Cmc05g0130321 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc05g0130321
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr05: 8739072 .. 8739620 (+)
RNA-Seq Expression	Cmc05g0130321
Synteny	Cmc05g0130321

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGTCAAGGCTCGGAAAGGATATAAATATTTCATTAGTTTCGTCGATGATTATTCGAGGTATGGTCATGTTTACCTAATTCAGAACAAGTCGGATTCTTTTGAAAAGTTCAAAGTATATGAGGCTAAATTAGAAAATGAATCAGGTAAAACAATAAAGACATTTCGTTCAGATCGAGGTGGAAAGTATATGGACTTGCGATTCCAAGACTATTTGATAGAATATGGAATCCAATCACAACTCTCTGCACCTAGTACGCCTCAGCAAAGCGGTGTATCAGAAAGAAGAAACCGAACTTTGTTAGACATGGTTCGCTCTATGATGAGTTTTGCTCAGTTGCCAGATTCTTTTTGGGGATATGCTTTAGAAACAGTTATCTATATTTTGAACAACGTTCCCTCTAAAAGTGTTTTTGAAATACCTTATGAGTTATGGAAAGGGCGTAAAGAAAATTTACGTCACTTAGGATTTGGGGATGTCCAGCACACGTGTTGGTGCAAAATTCTAAAAAGTTGGAACATCGTTCAAAATTATGCCTATTTGTAG

mRNA sequence

ATGAATGTCAAGGCTCGGAAAGGATATAAATATTTCATTAGTTTCGTCGATGATTATTCGAGGTATGGTCATGTTTACCTAATTCAGAACAAGTCGGATTCTTTTGAAAAGTTCAAAGTATATGAGGCTAAATTAGAAAATGAATCAGGTAAAACAATAAAGACATTTCGTTCAGATCGAGGTGGAAAGTATATGGACTTGCGATTCCAAGACTATTTGATAGAATATGGAATCCAATCACAACTCTCTGCACCTAGTACGCCTCAGCAAAGCGGTGTATCAGAAAGAAGAAACCGAACTTTGTTAGACATGGTTCGCTCTATGATGAGTTTTGCTCAGTTGCCAGATTCTTTTTGGGGATATGCTTTAGAAACAGTTATCTATATTTTGAACAACGTTCCCTCTAAAAGTGTTTTTGAAATACCTTATGAGTTATGGAAAGGGCGTAAAGAAAATTTACGTCACTTAGGATTTGGGGATGTCCAGCACACGTGTTGGTGCAAAATTCTAAAAAGTTGGAACATCGTTCAAAATTATGCCTATTTGTAG

Coding sequence (CDS)

ATGAATGTCAAGGCTCGGAAAGGATATAAATATTTCATTAGTTTCGTCGATGATTATTCGAGGTATGGTCATGTTTACCTAATTCAGAACAAGTCGGATTCTTTTGAAAAGTTCAAAGTATATGAGGCTAAATTAGAAAATGAATCAGGTAAAACAATAAAGACATTTCGTTCAGATCGAGGTGGAAAGTATATGGACTTGCGATTCCAAGACTATTTGATAGAATATGGAATCCAATCACAACTCTCTGCACCTAGTACGCCTCAGCAAAGCGGTGTATCAGAAAGAAGAAACCGAACTTTGTTAGACATGGTTCGCTCTATGATGAGTTTTGCTCAGTTGCCAGATTCTTTTTGGGGATATGCTTTAGAAACAGTTATCTATATTTTGAACAACGTTCCCTCTAAAAGTGTTTTTGAAATACCTTATGAGTTATGGAAAGGGCGTAAAGAAAATTTACGTCACTTAGGATTTGGGGATGTCCAGCACACGTGTTGGTGCAAAATTCTAAAAAGTTGGAACATCGTTCAAAATTATGCCTATTTGTAG

Protein sequence

MNVKARKGYKYFISFVDDYSRYGHVYLIQNKSDSFEKFKVYEAKLENESGKTIKTFRSDRGGKYMDLRFQDYLIEYGIQSQLSAPSTPQQSGVSERRNRTLLDMVRSMMSFAQLPDSFWGYALETVIYILNNVPSKSVFEIPYELWKGRKENLRHLGFGDVQHTCWCKILKSWNIVQNYAYL

Homology

[Close]

BLAST of Cmc05g0130321 vs. NCBI nr
Match: KAA0033336.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 328.6 bits (841), Expect = 3.5e-86
Identity = 159/164 (96.95%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MNVKARKGYKYFISFVDDYSRYGHVYLIQNKSDSFEKFKVYEAKLENESGKTIKTFRSDR 60
           MNVKARKGY+YFISFVDDYSRYGHVYLIQNKSDSFEKFKVYEAK+ENESGKTIKTFRSDR
Sbjct: 240 MNVKARKGYEYFISFVDDYSRYGHVYLIQNKSDSFEKFKVYEAKVENESGKTIKTFRSDR 299

Query: 61  GGKYMDLRFQDYLIEYGIQSQLSAPSTPQQSGVSERRNRTLLDMVRSMMSFAQLPDSFWG 120
           GG+YMDLRFQDYLIEYGIQSQLSAPSTPQQSGVSERRNRTLLDMVRSMMSFAQLPDSFWG
Sbjct: 300 GGEYMDLRFQDYLIEYGIQSQLSAPSTPQQSGVSERRNRTLLDMVRSMMSFAQLPDSFWG 359

Query: 121 YALETVIYILNNVPSKSVFEIPYELWKGRKENLRHLGFGDVQHT 165
           YALETVIYILNNVPSKSVFEIPYELWKGRK NLRHLGFGD+QHT
Sbjct: 360 YALETVIYILNNVPSKSVFEIPYELWKGRKGNLRHLGFGDIQHT 403

[Close]

BLAST of Cmc05g0130321 vs. NCBI nr
Match: TYK21571.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 328.6 bits (841), Expect = 3.5e-86
Identity = 159/164 (96.95%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MNVKARKGYKYFISFVDDYSRYGHVYLIQNKSDSFEKFKVYEAKLENESGKTIKTFRSDR 60
           MNVKARKGY+YFISFVDDYSRYGHVYLIQNKSDSFEKFKVYEAK+ENESGKTIKTFRSDR
Sbjct: 230 MNVKARKGYEYFISFVDDYSRYGHVYLIQNKSDSFEKFKVYEAKVENESGKTIKTFRSDR 289

Query: 61  GGKYMDLRFQDYLIEYGIQSQLSAPSTPQQSGVSERRNRTLLDMVRSMMSFAQLPDSFWG 120
           GG+YMDLRFQDYLIEYGIQSQLSAPSTPQQSGVSERRNRTLLDMVRSMMSFAQLPDSFWG
Sbjct: 290 GGEYMDLRFQDYLIEYGIQSQLSAPSTPQQSGVSERRNRTLLDMVRSMMSFAQLPDSFWG 349

Query: 121 YALETVIYILNNVPSKSVFEIPYELWKGRKENLRHLGFGDVQHT 165
           YALETVIYILNNVPSKSVFEIPYELWKGRK NLRHLGFGD+QHT
Sbjct: 350 YALETVIYILNNVPSKSVFEIPYELWKGRKGNLRHLGFGDIQHT 393

[Close]

BLAST of Cmc05g0130321 vs. NCBI nr
Match: KAA0033558.1 (gag/pol protein [Cucumis melo var. makuwa] >TYJ95629.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 271.6 bits (693), Expect = 5.1e-69
Identity = 130/155 (83.87%), Postives = 144/155 (92.90%), Query Frame = 0


Query: 1   MNVKARKGYKYFISFVDDYSRYGHVYLIQNKSDSFEKFKVYEAKLENESGKTIKTFRSDR 60
           MNVKA++GYKY ISF+DDYSRYGH+YLIQNKSDSFEKFK Y+A++ENESGKTIK  RSDR
Sbjct: 27  MNVKAQRGYKYLISFIDDYSRYGHIYLIQNKSDSFEKFKEYKAEVENESGKTIKILRSDR 86

Query: 61  GGKYMDLRFQDYLIEYGIQSQLSAPSTPQQSGVSERRNRTLLDMVRSMMSFAQLPDSFWG 120
           GG+YMDLRFQDYLIE+GIQSQL  P+TPQQ+GVSERRNRTLLDMVRS+MSFAQLP+SFW 
Sbjct: 87  GGEYMDLRFQDYLIEHGIQSQLFTPNTPQQNGVSERRNRTLLDMVRSIMSFAQLPNSFWV 146

Query: 121 YALETVIYILNNVPSKSVFEIPYELWKGRKENLRH 156
           YALET IYILNNVPSKSV EIPYELWKGRK +L H
Sbjct: 147 YALETTIYILNNVPSKSVSEIPYELWKGRKGSLHH 181

[Close]

BLAST of Cmc05g0130321 vs. NCBI nr
Match: TYK30724.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 271.2 bits (692), Expect = 6.6e-69
Identity = 131/155 (84.52%), Postives = 144/155 (92.90%), Query Frame = 0


Query: 1   MNVKARKGYKYFISFVDDYSRYGHVYLIQNKSDSFEKFKVYEAKLENESGKTIKTFRSDR 60
           MNVKA+ GY+YFISF+DDYSRYG++YLIQNKSDSFEKFK Y+A++ENESGKTIKT RSDR
Sbjct: 1   MNVKAQGGYEYFISFIDDYSRYGYIYLIQNKSDSFEKFKEYKAEVENESGKTIKTLRSDR 60

Query: 61  GGKYMDLRFQDYLIEYGIQSQLSAPSTPQQSGVSERRNRTLLDMVRSMMSFAQLPDSFWG 120
           G +YMDLRFQDYLIE+ IQSQLSAP+TPQQ+GVSERRNR LLDMVRSM SFAQLPDSFWG
Sbjct: 61  GEEYMDLRFQDYLIEHRIQSQLSAPNTPQQNGVSERRNRALLDMVRSMTSFAQLPDSFWG 120

Query: 121 YALETVIYILNNVPSKSVFEIPYELWKGRKENLRH 156
           YALET IYILNNVPSKSV E PYELWKGRK +LRH
Sbjct: 121 YALETTIYILNNVPSKSVSETPYELWKGRKGSLRH 155

[Close]

BLAST of Cmc05g0130321 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 270.0 bits (689), Expect = 1.5e-68
Identity = 128/155 (82.58%), Postives = 145/155 (93.55%), Query Frame = 0


Query: 1   MNVKARKGYKYFISFVDDYSRYGHVYLIQNKSDSFEKFKVYEAKLENESGKTIKTFRSDR 60
           MNVKAR GY+YFISF+DD+SRYGHVYL+ +KS+SFEKFK Y+A++ENE GKTIKT RSDR
Sbjct: 512 MNVKARGGYEYFISFIDDFSRYGHVYLLHHKSESFEKFKEYKAEVENEIGKTIKTLRSDR 571

Query: 61  GGKYMDLRFQDYLIEYGIQSQLSAPSTPQQSGVSERRNRTLLDMVRSMMSFAQLPDSFWG 120
           GG+YMD +FQDYLIE+GIQSQLSAPSTPQQ+GVSERRNRTLLDMVRSMMS+AQLPDSFWG
Sbjct: 572 GGEYMDSKFQDYLIEFGIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSYAQLPDSFWG 631

Query: 121 YALETVIYILNNVPSKSVFEIPYELWKGRKENLRH 156
           YALET I+ILNNVPSKSV E PYELWKGRK +LR+
Sbjct: 632 YALETAIHILNNVPSKSVLETPYELWKGRKSSLRY 666

[Close]

BLAST of Cmc05g0130321 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.1e-33
Identity = 65/157 (41.40%), Postives = 104/157 (66.24%), Query Frame = 0


Query: 1   MNVKARKGYKYFISFVDDYSRYGHVYLIQNKSDSFEKFKVYEAKLENESGKTIKTFRSDR 60
           M +++  G KYF++F+DD SR   VY+++ K   F+ F+ + A +E E+G+ +K  RSD 
Sbjct: 492 MEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKRLRSDN 551

Query: 61  GGKYMDLRFQDYLIEYGIQSQLSAPSTPQQSGVSERRNRTLLDMVRSMMSFAQLPDSFWG 120
           GG+Y    F++Y   +GI+ + + P TPQ +GV+ER NRT+++ VRSM+  A+LP SFWG
Sbjct: 552 GGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLPKSFWG 611

Query: 121 YALETVIYILNNVPSKSV-FEIPYELWKGRKENLRHL 157
            A++T  Y++N  PS  + FEIP  +W  ++ +  HL
Sbjct: 612 EAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHL 648

[Close]

BLAST of Cmc05g0130321 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 114.0 bits (284), Expect = 1.8e-24
Identity = 57/149 (38.26%), Postives = 88/149 (59.06%), Query Frame = 0


Query: 11  YFISFVDDYSRYGHVYLIQNKSDSFEKFKVYEAKLENESGKTIKTFRSDRGGKYMDLRFQ 70
           YF+ FVD ++ Y   YLI+ KSD F  F+ + AK E      +     D G +Y+    +
Sbjct: 502 YFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSEAHFNLKVVYLYIDNGREYLSNEMR 561

Query: 71  DYLIEYGIQSQLSAPSTPQQSGVSERRNRTLLDMVRSMMSFAQLPDSFWGYALETVIYIL 130
            + ++ GI   L+ P TPQ +GVSER  RT+ +  R+M+S A+L  SFWG A+ T  Y++
Sbjct: 562 QFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSGAKLDKSFWGEAVLTATYLI 621

Query: 131 NNVPSKSVFE---IPYELWKGRKENLRHL 157
           N +PS+++ +    PYE+W  +K  L+HL
Sbjct: 622 NRIPSRALVDSSKTPYEMWHNKKPYLKHL 650

[Close]

BLAST of Cmc05g0130321 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 7.0e-21
Identity = 49/149 (32.89%), Postives = 92/149 (61.74%), Query Frame = 0


Query: 9   YKYFISFVDDYSRYGHVYLIQNKSDSFEKFKVYEAKLENESGKTIKTFRSDRGGKYMDLR 68
           Y+Y++ FVD ++RY  +Y ++ KS   + F ++++ +EN     I T  SD GG+++ LR
Sbjct: 521 YRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGTLYSDNGGEFVVLR 580

Query: 69  FQDYLIEYGIQSQLSAPSTPQQSGVSERRNRTLLDMVRSMMSFAQLPDSFWGYALETVIY 128
             DYL ++GI    S P TP+ +G+SER++R +++M  +++S A +P ++W YA    +Y
Sbjct: 581 --DYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKTYWPYAFSVAVY 640

Query: 129 ILNNVPSKSV-FEIPYELWKGRKENLRHL 157
           ++N +P+  +  + P++   G+  N   L
Sbjct: 641 LINRLPTPLLQLQSPFQKLFGQPPNYEKL 667

[Close]

BLAST of Cmc05g0130321 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-19
Identity = 48/151 (31.79%), Postives = 88/151 (58.28%), Query Frame = 0


Query: 3   VKARKGYKYFISFVDDYSRYGHVYLIQNKSDSFEKFKVYEAKLENESGKTIKTFRSDRGG 62
           + +   Y+Y++ FVD ++RY  +Y ++ KS   E F  ++  LEN     I TF SD GG
Sbjct: 536 ILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGTFYSDNGG 595

Query: 63  KYMDLRFQDYLIEYGIQSQLSAPSTPQQSGVSERRNRTLLDMVRSMMSFAQLPDSFWGYA 122
           +++ L   +Y  ++GI    S P TP+ +G+SER++R +++   +++S A +P ++W YA
Sbjct: 596 EFVAL--WEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKTYWPYA 655

Query: 123 LETVIYILNNVPSKSV-FEIPYELWKGRKEN 153
               +Y++N +P+  +  E P++   G   N
Sbjct: 656 FAVAVYLINRLPTPLLQLESPFQKLFGTSPN 684

[Close]

BLAST of Cmc05g0130321 vs. ExPASy Swiss-Prot
Match: Q07163 (Transposon TyH3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae OX=4932 GN=TY1B PE=1 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 4.7e-09
Identity = 36/127 (28.35%), Postives = 67/127 (52.76%), Query Frame = 0


Query: 11  YFISFVDDYSRYGHVYLIQNKSDS--FEKFKVYEAKLENESGKTIKTFRSDRGGKYMDLR 70
           YFISF D+ +++  VY + ++ +    + F    A ++N+   ++   + DRG +Y +  
Sbjct: 686 YFISFTDETTKFRWVYPLHDRREDSILDVFTTILAFIKNQFQASVLVIQMDRGSEYTNRT 745

Query: 71  FQDYLIEYGIQSQLSAPSTPQQSGVSERRNRTLLDMVRSMMSFAQLPDSFWGYALETVIY 130
              +L + GI    +  +  +  GV+ER NRTLLD  R+ +  + LP+  W  A+E    
Sbjct: 746 LHKFLEKNGITPCYTTTADSRAHGVAERLNRTLLDDCRTQLQCSGLPNHLWFSAIEFSTI 805

Query: 131 ILNNVPS 136
           + N++ S
Sbjct: 806 VRNSLAS 812

[Close]

BLAST of Cmc05g0130321 vs. ExPASy TrEMBL
Match: A0A5D3DD25 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G00700 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 1.7e-86
Identity = 159/164 (96.95%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MNVKARKGYKYFISFVDDYSRYGHVYLIQNKSDSFEKFKVYEAKLENESGKTIKTFRSDR 60
           MNVKARKGY+YFISFVDDYSRYGHVYLIQNKSDSFEKFKVYEAK+ENESGKTIKTFRSDR
Sbjct: 230 MNVKARKGYEYFISFVDDYSRYGHVYLIQNKSDSFEKFKVYEAKVENESGKTIKTFRSDR 289

Query: 61  GGKYMDLRFQDYLIEYGIQSQLSAPSTPQQSGVSERRNRTLLDMVRSMMSFAQLPDSFWG 120
           GG+YMDLRFQDYLIEYGIQSQLSAPSTPQQSGVSERRNRTLLDMVRSMMSFAQLPDSFWG
Sbjct: 290 GGEYMDLRFQDYLIEYGIQSQLSAPSTPQQSGVSERRNRTLLDMVRSMMSFAQLPDSFWG 349

Query: 121 YALETVIYILNNVPSKSVFEIPYELWKGRKENLRHLGFGDVQHT 165
           YALETVIYILNNVPSKSVFEIPYELWKGRK NLRHLGFGD+QHT
Sbjct: 350 YALETVIYILNNVPSKSVFEIPYELWKGRKGNLRHLGFGDIQHT 393

[Close]

BLAST of Cmc05g0130321 vs. ExPASy TrEMBL
Match: A0A5A7STL2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G001550 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 1.7e-86
Identity = 159/164 (96.95%), Postives = 163/164 (99.39%), Query Frame = 0


Query: 1   MNVKARKGYKYFISFVDDYSRYGHVYLIQNKSDSFEKFKVYEAKLENESGKTIKTFRSDR 60
           MNVKARKGY+YFISFVDDYSRYGHVYLIQNKSDSFEKFKVYEAK+ENESGKTIKTFRSDR
Sbjct: 240 MNVKARKGYEYFISFVDDYSRYGHVYLIQNKSDSFEKFKVYEAKVENESGKTIKTFRSDR 299

Query: 61  GGKYMDLRFQDYLIEYGIQSQLSAPSTPQQSGVSERRNRTLLDMVRSMMSFAQLPDSFWG 120
           GG+YMDLRFQDYLIEYGIQSQLSAPSTPQQSGVSERRNRTLLDMVRSMMSFAQLPDSFWG
Sbjct: 300 GGEYMDLRFQDYLIEYGIQSQLSAPSTPQQSGVSERRNRTLLDMVRSMMSFAQLPDSFWG 359

Query: 121 YALETVIYILNNVPSKSVFEIPYELWKGRKENLRHLGFGDVQHT 165
           YALETVIYILNNVPSKSVFEIPYELWKGRK NLRHLGFGD+QHT
Sbjct: 360 YALETVIYILNNVPSKSVFEIPYELWKGRKGNLRHLGFGDIQHT 403

[Close]

BLAST of Cmc05g0130321 vs. ExPASy TrEMBL
Match: A0A5D3B9E3 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00490 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.5e-69
Identity = 130/155 (83.87%), Postives = 144/155 (92.90%), Query Frame = 0


Query: 1   MNVKARKGYKYFISFVDDYSRYGHVYLIQNKSDSFEKFKVYEAKLENESGKTIKTFRSDR 60
           MNVKA++GYKY ISF+DDYSRYGH+YLIQNKSDSFEKFK Y+A++ENESGKTIK  RSDR
Sbjct: 27  MNVKAQRGYKYLISFIDDYSRYGHIYLIQNKSDSFEKFKEYKAEVENESGKTIKILRSDR 86

Query: 61  GGKYMDLRFQDYLIEYGIQSQLSAPSTPQQSGVSERRNRTLLDMVRSMMSFAQLPDSFWG 120
           GG+YMDLRFQDYLIE+GIQSQL  P+TPQQ+GVSERRNRTLLDMVRS+MSFAQLP+SFW 
Sbjct: 87  GGEYMDLRFQDYLIEHGIQSQLFTPNTPQQNGVSERRNRTLLDMVRSIMSFAQLPNSFWV 146

Query: 121 YALETVIYILNNVPSKSVFEIPYELWKGRKENLRH 156
           YALET IYILNNVPSKSV EIPYELWKGRK +L H
Sbjct: 147 YALETTIYILNNVPSKSVSEIPYELWKGRKGSLHH 181

[Close]

BLAST of Cmc05g0130321 vs. ExPASy TrEMBL
Match: A0A5D3E496 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G00560 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 3.2e-69
Identity = 131/155 (84.52%), Postives = 144/155 (92.90%), Query Frame = 0


Query: 1   MNVKARKGYKYFISFVDDYSRYGHVYLIQNKSDSFEKFKVYEAKLENESGKTIKTFRSDR 60
           MNVKA+ GY+YFISF+DDYSRYG++YLIQNKSDSFEKFK Y+A++ENESGKTIKT RSDR
Sbjct: 1   MNVKAQGGYEYFISFIDDYSRYGYIYLIQNKSDSFEKFKEYKAEVENESGKTIKTLRSDR 60

Query: 61  GGKYMDLRFQDYLIEYGIQSQLSAPSTPQQSGVSERRNRTLLDMVRSMMSFAQLPDSFWG 120
           G +YMDLRFQDYLIE+ IQSQLSAP+TPQQ+GVSERRNR LLDMVRSM SFAQLPDSFWG
Sbjct: 61  GEEYMDLRFQDYLIEHRIQSQLSAPNTPQQNGVSERRNRALLDMVRSMTSFAQLPDSFWG 120

Query: 121 YALETVIYILNNVPSKSVFEIPYELWKGRKENLRH 156
           YALET IYILNNVPSKSV E PYELWKGRK +LRH
Sbjct: 121 YALETTIYILNNVPSKSVSETPYELWKGRKGSLRH 155

[Close]

BLAST of Cmc05g0130321 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 7.2e-69
Identity = 128/155 (82.58%), Postives = 145/155 (93.55%), Query Frame = 0


Query: 1   MNVKARKGYKYFISFVDDYSRYGHVYLIQNKSDSFEKFKVYEAKLENESGKTIKTFRSDR 60
           MNVKAR GY+YFISF+DD+SRYGHVYL+ +KS+SFEKFK Y+A++ENE GKTIKT RSDR
Sbjct: 512 MNVKARGGYEYFISFIDDFSRYGHVYLLHHKSESFEKFKEYKAEVENEIGKTIKTLRSDR 571

Query: 61  GGKYMDLRFQDYLIEYGIQSQLSAPSTPQQSGVSERRNRTLLDMVRSMMSFAQLPDSFWG 120
           GG+YMD +FQDYLIE+GIQSQLSAPSTPQQ+GVSERRNRTLLDMVRSMMS+AQLPDSFWG
Sbjct: 572 GGEYMDSKFQDYLIEFGIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSYAQLPDSFWG 631

Query: 121 YALETVIYILNNVPSKSVFEIPYELWKGRKENLRH 156
           YALET I+ILNNVPSKSV E PYELWKGRK +LR+
Sbjct: 632 YALETAIHILNNVPSKSVLETPYELWKGRKSSLRY 666

[Close]

BLAST of Cmc05g0130321 vs. TAIR 10
Match: ATMG00710.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 44.7 bits (104), Expect = 9.4e-05
Identity = 20/50 (40.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 98  NRTLLDMVRSMMSFAQLPDSFWGYALETVIYILNNVPSKSV-FEIPYELW 147
           NRT+++ VRSM+    LP +F   A  T ++I+N  PS ++ F +P E+W
Sbjct: 2   NRTIIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVW 51

The following BLAST results are available for this feature:

BLAST of Cmc05g0130321 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033336.1	3.5e-86	96.95	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK21571.1	3.5e-86	96.95	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0033558.1	5.1e-69	83.87	gag/pol protein [Cucumis melo var. makuwa] >TYJ95629.1 gag/pol protein [Cucumis ...	[more]
TYK30724.1	6.6e-69	84.52	gag/pol protein [Cucumis melo var. makuwa]	[more]
ADJ18449.1	1.5e-68	82.58	gag/pol protein, partial [Bryonia dioica]	[more]

BLAST of Cmc05g0130321 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	2.1e-33	41.40	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.8e-24	38.26	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	7.0e-21	32.89	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	1.3e-19	31.79	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q07163	4.7e-09	28.35	Transposon TyH3 Gag-Pol polyprotein OS=Saccharomyces cerevisiae OX=4932 GN=TY1B ...	[more]

BLAST of Cmc05g0130321 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DD25	1.7e-86	96.95	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G0070...	[more]
A0A5A7STL2	1.7e-86	96.95	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G0015...	[more]
A0A5D3B9E3	2.5e-69	83.87	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G0049...	[more]
A0A5D3E496	3.2e-69	84.52	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold343G0056...	[more]
E2GK51	7.2e-69	82.58	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]

BLAST of Cmc05g0130321 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00710.1	9.4e-05	40.00	Polynucleotidyl transferase, ribonuclease H-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..163 e-value: 4.0E-33 score: 116.4
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 2..88 e-value: 3.5E-9 score: 36.9
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..150 score: 22.208576
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 5..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc05g0130321.1	Cmc05g0130321.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding