Cmc05g0131081 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc05g0131081
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr05: 10082255 .. 10082828 (+)
RNA-Seq Expression	Cmc05g0131081
Synteny	Cmc05g0131081

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGCTTGTGTATTGACTACAGAGAGTTGAATAAGATAACTATTAAGAACAAATACCCTTTGTCGAGGATTGATGATCTGTCTGACCAGTTGCAGGGAGCCACAGTGTTCTCTAAGATCGATCTTCGATTAGGATACCATCAGTTGAGGATTAAGGATAGTGATATACCAAAGACAACTTTTCGTTCGAGATATGGGCATTATGAGTTCATTGTGATGTCCTTTGGATTGACGAATGCTCCAACAGTGTTTATGGATTTGATGAACAGAGTGTTTAAGGATTTCTTACACTTTTGTGATTGTATTCATTGATGATATCTTGGTGTATTCCAACACAAAGGCAGAGCATGAGGAGCATTTGAGTATTGTTTTAGAGACCCTTCGAGCAGATAAATTATATGCAAAGTTTTCAAAATGTGAGTTTTGGCTTAAACGAGTTTCCTTTCTAGGTCGTGTGGTTTCTGAGGATGGTGTTTCTGTGGATCCTGTTAAGATAGAAGTTATTACTAGTTGGCCTCGACCTTCCACAGTTAGTGAAGATCGTAAGTTTTTGGGTTTAATAGGCTATTACTGA

mRNA sequence

ATGTGCTTGTGTATTGACTACAGAGAGTTGAATAAGATAACTATTAAGAACAAATACCCTTTGTCGAGGATTGATGATCTGTCTGACCAGTTGCAGGGAGCCACAGTGTTCTCTAAGATCGATCTTCGATTAGGATACCATCAGTTGAGGATTAAGGATAGTGATATACCAAAGACAACTTTTCGTTCGAGATATGGGCATTATGAGTTCATTGTGATGTCCTTTGGATTGACGAATGCTCCAACAGTGTTTATGGATTTGATGAACAGAGCAGAGCATGAGGAGCATTTGAGTATTGTTTTAGAGACCCTTCGAGCAGATAAATTATATGCAAAGTTTTCAAAATGTGAGTTTTGGCTTAAACGAGTTTCCTTTCTAGGTCGTGTGGTTTCTGAGGATGGTGTTTCTGTGGATCCTGTTAAGATAGAAGTTATTACTAGTTGGCCTCGACCTTCCACAGTTAGTGAAGATCGTAAGTTTTTGGGTTTAATAGGCTATTACTGA

Coding sequence (CDS)

ATGTGCTTGTGTATTGACTACAGAGAGTTGAATAAGATAACTATTAAGAACAAATACCCTTTGTCGAGGATTGATGATCTGTCTGACCAGTTGCAGGGAGCCACAGTGTTCTCTAAGATCGATCTTCGATTAGGATACCATCAGTTGAGGATTAAGGATAGTGATATACCAAAGACAACTTTTCGTTCGAGATATGGGCATTATGAGTTCATTGTGATGTCCTTTGGATTGACGAATGCTCCAACAGTGTTTATGGATTTGATGAACAGAGCAGAGCATGAGGAGCATTTGAGTATTGTTTTAGAGACCCTTCGAGCAGATAAATTATATGCAAAGTTTTCAAAATGTGAGTTTTGGCTTAAACGAGTTTCCTTTCTAGGTCGTGTGGTTTCTGAGGATGGTGTTTCTGTGGATCCTGTTAAGATAGAAGTTATTACTAGTTGGCCTCGACCTTCCACAGTTAGTGAAGATCGTAAGTTTTTGGGTTTAATAGGCTATTACTGA

Protein sequence

MCLCIDYRELNKITIKNKYPLSRIDDLSDQLQGATVFSKIDLRLGYHQLRIKDSDIPKTTFRSRYGHYEFIVMSFGLTNAPTVFMDLMNRAEHEEHLSIVLETLRADKLYAKFSKCEFWLKRVSFLGRVVSEDGVSVDPVKIEVITSWPRPSTVSEDRKFLGLIGYY

Homology

[Close]

BLAST of Cmc05g0131081 vs. NCBI nr
Match: KAA0040409.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 297.4 bits (760), Expect = 7.9e-77
Identity = 139/167 (83.23%), Postives = 151/167 (90.42%), Query Frame = 0


Query: 1   MCLCIDYRELNKITIKNKYPLSRIDDLSDQLQGATVFSKIDLRLGYHQLRIKDSDIPKTT 60
           M LCIDYRELNK+T+KN+YPL RIDDL DQLQGATVFSKIDLR GYHQLRI+D DIPKT 
Sbjct: 116 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 175

Query: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRAEHEEHLSIVLETLRADKLYAKFSKCEFWL 120
           FRSRYGHYEF+VMSFGLTNAP VFMDLMNRAEHEEHL  VLETLRA+KLYAKFSKCEFWL
Sbjct: 176 FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRAEHEEHLHQVLETLRANKLYAKFSKCEFWL 235

Query: 121 KRVSFLGRVVSEDGVSVDPVKIEVITSWPRPSTVSEDRKFLGLIGYY 168
           ++V+FLG VVS +GVSVDP KIE +T+WPRPSTVSE R FLGL GYY
Sbjct: 236 RKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYY 282

[Close]

BLAST of Cmc05g0131081 vs. NCBI nr
Match: KAA0067877.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 290.4 bits (742), Expect = 9.7e-75
Identity = 139/169 (82.25%), Postives = 151/169 (89.35%), Query Frame = 0


Query: 1   MCLCIDYRELNKITIKNKYPLSRIDDLSDQLQGATVFSKIDLRLGYHQLRIKDSDIPKTT 60
           M LCIDYRELNK+T+KN+YPL RIDDL DQLQGATVFSKIDLR GYHQLRIKD D+PKT 
Sbjct: 759 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 818

Query: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNR--AEHEEHLSIVLETLRADKLYAKFSKCEF 120
           FRSRYGHYEFIVMSFGLTNAPTVFMDLMNR  AEHE+HL +VL+TLR +KLYAKFSKCEF
Sbjct: 819 FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRTEAEHEKHLRMVLQTLRDNKLYAKFSKCEF 878

Query: 121 WLKRVSFLGRVVSEDGVSVDPVKIEVITSWPRPSTVSEDRKFLGLIGYY 168
           WLK+VSFLG VVS+ GVSVDP KIE +TSW RPST+SE R FLGL GYY
Sbjct: 879 WLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTISEVRSFLGLAGYY 927

[Close]

BLAST of Cmc05g0131081 vs. NCBI nr
Match: KAA0054634.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 290.4 bits (742), Expect = 9.7e-75
Identity = 141/191 (73.82%), Postives = 153/191 (80.10%), Query Frame = 0


Query: 1   MCLCIDYRELNKITIKNKYPLSRIDDLSDQLQGATVFSKIDLRLGYHQLRIKDSDIPKTT 60
           MCLCIDYRELNK+T+KN+YPL RIDDL DQLQGATVFSKIDLR GYHQLRI+D DIPKTT
Sbjct: 610 MCLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTT 669

Query: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNR------------------------AEHEEH 120
           FRSRYGHYEF+VMSFGLTNAP VFMDLMNR                        AEHEEH
Sbjct: 670 FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 729

Query: 121 LSIVLETLRADKLYAKFSKCEFWLKRVSFLGRVVSEDGVSVDPVKIEVITSWPRPSTVSE 168
           L  VLETLRA+KLYAKFSKCEFWL++V+FLG VVS +GVSVDP KIE +T+WPRPSTVSE
Sbjct: 730 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 789

[Close]

BLAST of Cmc05g0131081 vs. NCBI nr
Match: KAA0052401.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 287.7 bits (735), Expect = 6.3e-74
Identity = 142/191 (74.35%), Postives = 153/191 (80.10%), Query Frame = 0


Query: 1   MCLCIDYRELNKITIKNKYPLSRIDDLSDQLQGATVFSKIDLRLGYHQLRIKDSDIPKTT 60
           M LCIDYRELNK+T+KN+YPL RIDDL DQLQGATVFSKIDLR GYHQLRI+DSDIPKT 
Sbjct: 1   MHLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 60

Query: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNR------------------------AEHEEH 120
           FRSRYGHYEFIVMSFGLTNAPTVFMDLMNR                        AEHEEH
Sbjct: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 120

Query: 121 LSIVLETLRADKLYAKFSKCEFWLKRVSFLGRVVSEDGVSVDPVKIEVITSWPRPSTVSE 168
           L  VLETLRA+KLYAKFSKCEFWLK+V+FLG VVS +GVSVDP KIE +T+WPRPSTVSE
Sbjct: 121 LHQVLETLRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKIETVTNWPRPSTVSE 180

[Close]

BLAST of Cmc05g0131081 vs. NCBI nr
Match: TYK19227.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 287.7 bits (735), Expect = 6.3e-74
Identity = 142/191 (74.35%), Postives = 153/191 (80.10%), Query Frame = 0


Query: 1   MCLCIDYRELNKITIKNKYPLSRIDDLSDQLQGATVFSKIDLRLGYHQLRIKDSDIPKTT 60
           M LCIDYRELNK+T+KN+YPL RIDDL DQLQGATVFSKIDLR GYHQLRI+DSDIPKT 
Sbjct: 1   MHLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 60

Query: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNR------------------------AEHEEH 120
           FRSRYGHYEFIVMSFGLTNAPTVFMDLMNR                        AEHEEH
Sbjct: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 120

Query: 121 LSIVLETLRADKLYAKFSKCEFWLKRVSFLGRVVSEDGVSVDPVKIEVITSWPRPSTVSE 168
           L  VLETLRA+KLYAKFSKCEFWLK+V+FLG VVS +GVSVDP KIE +T+WPRPSTVSE
Sbjct: 121 LHQVLETLRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKIETVTNWPRPSTVSE 180

[Close]

BLAST of Cmc05g0131081 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 2.8e-32
Identity = 69/187 (36.90%), Postives = 100/187 (53.48%), Query Frame = 0


Query: 5   IDYRELNKITIKNKYPLSRIDDLSDQLQGATVFSKIDLRLGYHQLRIKDSDIPKTTFRSR 64
           IDYR+LN+ITI ++YP+  +D++  +L     F+ IDL  G+HQ+ + +  I KT F ++
Sbjct: 265 IDYRKLNEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTK 324

Query: 65  YGHYEFIVMSFGLTNAPTVFMDLMNR------------------------AEHEEHLSIV 124
            GHYE++ M FGL NAP  F   MN                          EH   + +V
Sbjct: 325 SGHYEYLRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLV 384

Query: 125 LETLRADKLYAKFSKCEFWLKRVSFLGRVVSEDGVSVDPVKIEVITSWPRPSTVSEDRKF 168
              L    L  +  KCEF  K  +FLG +V+ DG+  +P+K++ I S+P P+   E R F
Sbjct: 385 FTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAF 444

[Close]

BLAST of Cmc05g0131081 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 4.0e-31
Identity = 67/189 (35.45%), Postives = 101/189 (53.44%), Query Frame = 0


Query: 3   LCIDYRELNKITIKNKYPLSRIDDLSDQLQGATVFSKIDLRLGYHQLRIKDSDIPKTTFR 62
           + IDYR+LN+IT+ +++P+  +D++  +L     F+ IDL  G+HQ+ +    + KT F 
Sbjct: 264 IVIDYRKLNEITVGDRHPIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFS 323

Query: 63  SRYGHYEFIVMSFGLTNAPTVFMDLMNRA------------------------EHEEHLS 122
           +++GHYE++ M FGL NAP  F   MN                          EH + L 
Sbjct: 324 TKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLG 383

Query: 123 IVLETLRADKLYAKFSKCEFWLKRVSFLGRVVSEDGVSVDPVKIEVITSWPRPSTVSEDR 168
           +V E L    L  +  KCEF  +  +FLG V++ DG+  +P KIE I  +P P+   E +
Sbjct: 384 LVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIK 443

[Close]

BLAST of Cmc05g0131081 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 130.6 bits (327), Expect = 1.7e-29
Identity = 69/187 (36.90%), Postives = 98/187 (52.41%), Query Frame = 0


Query: 3   LCIDYRELNKITIKNKYPLSRIDDLSDQLQGATVFSKIDLRLGYHQLRIKDSDIPKTTFR 62
           LC+DYR LNK TI + +PL RID+L  ++  A +F+ +DL  GYHQ+ ++  D  KT F 
Sbjct: 648 LCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFV 707

Query: 63  SRYGHYEFIVMSFGLTNAPTVFMDLM----------------------NRAEHEEHLSIV 122
           +  G YE+ VM FGL NAP+ F   M                      +  EH +HL  V
Sbjct: 708 TPSGKYEYTVMPFGLVNAPSTFARYMADTFRDLRFVNVYLDDILIFSESPEEHWKHLDTV 767

Query: 123 LETLRADKLYAKFSKCEFWLKRVSFLGRVVSEDGVSVDPVKIEVITSWPRPSTVSEDRKF 168
           LE L+ + L  K  KC+F  +   FLG  +    ++    K   I  +P P TV + ++F
Sbjct: 768 LERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRF 827

[Close]

BLAST of Cmc05g0131081 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 130.6 bits (327), Expect = 1.7e-29
Identity = 69/187 (36.90%), Postives = 98/187 (52.41%), Query Frame = 0


Query: 3   LCIDYRELNKITIKNKYPLSRIDDLSDQLQGATVFSKIDLRLGYHQLRIKDSDIPKTTFR 62
           LC+DYR LNK TI + +PL RID+L  ++  A +F+ +DL  GYHQ+ ++  D  KT F 
Sbjct: 674 LCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFV 733

Query: 63  SRYGHYEFIVMSFGLTNAPTVFMDLM----------------------NRAEHEEHLSIV 122
           +  G YE+ VM FGL NAP+ F   M                      +  EH +HL  V
Sbjct: 734 TPSGKYEYTVMPFGLVNAPSTFARYMADTFRDLRFVNVYLDDILIFSESPEEHWKHLDTV 793

Query: 123 LETLRADKLYAKFSKCEFWLKRVSFLGRVVSEDGVSVDPVKIEVITSWPRPSTVSEDRKF 168
           LE L+ + L  K  KC+F  +   FLG  +    ++    K   I  +P P TV + ++F
Sbjct: 794 LERLKNENLIVKKKKCKFASEETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRF 853

[Close]

BLAST of Cmc05g0131081 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.4e-28
Identity = 63/189 (33.33%), Postives = 99/189 (52.38%), Query Frame = 0


Query: 3   LCIDYRELNKITIKNKYPLSRIDDLSDQLQGATVFSKIDLRLGYHQLRIKDSDIPKTTFR 62
           + +D++ LN +TI + YP+  I+     L  A  F+ +DL  G+HQ+ +K+SDIPKT F 
Sbjct: 180 MVVDFKRLNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFS 239

Query: 63  SRYGHYEFIVMSFGLTNAPTVFMDLMNRA------------------------EHEEHLS 122
           +  G YEF+ + FGL NAP +F  +++                           H ++L 
Sbjct: 240 TLNGKYEFLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLR 299

Query: 123 IVLETLRADKLYAKFSKCEFWLKRVSFLGRVVSEDGVSVDPVKIEVITSWPRPSTVSEDR 168
           +VL +L    L     K  F   +V FLG +V+ DG+  DP K+  I+  P P++V E +
Sbjct: 300 LVLASLSKANLQVNLEKSHFLDTQVEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELK 359

[Close]

BLAST of Cmc05g0131081 vs. ExPASy TrEMBL
Match: A0A5A7TGL7 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00240 PE=4 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 3.8e-77
Identity = 139/167 (83.23%), Postives = 151/167 (90.42%), Query Frame = 0


Query: 1   MCLCIDYRELNKITIKNKYPLSRIDDLSDQLQGATVFSKIDLRLGYHQLRIKDSDIPKTT 60
           M LCIDYRELNK+T+KN+YPL RIDDL DQLQGATVFSKIDLR GYHQLRI+D DIPKT 
Sbjct: 116 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTA 175

Query: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRAEHEEHLSIVLETLRADKLYAKFSKCEFWL 120
           FRSRYGHYEF+VMSFGLTNAP VFMDLMNRAEHEEHL  VLETLRA+KLYAKFSKCEFWL
Sbjct: 176 FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRAEHEEHLHQVLETLRANKLYAKFSKCEFWL 235

Query: 121 KRVSFLGRVVSEDGVSVDPVKIEVITSWPRPSTVSEDRKFLGLIGYY 168
           ++V+FLG VVS +GVSVDP KIE +T+WPRPSTVSE R FLGL GYY
Sbjct: 236 RKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYY 282

[Close]

BLAST of Cmc05g0131081 vs. ExPASy TrEMBL
Match: A0A5A7VKY9 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G00310 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.7e-75
Identity = 139/169 (82.25%), Postives = 151/169 (89.35%), Query Frame = 0


Query: 1   MCLCIDYRELNKITIKNKYPLSRIDDLSDQLQGATVFSKIDLRLGYHQLRIKDSDIPKTT 60
           M LCIDYRELNK+T+KN+YPL RIDDL DQLQGATVFSKIDLR GYHQLRIKD D+PKT 
Sbjct: 759 MRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIKDGDVPKTA 818

Query: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNR--AEHEEHLSIVLETLRADKLYAKFSKCEF 120
           FRSRYGHYEFIVMSFGLTNAPTVFMDLMNR  AEHE+HL +VL+TLR +KLYAKFSKCEF
Sbjct: 819 FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRTEAEHEKHLRMVLQTLRDNKLYAKFSKCEF 878

Query: 121 WLKRVSFLGRVVSEDGVSVDPVKIEVITSWPRPSTVSEDRKFLGLIGYY 168
           WLK+VSFLG VVS+ GVSVDP KIE +TSW RPST+SE R FLGL GYY
Sbjct: 879 WLKQVSFLGHVVSKAGVSVDPAKIEAVTSWTRPSTISEVRSFLGLAGYY 927

[Close]

BLAST of Cmc05g0131081 vs. ExPASy TrEMBL
Match: A0A5A7UHL7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G004390 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.7e-75
Identity = 141/191 (73.82%), Postives = 153/191 (80.10%), Query Frame = 0


Query: 1   MCLCIDYRELNKITIKNKYPLSRIDDLSDQLQGATVFSKIDLRLGYHQLRIKDSDIPKTT 60
           MCLCIDYRELNK+T+KN+YPL RIDDL DQLQGATVFSKIDLR GYHQLRI+D DIPKTT
Sbjct: 610 MCLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTT 669

Query: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNR------------------------AEHEEH 120
           FRSRYGHYEF+VMSFGLTNAP VFMDLMNR                        AEHEEH
Sbjct: 670 FRSRYGHYEFVVMSFGLTNAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 729

Query: 121 LSIVLETLRADKLYAKFSKCEFWLKRVSFLGRVVSEDGVSVDPVKIEVITSWPRPSTVSE 168
           L  VLETLRA+KLYAKFSKCEFWL++V+FLG VVS +GVSVDP KIE +T+WPRPSTVSE
Sbjct: 730 LHQVLETLRANKLYAKFSKCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSE 789

[Close]

BLAST of Cmc05g0131081 vs. ExPASy TrEMBL
Match: A0A5A7UFV0 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1994G00240 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 3.0e-74
Identity = 142/191 (74.35%), Postives = 153/191 (80.10%), Query Frame = 0


Query: 1   MCLCIDYRELNKITIKNKYPLSRIDDLSDQLQGATVFSKIDLRLGYHQLRIKDSDIPKTT 60
           M LCIDYRELNK+T+KN+YPL RIDDL DQLQGATVFSKIDLR GYHQLRI+DSDIPKT 
Sbjct: 1   MHLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 60

Query: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNR------------------------AEHEEH 120
           FRSRYGHYEFIVMSFGLTNAPTVFMDLMNR                        AEHEEH
Sbjct: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 120

Query: 121 LSIVLETLRADKLYAKFSKCEFWLKRVSFLGRVVSEDGVSVDPVKIEVITSWPRPSTVSE 168
           L  VLETLRA+KLYAKFSKCEFWLK+V+FLG VVS +GVSVDP KIE +T+WPRPSTVSE
Sbjct: 121 LHQVLETLRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKIETVTNWPRPSTVSE 180

[Close]

BLAST of Cmc05g0131081 vs. ExPASy TrEMBL
Match: A0A5D3D6P2 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1493G00250 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 3.0e-74
Identity = 142/191 (74.35%), Postives = 153/191 (80.10%), Query Frame = 0


Query: 1   MCLCIDYRELNKITIKNKYPLSRIDDLSDQLQGATVFSKIDLRLGYHQLRIKDSDIPKTT 60
           M LCIDYRELNK+T+KN+YPL RIDDL DQLQGATVFSKIDLR GYHQLRI+DSDIPKT 
Sbjct: 1   MHLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTA 60

Query: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNR------------------------AEHEEH 120
           FRSRYGHYEFIVMSFGLTNAPTVFMDLMNR                        AEHEEH
Sbjct: 61  FRSRYGHYEFIVMSFGLTNAPTVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEH 120

Query: 121 LSIVLETLRADKLYAKFSKCEFWLKRVSFLGRVVSEDGVSVDPVKIEVITSWPRPSTVSE 168
           L  VLETLRA+KLYAKFSKCEFWLK+V+FLG VVS +GVSVDP KIE +T+WPRPSTVSE
Sbjct: 121 LHQVLETLRANKLYAKFSKCEFWLKKVTFLGHVVSSEGVSVDPAKIETVTNWPRPSTVSE 180

[Close]

BLAST of Cmc05g0131081 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-12
Identity = 31/74 (41.89%), Postives = 44/74 (59.46%), Query Frame = 0


Query: 96  HLSIVLETLRADKLYAKFSKCEFWLKRVSFLG--RVVSEDGVSVDPVKIEVITSWPRPST 155
           HL +VL+     + YA   KC F   ++++LG   ++S +GVS DP K+E +  WP P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 156 VSEDRKFLGLIGYY 168
            +E R FLGL GYY
Sbjct: 63  TTELRGFLGLTGYY 76

The following BLAST results are available for this feature:

BLAST of Cmc05g0131081 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0040409.1	7.9e-77	83.23	pol protein [Cucumis melo var. makuwa]	[more]
KAA0067877.1	9.7e-75	82.25	pol protein [Cucumis melo var. makuwa]	[more]
KAA0054634.1	9.7e-75	73.82	pol protein [Cucumis melo var. makuwa]	[more]
KAA0052401.1	6.3e-74	74.35	pol protein [Cucumis melo var. makuwa]	[more]
TYK19227.1	6.3e-74	74.35	pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc05g0131081 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	2.8e-32	36.90	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	4.0e-31	35.45	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q99315	1.7e-29	36.90	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	1.7e-29	36.90	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q8I7P9	5.4e-28	33.33	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]

BLAST of Cmc05g0131081 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TGL7	3.8e-77	83.23	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold35G00240 PE=...	[more]
A0A5A7VKY9	4.7e-75	82.25	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]
A0A5A7UHL7	4.7e-75	73.82	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24...	[more]
A0A5A7UFV0	3.0e-74	74.35	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1994G00240 P...	[more]
A0A5D3D6P2	3.0e-74	74.35	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1493G00250 P...	[more]

BLAST of Cmc05g0131081 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	1.9e-12	41.89	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 3..79 e-value: 9.5E-36 score: 125.1
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 4..167
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 4..167
None	No IPR available	CDD	cd01647	RT_LTR	coord: 3..130 e-value: 1.32523E-55 score: 171.239
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 91..136 e-value: 6.9E-11 score: 44.0
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 19..90 e-value: 9.5E-36 score: 125.1
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 2..93 e-value: 5.2E-8 score: 32.7
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 3..167

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc05g0131081.1	Cmc05g0131081.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding