGTTTCCTGGGTTTAGTAGGTTACTACAGGAGGTTCGTGGAAGACTTCTCTCGTATAGCCAGTCCCTTGACTCAGTTGACCAGGAAGGGGACTCCTTTTGTTTGGAGCCCAGCTTGTGAGAGTAGCTTTCAGGAGCTTAAGCAGAAACTTATGTCAGAAACTTAA

Coding sequence (CDS)

ATGTCCTTTAGTTTGACTAATGCTCTTGCGGTATTCATAGACTTGATGAACAGGGTGTTTAAGGATTTCTTAGACACGTTTGTTATAGTTTTCATTGTCTACATTTTGATTTACTCCAAGACTGAGGCTGAGCATGAGGACCATTTGCATCAGGTTTTGGAGACTCTTCGAGCTAATAAATTGTATGCCAAGTTCTCCAAGTTTGAGTTCTGGCTGAAGAAGGTAACTTTTCTCGGCCATGTGGTTTCCAGTGAGGGAGTTTCTGTGGACCCAGCGAAGATCGAAGCAGTTACCAGTTGGCCTCGACCGTCTACAGTTAACGAGGTTCATAGTTTCCTGGGTTTAGTAGGTTACTACAGGAGGTTCGTGGAAGACTTCTCTCGTATAGCCAGTCCCTTGACTCAGTTGACCAGGAAGGGGACTCCTTTTGTTTGGAGCCCAGCTTGTGAGAGTAGCTTTCAGGAGCTTAAGCAGAAACTTATGTCAGAAACTTAA

Protein sequence

MSFSLTNALAVFIDLMNRVFKDFLDTFVIVFIVYILIYSKTEAEHEDHLHQVLETLRANKLYAKFSKFEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTSWPRPSTVNEVHSFLGLVGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLMSET

Homology

[Close]

BLAST of Cmc05g0132281 vs. NCBI nr
Match: KAA0050727.1 (pol protein [Cucumis melo var. makuwa] >TYJ95692.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 292.4 bits (747), Expect = 2.5e-75
Identity = 146/162 (90.12%), Postives = 154/162 (95.06%), Query Frame = 0


Query: 1   MSFSLTNALAVFIDLMNRVFKDFLDTFVIVFIVYILIYSKTEAEHEDHLHQVLETLRANK 60
           MSF LTNALAVF+DLMNRVFKDFLD+FVIVFI  ILIYSKTEAEHE+HLHQVL TLRANK
Sbjct: 188 MSFGLTNALAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLVTLRANK 247

Query: 61  LYAKFSKFEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTSWPRPSTVNEVHSFLGLVGYYR 120
           LYAKFSK EFWLKKVTFLGHVVSSEGVSVDPAKIEAVT+WPRPSTVNE+ SFLGL GYYR
Sbjct: 248 LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVNEIRSFLGLAGYYR 307

Query: 121 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLMS 163
           RFVEDFSRI SPLTQLTRKGTPFVWSPACESSFQE+KQKL++
Sbjct: 308 RFVEDFSRITSPLTQLTRKGTPFVWSPACESSFQEIKQKLVT 349

[Close]

BLAST of Cmc05g0132281 vs. NCBI nr
Match: KAA0066951.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 291.6 bits (745), Expect = 4.3e-75
Identity = 146/162 (90.12%), Postives = 155/162 (95.68%), Query Frame = 0


Query: 1   MSFSLTNALAVFIDLMNRVFKDFLDTFVIVFIVYILIYSKTEAEHEDHLHQVLETLRANK 60
           MSF LTNA AVF+DLMNRVFKDFLD+FVIVFI  ILIYSKTEAEHE+HLHQVLETLRANK
Sbjct: 521 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 580

Query: 61  LYAKFSKFEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTSWPRPSTVNEVHSFLGLVGYYR 120
           LYAKFSK EFWL+KVTFLGHVVSSEGVSVDPAKIEAVT+WPRPSTV+E+ SFLGL GYYR
Sbjct: 581 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 640

Query: 121 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLMS 163
           RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKL++
Sbjct: 641 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVT 682

[Close]

BLAST of Cmc05g0132281 vs. NCBI nr
Match: KAA0066101.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 291.6 bits (745), Expect = 4.3e-75
Identity = 146/162 (90.12%), Postives = 155/162 (95.68%), Query Frame = 0


Query: 1   MSFSLTNALAVFIDLMNRVFKDFLDTFVIVFIVYILIYSKTEAEHEDHLHQVLETLRANK 60
           MSF LTNALAVF+DLMNRVFKDFLD+FVIVFI  ILIYSKTEAEHE+HLHQVLETLRANK
Sbjct: 713 MSFGLTNALAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 772

Query: 61  LYAKFSKFEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTSWPRPSTVNEVHSFLGLVGYYR 120
           LYAKFSK EFWLKKVTFLGHVVSS+GVSVDPAKIEAVT+WPRPSTV+E+ SFLGL GYYR
Sbjct: 773 LYAKFSKCEFWLKKVTFLGHVVSSDGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 832

Query: 121 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLMS 163
           RFVEDFSRIASPLT LTRKGTPFVWSPACESSFQELKQKL++
Sbjct: 833 RFVEDFSRIASPLTLLTRKGTPFVWSPACESSFQELKQKLVT 874

[Close]

BLAST of Cmc05g0132281 vs. NCBI nr
Match: KAA0054634.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 291.6 bits (745), Expect = 4.3e-75
Identity = 146/162 (90.12%), Postives = 155/162 (95.68%), Query Frame = 0


Query: 1   MSFSLTNALAVFIDLMNRVFKDFLDTFVIVFIVYILIYSKTEAEHEDHLHQVLETLRANK 60
           MSF LTNA AVF+DLMNRVFKDFLD+FVIVFI  ILIYSKTEAEHE+HLHQVLETLRANK
Sbjct: 682 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 741

Query: 61  LYAKFSKFEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTSWPRPSTVNEVHSFLGLVGYYR 120
           LYAKFSK EFWL+KVTFLGHVVSSEGVSVDPAKIEAVT+WPRPSTV+E+ SFLGL GYYR
Sbjct: 742 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 801

Query: 121 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLMS 163
           RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKL++
Sbjct: 802 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVT 843

[Close]

BLAST of Cmc05g0132281 vs. NCBI nr
Match: KAA0060745.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 291.2 bits (744), Expect = 5.6e-75
Identity = 146/161 (90.68%), Postives = 154/161 (95.65%), Query Frame = 0


Query: 1   MSFSLTNALAVFIDLMNRVFKDFLDTFVIVFIVYILIYSKTEAEHEDHLHQVLETLRANK 60
           MSF LTNA AVF+DLMNRVFKDFLD+FVIVFI  ILIYSKTEAEHE+HLHQVLETLRANK
Sbjct: 685 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 744

Query: 61  LYAKFSKFEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTSWPRPSTVNEVHSFLGLVGYYR 120
           LYAKFSK EFWL+KVTFLGHVVSSEGVSVDPAKIEAVT+WPRPSTV+E+ SFLGL GYYR
Sbjct: 745 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 804

Query: 121 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLM 162
           RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKL+
Sbjct: 805 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLV 845

[Close]

BLAST of Cmc05g0132281 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 1.1e-22
Identity = 61/164 (37.20%), Postives = 97/164 (59.15%), Query Frame = 0


Query: 1   MSFSLTNALAVFIDLMNRVFKDFLDTFVIVFIVYILIYSKTEAEHEDHLHQVLETLRANK 60
           M F L NA A F   MN + +  L+   +V++  I+++S +  EH   L  V E L    
Sbjct: 334 MPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKAN 393

Query: 61  LYAKFSKFEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTSWPRPSTVNEVHSFLGLVGYYR 120
           L  +  K EF  ++ TFLGHV++ +G+  +P KIEA+  +P P+   E+ +FLGL GYYR
Sbjct: 394 LKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYR 453

Query: 121 RFVEDFSRIASPLTQLTRKGTPF-VWSPACESSFQELKQKLMSE 164
           +F+ +F+ IA P+T+  +K       +P  +S+F++LK  L+SE
Sbjct: 454 KFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKY-LISE 496

[Close]

BLAST of Cmc05g0132281 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 6.3e-21
Identity = 51/141 (36.17%), Postives = 83/141 (58.87%), Query Frame = 0


Query: 1   MSFSLTNALAVFIDLMNRVFKDFLDTFVIVFIVYILIYSKTEAEHEDHLHQVLETLRANK 60
           M F L NA A F   MN + +  L+   +V++  I+I+S +  EH + +  V   L    
Sbjct: 333 MPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADAN 392

Query: 61  LYAKFSKFEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTSWPRPSTVNEVHSFLGLVGYYR 120
           L  +  K EF  K+  FLGH+V+ +G+  +P K++A+ S+P P+   E+ +FLGL GYYR
Sbjct: 393 LKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYR 452

Query: 121 RFVEDFSRIASPLTQLTRKGT 142
           +F+ +++ IA P+T   +K T
Sbjct: 453 KFIPNYADIAKPMTSCLKKRT 473

[Close]

BLAST of Cmc05g0132281 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.4e-20
Identity = 54/173 (31.21%), Postives = 92/173 (53.18%), Query Frame = 0


Query: 1   MSFSLTNALAVFIDLMNRVFKDFLDTFVIVFIVYILIYSKTEAEHEDHLHQVLETLRANK 60
           + F L NA A+F  +++ + ++ +     V+I  I+++S+    H  +L  VL +L    
Sbjct: 250 LPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKAN 309

Query: 61  LYAKFSKFEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTSWPRPSTVNEVHSFLGLVGYYR 120
           L     K  F   +V FLG++V+++G+  DP K+ A++  P P++V E+  FLG+  YYR
Sbjct: 310 LQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYR 369

Query: 121 RFVEDFSRIASPLTQLTR-----------KGTPFVWSPACESSFQELKQKLMS 163
           +F++D++++A PLT LTR              P         SF +LK  L S
Sbjct: 370 KFIQDYAKVAKPLTNLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCS 422

[Close]

BLAST of Cmc05g0132281 vs. ExPASy Swiss-Prot
Match: P92523 (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 GN=AtMg00860 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.1e-20
Identity = 47/113 (41.59%), Postives = 69/113 (61.06%), Query Frame = 0


Query: 47  DHLHQVLETLRANKLYAKFSKFEFWLKKVTFLG--HVVSSEGVSVDPAKIEAVTSWPRPS 106
           +HL  VL+    ++ YA   K  F   ++ +LG  H++S EGVS DPAK+EA+  WP P 
Sbjct: 2   NHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPK 61

Query: 107 TVNEVHSFLGLVGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELK 158
              E+  FLGL GYYRRFV+++ +I  PLT+L +K +   W+     +F+ LK
Sbjct: 62  NTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALK 113

[Close]

BLAST of Cmc05g0132281 vs. ExPASy Swiss-Prot
Match: P10401 (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 7.0e-20
Identity = 54/174 (31.03%), Postives = 94/174 (54.02%), Query Frame = 0


Query: 1   MSFSLTNALAVFIDLMNRVFKDFLDTFVIVFIVYILIYSKTEAEHEDHLHQVLETLRANK 60
           + F L NA ++F   ++ V ++ +     V++  ++I+S+ E++H  H+  VL+ L    
Sbjct: 309 LPFGLRNASSIFQRALDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDAN 368

Query: 61  LYAKFSKFEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTSWPRPSTVNEVHSFLGLVGYYR 120
           +     K  F+ + V +LG +VS +G   DP K++A+  +P P  V +V SFLGL  YYR
Sbjct: 369 MRVSQEKTRFFKESVEYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYR 428

Query: 121 RFVEDFSRIASPLTQLTR-----------KGTPFVWSPACESSFQELKQKLMSE 164
            F++DF+ IA P+T + +           K  P  ++    ++FQ L+  L SE
Sbjct: 429 VFIKDFAAIARPITDILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASE 482

[Close]

BLAST of Cmc05g0132281 vs. ExPASy TrEMBL
Match: A0A5D3B768 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00190 PE=4 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 1.2e-75
Identity = 146/162 (90.12%), Postives = 154/162 (95.06%), Query Frame = 0


Query: 1   MSFSLTNALAVFIDLMNRVFKDFLDTFVIVFIVYILIYSKTEAEHEDHLHQVLETLRANK 60
           MSF LTNALAVF+DLMNRVFKDFLD+FVIVFI  ILIYSKTEAEHE+HLHQVL TLRANK
Sbjct: 188 MSFGLTNALAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLVTLRANK 247

Query: 61  LYAKFSKFEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTSWPRPSTVNEVHSFLGLVGYYR 120
           LYAKFSK EFWLKKVTFLGHVVSSEGVSVDPAKIEAVT+WPRPSTVNE+ SFLGL GYYR
Sbjct: 248 LYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVNEIRSFLGLAGYYR 307

Query: 121 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLMS 163
           RFVEDFSRI SPLTQLTRKGTPFVWSPACESSFQE+KQKL++
Sbjct: 308 RFVEDFSRITSPLTQLTRKGTPFVWSPACESSFQEIKQKLVT 349

[Close]

BLAST of Cmc05g0132281 vs. ExPASy TrEMBL
Match: A0A5A7VMR4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold550G00890 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.1e-75
Identity = 146/162 (90.12%), Postives = 155/162 (95.68%), Query Frame = 0


Query: 1   MSFSLTNALAVFIDLMNRVFKDFLDTFVIVFIVYILIYSKTEAEHEDHLHQVLETLRANK 60
           MSF LTNA AVF+DLMNRVFKDFLD+FVIVFI  ILIYSKTEAEHE+HLHQVLETLRANK
Sbjct: 521 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 580

Query: 61  LYAKFSKFEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTSWPRPSTVNEVHSFLGLVGYYR 120
           LYAKFSK EFWL+KVTFLGHVVSSEGVSVDPAKIEAVT+WPRPSTV+E+ SFLGL GYYR
Sbjct: 581 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 640

Query: 121 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLMS 163
           RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKL++
Sbjct: 641 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVT 682

[Close]

BLAST of Cmc05g0132281 vs. ExPASy TrEMBL
Match: A0A5A7UHL7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004390 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.1e-75
Identity = 146/162 (90.12%), Postives = 155/162 (95.68%), Query Frame = 0


Query: 1   MSFSLTNALAVFIDLMNRVFKDFLDTFVIVFIVYILIYSKTEAEHEDHLHQVLETLRANK 60
           MSF LTNA AVF+DLMNRVFKDFLD+FVIVFI  ILIYSKTEAEHE+HLHQVLETLRANK
Sbjct: 682 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 741

Query: 61  LYAKFSKFEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTSWPRPSTVNEVHSFLGLVGYYR 120
           LYAKFSK EFWL+KVTFLGHVVSSEGVSVDPAKIEAVT+WPRPSTV+E+ SFLGL GYYR
Sbjct: 742 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 801

Query: 121 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLMS 163
           RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKL++
Sbjct: 802 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVT 843

[Close]

BLAST of Cmc05g0132281 vs. ExPASy TrEMBL
Match: A0A5A7VK60 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21G00930 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 2.1e-75
Identity = 146/162 (90.12%), Postives = 155/162 (95.68%), Query Frame = 0


Query: 1   MSFSLTNALAVFIDLMNRVFKDFLDTFVIVFIVYILIYSKTEAEHEDHLHQVLETLRANK 60
           MSF LTNALAVF+DLMNRVFKDFLD+FVIVFI  ILIYSKTEAEHE+HLHQVLETLRANK
Sbjct: 713 MSFGLTNALAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 772

Query: 61  LYAKFSKFEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTSWPRPSTVNEVHSFLGLVGYYR 120
           LYAKFSK EFWLKKVTFLGHVVSS+GVSVDPAKIEAVT+WPRPSTV+E+ SFLGL GYYR
Sbjct: 773 LYAKFSKCEFWLKKVTFLGHVVSSDGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 832

Query: 121 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLMS 163
           RFVEDFSRIASPLT LTRKGTPFVWSPACESSFQELKQKL++
Sbjct: 833 RFVEDFSRIASPLTLLTRKGTPFVWSPACESSFQELKQKLVT 874

[Close]

BLAST of Cmc05g0132281 vs. ExPASy TrEMBL
Match: A0A5A7V4E4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72G00400 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 2.7e-75
Identity = 146/161 (90.68%), Postives = 154/161 (95.65%), Query Frame = 0


Query: 1   MSFSLTNALAVFIDLMNRVFKDFLDTFVIVFIVYILIYSKTEAEHEDHLHQVLETLRANK 60
           MSF LTNA AVF+DLMNRVFKDFLD+FVIVFI  ILIYSKTEAEHE+HLHQVLETLRANK
Sbjct: 685 MSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANK 744

Query: 61  LYAKFSKFEFWLKKVTFLGHVVSSEGVSVDPAKIEAVTSWPRPSTVNEVHSFLGLVGYYR 120
           LYAKFSK EFWL+KVTFLGHVVSSEGVSVDPAKIEAVT+WPRPSTV+E+ SFLGL GYYR
Sbjct: 745 LYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYR 804

Query: 121 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLM 162
           RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKL+
Sbjct: 805 RFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELKQKLV 845

[Close]

BLAST of Cmc05g0132281 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 99.4 bits (246), Expect = 2.9e-21
Identity = 47/113 (41.59%), Postives = 69/113 (61.06%), Query Frame = 0


Query: 47  DHLHQVLETLRANKLYAKFSKFEFWLKKVTFLG--HVVSSEGVSVDPAKIEAVTSWPRPS 106
           +HL  VL+    ++ YA   K  F   ++ +LG  H++S EGVS DPAK+EA+  WP P 
Sbjct: 2   NHLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPK 61

Query: 107 TVNEVHSFLGLVGYYRRFVEDFSRIASPLTQLTRKGTPFVWSPACESSFQELK 158
              E+  FLGL GYYRRFV+++ +I  PLT+L +K +   W+     +F+ LK
Sbjct: 62  NTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKALK 113

The following BLAST results are available for this feature:

BLAST of Cmc05g0132281 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050727.1	2.5e-75	90.12	pol protein [Cucumis melo var. makuwa] >TYJ95692.1 pol protein [Cucumis melo var...	[more]
KAA0066951.1	4.3e-75	90.12	pol protein [Cucumis melo var. makuwa]	[more]
KAA0066101.1	4.3e-75	90.12	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0054634.1	4.3e-75	90.12	pol protein [Cucumis melo var. makuwa]	[more]
KAA0060745.1	5.6e-75	90.68	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc05g0132281 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	1.1e-22	37.20	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	6.3e-21	36.17	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q8I7P9	2.4e-20	31.21	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P92523	4.1e-20	41.59	Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 ...	[more]
P10401	7.0e-20	31.03	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas...	[more]

BLAST of Cmc05g0132281 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3B768	1.2e-75	90.12	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00190 PE...	[more]
A0A5A7VMR4	2.1e-75	90.12	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55...	[more]
A0A5A7UHL7	2.1e-75	90.12	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24...	[more]
A0A5A7VK60	2.1e-75	90.12	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold21...	[more]
A0A5A7V4E4	2.7e-75	90.68	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72...	[more]

BLAST of Cmc05g0132281 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	2.9e-21	41.59	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..88 e-value: 3.8E-26 score: 93.5
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 92..164 e-value: 1.1E-28 score: 101.1
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 18..161
None	No IPR available	PANTHER	PTHR24559:SF345	SUBFAMILY NOT NAMED	coord: 18..161
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..82 e-value: 7.83146E-30 score: 105.37
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 1..163

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc05g0132281.1	Cmc05g0132281.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding