Cmc05g0132001 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc05g0132001
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Pol protein
Location	CMiso1.1chr05: 11884839 .. 11885715 (-)
RNA-Seq Expression	Cmc05g0132001
Synteny	Cmc05g0132001

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTCATTACAGGGCTACCGAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGACTTACTAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTATACTGCTAGTAAGTGGGCACAGTTGTACATGTCTGAGATAGTGAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTTTGGAAGGGTTTGCAGACTGCTATGGGCACGAGGTTGGACTTTAGTACGGCTTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAGGTTTTAGAGGATATGTTGCGGGCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCACTTACATTTGGTGGAATTTGCTTATAATAACAGTTATCAGGCTACTATTGGCATGGCACCGTTTGAGGCCCTGTACGGCAGATGTTGTAGATCCCCGGTTTGCTGGGATGAGGTAGGTGAGCAAAGATTGATCGGTCCTGAGTTAGTCCAGTCTACTAACGAAGCTATACAGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGACAGAAGAGTTATGCAGATGTGAGGCGGAAGGACCTTGAGTTCGAGATAGGGGATAAGGTGTTCTTAAAGGTAGCACCTATGAAAGGTGTCTTGCGTTTTGAAAGGAGGGGAAAGTTGAGTCCCCGTTTTGTTGGGCCATTTGAGATTCTGGAGCGGATTGGCCCTGTAGCTTATCGCTTGGCGTTACCTCCATCACTCTCGGCAGTCCATGATGTGTTTCACGTTTCTATGTTGAGGAAGTACGTGCCAGATCCATCCCATGTAGTGGATTACGAGCCACTAGAGATTGATGAAAACTTGA

mRNA sequence

ATGGATTTCATTACAGGGCTACCGAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGACTTACTAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTATACTGCTAGTAAGTGGGCACAGTTGTACATGTCTGAGATAGTGAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTTTGGAAGGGTTTGCAGACTGCTATGGGCACGAGGTTGGACTTTAGTACGGCTTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAGGTTTTAGAGGATATGTTGCGGGCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCACTTACATTTGGTGGAATTTGCTTATAATAACAGTTATCAGGCTACTATTGGCATGGCACCGTTTGAGGCCCTGTACGGCAGATGTTGTAGATCCCCGGTTTGCTGGGATGAGGTAGGTGAGCAAAGATTGATCGGTCCTGAGTTAGTCCAGTCTACTAACGAAGCTATACAGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGACAGAAGAGTTATGCAGATGTGAGGCGGAAGGACCTTGAGTTCGAGATAGGGGATAAGGTGTTCTTAAAGGTAGCACCTATGAAAGGTGTCTTGCGTTTTGAAAGGAGGGGAAAGTTGAGTCCCCGTTTTGTTGGGCCATTTGAGATTCTGGAGCGGATTGGCCCTGTAGCTTATCGCTTGGCGTTACCTCCATCACTCTCGGCAGTCCATGATGTGTTTCACGTTTCTATGTTGAGGAAATTGATGAAAACTTGA

Coding sequence (CDS)

ATGGATTTCATTACAGGGCTACCGAGAACTCTGAGGGGTTTTACAGTGATTTGGGTTGTGGTGGACAGACTTACTAAATCAGCGCACTTCGTTCCGGGTAAATCCACCTATACTGCTAGTAAGTGGGCACAGTTGTACATGTCTGAGATAGTGAGATTACATGGAGTGCCAGTGTCGATTGTTTCTGATAGAGATGCCCGTTTCACTTCCAAATTTTGGAAGGGTTTGCAGACTGCTATGGGCACGAGGTTGGACTTTAGTACGGCTTTCCATCCACAGACTGACGGTCAGACTGAGCGTCTGAACCAGGTTTTAGAGGATATGTTGCGGGCGTGTGCATTGGAATTTCCAGGTAGCTGGGACTCCCACTTACATTTGGTGGAATTTGCTTATAATAACAGTTATCAGGCTACTATTGGCATGGCACCGTTTGAGGCCCTGTACGGCAGATGTTGTAGATCCCCGGTTTGCTGGGATGAGGTAGGTGAGCAAAGATTGATCGGTCCTGAGTTAGTCCAGTCTACTAACGAAGCTATACAGAAGATTAGATCACGCATGCATACCGCTCAGAGTAGACAGAAGAGTTATGCAGATGTGAGGCGGAAGGACCTTGAGTTCGAGATAGGGGATAAGGTGTTCTTAAAGGTAGCACCTATGAAAGGTGTCTTGCGTTTTGAAAGGAGGGGAAAGTTGAGTCCCCGTTTTGTTGGGCCATTTGAGATTCTGGAGCGGATTGGCCCTGTAGCTTATCGCTTGGCGTTACCTCCATCACTCTCGGCAGTCCATGATGTGTTTCACGTTTCTATGTTGAGGAAATTGATGAAAACTTGA

Protein sequence

MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSIVSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSWDSHLHLVEFAYNNSYQATIGMAPFEALYGRCCRSPVCWDEVGEQRLIGPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFEILERIGPVAYRLALPPSLSAVHDVFHVSMLRKLMKT

Homology

[Close]

BLAST of Cmc05g0132001 vs. NCBI nr
Match: KAA0041424.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 552.7 bits (1423), Expect = 1.7e-153
Identity = 266/272 (97.79%), Postives = 272/272 (100.00%), Query Frame = 0


Query: 1   MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 60
           MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI
Sbjct: 1   MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 60

Query: 61  VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
           VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 61  VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120

Query: 121 DSHLHLVEFAYNNSYQATIGMAPFEALYGRCCRSPVCWDEVGEQRLIGPELVQSTNEAIQ 180
           DSHLHL+EFAYNNSYQATIGMAPFEALYG+CCRSPVCWDEVGEQRL+GPELVQSTNEA+Q
Sbjct: 121 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWDEVGEQRLMGPELVQSTNEAVQ 180

Query: 181 KIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFE 240
           KIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPMKGVLRFERRGKLSPRFVGPFE
Sbjct: 181 KIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFE 240

Query: 241 ILERIGPVAYRLALPPSLSAVHDVFHVSMLRK 273
           ILER+GPVAYRLALPPSLSAVHDVFHVSMLRK
Sbjct: 241 ILERVGPVAYRLALPPSLSAVHDVFHVSMLRK 272

[Close]

BLAST of Cmc05g0132001 vs. NCBI nr
Match: KAA0043401.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 552.0 bits (1421), Expect = 3.0e-153
Identity = 268/272 (98.53%), Postives = 271/272 (99.63%), Query Frame = 0


Query: 1   MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 60
           MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI
Sbjct: 44  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 103

Query: 61  VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
           VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 104 VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 163

Query: 121 DSHLHLVEFAYNNSYQATIGMAPFEALYGRCCRSPVCWDEVGEQRLIGPELVQSTNEAIQ 180
           DSHLHL+EFAYNNSYQATIGMAPFEALYGRCCRSPVCW EVGEQRL+GPELVQSTNEAIQ
Sbjct: 164 DSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 223

Query: 181 KIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFE 240
           KIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFE
Sbjct: 224 KIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFE 283

Query: 241 ILERIGPVAYRLALPPSLSAVHDVFHVSMLRK 273
           ILERIGPVAYRLALPPSLSAVHDVFH+SMLRK
Sbjct: 284 ILERIGPVAYRLALPPSLSAVHDVFHISMLRK 315

[Close]

BLAST of Cmc05g0132001 vs. NCBI nr
Match: KAA0064005.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 550.8 bits (1418), Expect = 6.6e-153
Identity = 268/272 (98.53%), Postives = 270/272 (99.26%), Query Frame = 0


Query: 1   MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 60
           MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI
Sbjct: 272 MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 331

Query: 61  VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
           VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 332 VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 391

Query: 121 DSHLHLVEFAYNNSYQATIGMAPFEALYGRCCRSPVCWDEVGEQRLIGPELVQSTNEAIQ 180
           DSHLHL+EFAYNNSYQATIGM PFEALYGRCCRSPVCW EVGEQRL+GPELVQSTNEAIQ
Sbjct: 392 DSHLHLMEFAYNNSYQATIGMTPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 451

Query: 181 KIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFE 240
           KIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFE
Sbjct: 452 KIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFE 511

Query: 241 ILERIGPVAYRLALPPSLSAVHDVFHVSMLRK 273
           ILERIGPVAYRLALPPSLSAVHDVFHVSMLRK
Sbjct: 512 ILERIGPVAYRLALPPSLSAVHDVFHVSMLRK 543

[Close]

BLAST of Cmc05g0132001 vs. NCBI nr
Match: KAA0051368.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 550.8 bits (1418), Expect = 6.6e-153
Identity = 268/272 (98.53%), Postives = 270/272 (99.26%), Query Frame = 0


Query: 1    MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 60
            MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI
Sbjct: 1102 MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 1161

Query: 61   VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
            VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 1162 VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 1221

Query: 121  DSHLHLVEFAYNNSYQATIGMAPFEALYGRCCRSPVCWDEVGEQRLIGPELVQSTNEAIQ 180
            DSHLHL+EFAYNNSYQATIGMAPFEALYGRCCRSPVCW EVGEQRL+GPELVQSTNEAIQ
Sbjct: 1222 DSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 1281

Query: 181  KIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFE 240
            KIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFE
Sbjct: 1282 KIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFE 1341

Query: 241  ILERIGPVAYRLALPPSLSAVHDVFHVSMLRK 273
            ILERIGPVAYRLALPPSLS VHDVFHVSMLRK
Sbjct: 1342 ILERIGPVAYRLALPPSLSTVHDVFHVSMLRK 1373

[Close]

BLAST of Cmc05g0132001 vs. NCBI nr
Match: AAO45752.1 (pol protein [Cucumis melo subsp. melo])

HSP 1 Score: 550.4 bits (1417), Expect = 8.6e-153
Identity = 267/272 (98.16%), Postives = 270/272 (99.26%), Query Frame = 0


Query: 1   MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 60
           MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI
Sbjct: 577 MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 636

Query: 61  VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
           VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 637 VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 696

Query: 121 DSHLHLVEFAYNNSYQATIGMAPFEALYGRCCRSPVCWDEVGEQRLIGPELVQSTNEAIQ 180
           DSHLHL+EFAYNNSYQATIGMAPFEALYGRCCRSPVCW EVGEQRL+GPELVQSTNEAIQ
Sbjct: 697 DSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 756

Query: 181 KIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFE 240
           KIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPMKGVLRFERRGKLSPRFVGPFE
Sbjct: 757 KIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFE 816

Query: 241 ILERIGPVAYRLALPPSLSAVHDVFHVSMLRK 273
           ILERIGPVAYRLALPPSLS VHDVFHVSMLRK
Sbjct: 817 ILERIGPVAYRLALPPSLSTVHDVFHVSMLRK 848

[Close]

BLAST of Cmc05g0132001 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.0e-39
Identity = 97/275 (35.27%), Postives = 147/275 (53.45%), Query Frame = 0


Query: 1    MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 60
            MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I
Sbjct: 989  MDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
            ++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR      P +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

Query: 121  DSHLHLVEFAYNNSYQATIGMAPFEALYGRC-CRSPVCWDEVGEQRLIGPELVQSTNEAI 180
              H+ LV+ +YNN+  +   M PFE ++      SP+      ++     E  Q T +  
Sbjct: 1109 VDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKT---DENSQETIQVF 1168

Query: 181  QKIRSRMHTAQSRQKSYADVRRKDL-EFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGP 240
            Q ++  ++T   + K Y D++ +++ EF+ GD V +K     G L   +  KL+P F GP
Sbjct: 1169 QTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFL--HKSNKLAPSFAGP 1228

Query: 241  FEILERIGPVAYRLALPPSLSAV-HDVFHVSMLRK 273
            F +L++ GP  Y L LP S+  +    FHVS L K
Sbjct: 1229 FYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEK 1256

[Close]

BLAST of Cmc05g0132001 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.0e-39
Identity = 97/275 (35.27%), Postives = 147/275 (53.45%), Query Frame = 0


Query: 1    MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 60
            MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I
Sbjct: 989  MDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
            ++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR      P +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

Query: 121  DSHLHLVEFAYNNSYQATIGMAPFEALYGRC-CRSPVCWDEVGEQRLIGPELVQSTNEAI 180
              H+ LV+ +YNN+  +   M PFE ++      SP+      ++     E  Q T +  
Sbjct: 1109 VDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKT---DENSQETIQVF 1168

Query: 181  QKIRSRMHTAQSRQKSYADVRRKDL-EFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGP 240
            Q ++  ++T   + K Y D++ +++ EF+ GD V +K     G L   +  KL+P F GP
Sbjct: 1169 QTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFL--HKSNKLAPSFAGP 1228

Query: 241  FEILERIGPVAYRLALPPSLSAV-HDVFHVSMLRK 273
            F +L++ GP  Y L LP S+  +    FHVS L K
Sbjct: 1229 FYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEK 1256

[Close]

BLAST of Cmc05g0132001 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.0e-39
Identity = 97/275 (35.27%), Postives = 147/275 (53.45%), Query Frame = 0


Query: 1    MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 60
            MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I
Sbjct: 989  MDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
            ++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR      P +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

Query: 121  DSHLHLVEFAYNNSYQATIGMAPFEALYGRC-CRSPVCWDEVGEQRLIGPELVQSTNEAI 180
              H+ LV+ +YNN+  +   M PFE ++      SP+      ++     E  Q T +  
Sbjct: 1109 VDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKT---DENSQETIQVF 1168

Query: 181  QKIRSRMHTAQSRQKSYADVRRKDL-EFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGP 240
            Q ++  ++T   + K Y D++ +++ EF+ GD V +K     G L   +  KL+P F GP
Sbjct: 1169 QTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFL--HKSNKLAPSFAGP 1228

Query: 241  FEILERIGPVAYRLALPPSLSAV-HDVFHVSMLRK 273
            F +L++ GP  Y L LP S+  +    FHVS L K
Sbjct: 1229 FYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEK 1256

[Close]

BLAST of Cmc05g0132001 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.0e-39
Identity = 97/275 (35.27%), Postives = 147/275 (53.45%), Query Frame = 0


Query: 1    MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 60
            MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I
Sbjct: 989  MDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
            ++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR      P +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

Query: 121  DSHLHLVEFAYNNSYQATIGMAPFEALYGRC-CRSPVCWDEVGEQRLIGPELVQSTNEAI 180
              H+ LV+ +YNN+  +   M PFE ++      SP+      ++     E  Q T +  
Sbjct: 1109 VDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKT---DENSQETIQVF 1168

Query: 181  QKIRSRMHTAQSRQKSYADVRRKDL-EFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGP 240
            Q ++  ++T   + K Y D++ +++ EF+ GD V +K     G L   +  KL+P F GP
Sbjct: 1169 QTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFL--HKSNKLAPSFAGP 1228

Query: 241  FEILERIGPVAYRLALPPSLSAV-HDVFHVSMLRK 273
            F +L++ GP  Y L LP S+  +    FHVS L K
Sbjct: 1229 FYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEK 1256

[Close]

BLAST of Cmc05g0132001 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.0e-39
Identity = 97/275 (35.27%), Postives = 147/275 (53.45%), Query Frame = 0


Query: 1    MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 60
            MDFIT LP +  G+  ++VVVDR +K A  VP   + TA + A+++   ++   G P  I
Sbjct: 989  MDFITALPES-SGYNALFVVVDRFSKMAILVPCTKSITAEQTARMFDQRVIAYFGNPKEI 1048

Query: 61   VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
            ++D D  FTS+ WK         + FS  + PQTDGQTER NQ +E +LR      P +W
Sbjct: 1049 IADNDHIFTSQTWKDFAHKYNFVMKFSLPYRPQTDGQTERTNQTVEKLLRCVCSTHPNTW 1108

Query: 121  DSHLHLVEFAYNNSYQATIGMAPFEALYGRC-CRSPVCWDEVGEQRLIGPELVQSTNEAI 180
              H+ LV+ +YNN+  +   M PFE ++      SP+      ++     E  Q T +  
Sbjct: 1109 VDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKT---DENSQETIQVF 1168

Query: 181  QKIRSRMHTAQSRQKSYADVRRKDL-EFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGP 240
            Q ++  ++T   + K Y D++ +++ EF+ GD V +K     G L   +  KL+P F GP
Sbjct: 1169 QTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFL--HKSNKLAPSFAGP 1228

Query: 241  FEILERIGPVAYRLALPPSLSAV-HDVFHVSMLRK 273
            F +L++ GP  Y L LP S+  +    FHVS L K
Sbjct: 1229 FYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEK 1256

[Close]

BLAST of Cmc05g0132001 vs. ExPASy TrEMBL
Match: A0A5A7TDB5 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41502G00010 PE=4 SV=1)

HSP 1 Score: 552.7 bits (1423), Expect = 8.4e-154
Identity = 266/272 (97.79%), Postives = 272/272 (100.00%), Query Frame = 0


Query: 1   MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 60
           MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI
Sbjct: 1   MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 60

Query: 61  VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
           VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 61  VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120

Query: 121 DSHLHLVEFAYNNSYQATIGMAPFEALYGRCCRSPVCWDEVGEQRLIGPELVQSTNEAIQ 180
           DSHLHL+EFAYNNSYQATIGMAPFEALYG+CCRSPVCWDEVGEQRL+GPELVQSTNEA+Q
Sbjct: 121 DSHLHLMEFAYNNSYQATIGMAPFEALYGKCCRSPVCWDEVGEQRLMGPELVQSTNEAVQ 180

Query: 181 KIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFE 240
           KIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPMKGVLRFERRGKLSPRFVGPFE
Sbjct: 181 KIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFE 240

Query: 241 ILERIGPVAYRLALPPSLSAVHDVFHVSMLRK 273
           ILER+GPVAYRLALPPSLSAVHDVFHVSMLRK
Sbjct: 241 ILERVGPVAYRLALPPSLSAVHDVFHVSMLRK 272

[Close]

BLAST of Cmc05g0132001 vs. ExPASy TrEMBL
Match: A0A5A7TPA9 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18932G00010 PE=4 SV=1)

HSP 1 Score: 552.0 bits (1421), Expect = 1.4e-153
Identity = 268/272 (98.53%), Postives = 271/272 (99.63%), Query Frame = 0


Query: 1   MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 60
           MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI
Sbjct: 44  MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 103

Query: 61  VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
           VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 104 VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 163

Query: 121 DSHLHLVEFAYNNSYQATIGMAPFEALYGRCCRSPVCWDEVGEQRLIGPELVQSTNEAIQ 180
           DSHLHL+EFAYNNSYQATIGMAPFEALYGRCCRSPVCW EVGEQRL+GPELVQSTNEAIQ
Sbjct: 164 DSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 223

Query: 181 KIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFE 240
           KIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFE
Sbjct: 224 KIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFE 283

Query: 241 ILERIGPVAYRLALPPSLSAVHDVFHVSMLRK 273
           ILERIGPVAYRLALPPSLSAVHDVFH+SMLRK
Sbjct: 284 ILERIGPVAYRLALPPSLSAVHDVFHISMLRK 315

[Close]

BLAST of Cmc05g0132001 vs. ExPASy TrEMBL
Match: A0A5A7VDP3 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1536G00010 PE=4 SV=1)

HSP 1 Score: 550.8 bits (1418), Expect = 3.2e-153
Identity = 268/272 (98.53%), Postives = 270/272 (99.26%), Query Frame = 0


Query: 1   MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 60
           MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI
Sbjct: 272 MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 331

Query: 61  VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
           VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 332 VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 391

Query: 121 DSHLHLVEFAYNNSYQATIGMAPFEALYGRCCRSPVCWDEVGEQRLIGPELVQSTNEAIQ 180
           DSHLHL+EFAYNNSYQATIGM PFEALYGRCCRSPVCW EVGEQRL+GPELVQSTNEAIQ
Sbjct: 392 DSHLHLMEFAYNNSYQATIGMTPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 451

Query: 181 KIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFE 240
           KIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFE
Sbjct: 452 KIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFE 511

Query: 241 ILERIGPVAYRLALPPSLSAVHDVFHVSMLRK 273
           ILERIGPVAYRLALPPSLSAVHDVFHVSMLRK
Sbjct: 512 ILERIGPVAYRLALPPSLSAVHDVFHVSMLRK 543

[Close]

BLAST of Cmc05g0132001 vs. ExPASy TrEMBL
Match: A0A5A7U7V9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00950 PE=4 SV=1)

HSP 1 Score: 550.8 bits (1418), Expect = 3.2e-153
Identity = 268/272 (98.53%), Postives = 270/272 (99.26%), Query Frame = 0


Query: 1    MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 60
            MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI
Sbjct: 1102 MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 1161

Query: 61   VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
            VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 1162 VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 1221

Query: 121  DSHLHLVEFAYNNSYQATIGMAPFEALYGRCCRSPVCWDEVGEQRLIGPELVQSTNEAIQ 180
            DSHLHL+EFAYNNSYQATIGMAPFEALYGRCCRSPVCW EVGEQRL+GPELVQSTNEAIQ
Sbjct: 1222 DSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 1281

Query: 181  KIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFE 240
            KIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFE
Sbjct: 1282 KIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFE 1341

Query: 241  ILERIGPVAYRLALPPSLSAVHDVFHVSMLRK 273
            ILERIGPVAYRLALPPSLS VHDVFHVSMLRK
Sbjct: 1342 ILERIGPVAYRLALPPSLSTVHDVFHVSMLRK 1373

[Close]

BLAST of Cmc05g0132001 vs. ExPASy TrEMBL
Match: Q84KB0 (Pol protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 550.4 bits (1417), Expect = 4.2e-153
Identity = 267/272 (98.16%), Postives = 270/272 (99.26%), Query Frame = 0


Query: 1   MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 60
           MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI
Sbjct: 577 MDFITGLPRTLRGFTVIWVVVDRLTKSAHFVPGKSTYTASKWAQLYMSEIVRLHGVPVSI 636

Query: 61  VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 120
           VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW
Sbjct: 637 VSDRDARFTSKFWKGLQTAMGTRLDFSTAFHPQTDGQTERLNQVLEDMLRACALEFPGSW 696

Query: 121 DSHLHLVEFAYNNSYQATIGMAPFEALYGRCCRSPVCWDEVGEQRLIGPELVQSTNEAIQ 180
           DSHLHL+EFAYNNSYQATIGMAPFEALYGRCCRSPVCW EVGEQRL+GPELVQSTNEAIQ
Sbjct: 697 DSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRLMGPELVQSTNEAIQ 756

Query: 181 KIRSRMHTAQSRQKSYADVRRKDLEFEIGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFE 240
           KIRSRMHTAQSRQKSYADVRRKDLEFE+GDKVFLKVAPMKGVLRFERRGKLSPRFVGPFE
Sbjct: 757 KIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFERRGKLSPRFVGPFE 816

Query: 241 ILERIGPVAYRLALPPSLSAVHDVFHVSMLRK 273
           ILERIGPVAYRLALPPSLS VHDVFHVSMLRK
Sbjct: 817 ILERIGPVAYRLALPPSLSTVHDVFHVSMLRK 848

The following BLAST results are available for this feature:

BLAST of Cmc05g0132001 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041424.1	1.7e-153	97.79	pol protein [Cucumis melo var. makuwa]	[more]
KAA0043401.1	3.0e-153	98.53	pol protein [Cucumis melo var. makuwa]	[more]
KAA0064005.1	6.6e-153	98.53	pol protein [Cucumis melo var. makuwa]	[more]
KAA0051368.1	6.6e-153	98.53	pol protein [Cucumis melo var. makuwa]	[more]
AAO45752.1	8.6e-153	98.16	pol protein [Cucumis melo subsp. melo]	[more]

BLAST of Cmc05g0132001 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9UR07	3.0e-39	35.27	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	3.0e-39	35.27	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	3.0e-39	35.27	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	3.0e-39	35.27	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	3.0e-39	35.27	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc05g0132001 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TDB5	8.4e-154	97.79	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41502G00010 ...	[more]
A0A5A7TPA9	1.4e-153	98.53	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold18932G00010 ...	[more]
A0A5A7VDP3	3.2e-153	98.53	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1536G00010 P...	[more]
A0A5A7U7V9	3.2e-153	98.53	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55...	[more]
Q84KB0	4.2e-153	98.16	Pol protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1	[more]

BLAST of Cmc05g0132001 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..193 e-value: 2.1E-44 score: 153.2
None	No IPR available	PANTHER	PTHR45835	YALI0A06105P	coord: 1..156
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..151 score: 18.485718
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 1..148

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc05g0132001.1	Cmc05g0132001.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
cellular_component	GO:0043227	membrane-bounded organelle
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding