Cmc05g0131011 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc05g0131011
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	FKBP-type peptidyl-prolyl cis-trans isomerase family protein
Location	CMiso1.1chr05: 10013267 .. 10013434 (-)
RNA-Seq Expression	Cmc05g0131011
Synteny	Cmc05g0131011

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAACCCTTCTTGATGGCACTCAATTCGATTCGAGCCATGATCAAGGAACATCTTTCAAGTTCAAGCTCGTGGAAGGTAATTTCGTTTGTAATTTGATGTTATCTGATGATTGTAAATGTATCGTAATTTTCTTTCTACGTCACAATCATGTGTTGGAGTATTAG

mRNA sequence

ATGGGAACCCTTCTTGATGGCACTCAATTCGATTCGAGCCATGATCAAGGAACATCTTTCAAGTTCAAGCTCGTGGAAGGTAATTTCGTTTGTAATTTGATGTTATCTGATGATTGTAAATGTATCGTAATTTTCTTTCTACGTCACAATCATGTGTTGGAGTATTAG

Coding sequence (CDS)

ATGGGAACCCTTCTTGATGGCACTCAATTCGATTCGAGCCATGATCAAGGAACATCTTTCAAGTTCAAGCTCGTGGAAGGTAATTTCGTTTGTAATTTGATGTTATCTGATGATTGTAAATGTATCGTAATTTTCTTTCTACGTCACAATCATGTGTTGGAGTATTAG

Protein sequence

MGTLLDGTQFDSSHDQGTSFKFKLVEGNFVCNLMLSDDCKCIVIFFLRHNHVLEY

Homology

[Close]

BLAST of Cmc05g0131011 vs. NCBI nr
Match: KAA0039655.1 (70 kDa peptidyl-prolyl isomerase-like [Cucumis melo var. makuwa] >TYJ95539.1 70 kDa peptidyl-prolyl isomerase-like [Cucumis melo var. makuwa])

HSP 1 Score: 57.0 bits (136), Expect = 6.0e-05
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 0


Query: 1  MGTLLDGTQFDSSHDQGTSFKFKLVE 27
          MGTLLDGTQFDSSHDQGTSFKFKLVE
Sbjct: 41 MGTLLDGTQFDSSHDQGTSFKFKLVE 66

[Close]

BLAST of Cmc05g0131011 vs. ExPASy Swiss-Prot
Match: Q9FJL3 (Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana OX=3702 GN=FKBP65 PE=1 SV=1)

HSP 1 Score: 44.3 bits (103), Expect = 5.2e-04
Identity = 19/29 (65.52%), Postives = 24/29 (82.76%), Query Frame = 0


Query: 2   GTLLDGTQFDSSHDQGTSFKFKLVEGNFV 31
           GTLLDGT+FDSS D+GT FKF L +G+ +
Sbjct: 74  GTLLDGTKFDSSRDRGTPFKFTLGQGHVI 102

[Close]

BLAST of Cmc05g0131011 vs. ExPASy TrEMBL
Match: A0A5D3B949 (Peptidylprolyl isomerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold767G00300 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.9e-05
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 0


Query: 1  MGTLLDGTQFDSSHDQGTSFKFKLVE 27
          MGTLLDGTQFDSSHDQGTSFKFKLVE
Sbjct: 41 MGTLLDGTQFDSSHDQGTSFKFKLVE 66

[Close]

BLAST of Cmc05g0131011 vs. TAIR 10
Match: AT5G48570.1 (FKBP-type peptidyl-prolyl cis-trans isomerase family protein )

HSP 1 Score: 44.3 bits (103), Expect = 3.7e-05
Identity = 19/29 (65.52%), Postives = 24/29 (82.76%), Query Frame = 0


Query: 2   GTLLDGTQFDSSHDQGTSFKFKLVEGNFV 31
           GTLLDGT+FDSS D+GT FKF L +G+ +
Sbjct: 74  GTLLDGTKFDSSRDRGTPFKFTLGQGHVI 102

[Close]

BLAST of Cmc05g0131011 vs. TAIR 10
Match: AT3G25230.1 (rotamase FKBP 1 )

HSP 1 Score: 41.6 bits (96), Expect = 2.4e-04
Identity = 18/29 (62.07%), Postives = 22/29 (75.86%), Query Frame = 0


Query: 2  GTLLDGTQFDSSHDQGTSFKFKLVEGNFV 31
          GTLLDGT+FDSS D+ T FKF L +G  +
Sbjct: 66 GTLLDGTKFDSSRDRATPFKFTLGQGQVI 94

[Close]

BLAST of Cmc05g0131011 vs. TAIR 10
Match: AT3G25230.2 (rotamase FKBP 1 )

HSP 1 Score: 41.6 bits (96), Expect = 2.4e-04
Identity = 18/29 (62.07%), Postives = 22/29 (75.86%), Query Frame = 0


Query: 2  GTLLDGTQFDSSHDQGTSFKFKLVEGNFV 31
          GTLLDGT+FDSS D+ T FKF L +G  +
Sbjct: 66 GTLLDGTKFDSSRDRATPFKFTLGQGQVI 94

The following BLAST results are available for this feature:

BLAST of Cmc05g0131011 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0039655.1	6.0e-05	100.00	70 kDa peptidyl-prolyl isomerase-like [Cucumis melo var. makuwa] >TYJ95539.1 70 ...	[more]

BLAST of Cmc05g0131011 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJL3	5.2e-04	65.52	Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana OX=3702 GN=FK...	[more]

BLAST of Cmc05g0131011 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3B949	2.9e-05	100.00	Peptidylprolyl isomerase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of Cmc05g0131011 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48570.1	3.7e-05	65.52	FKBP-type peptidyl-prolyl cis-trans isomerase family protein	[more]
AT3G25230.1	2.4e-04	62.07	rotamase FKBP 1	[more]
AT3G25230.2	2.4e-04	62.07	rotamase FKBP 1	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.50.40		coord: 1..40 e-value: 2.1E-5 score: 26.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc05g0131011.1	Cmc05g0131011.1	mRNA