Cmc05g0130041 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc05g0130041
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	CMiso1.1chr05: 8347052 .. 8347669 (+)
RNA-Seq Expression	Cmc05g0130041
Synteny	Cmc05g0130041

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGTACAATCGTTTAAGTGAATATTTATTGAAAGAAGGTTATCAAAATAATCCAATTTGTCCATGTGTTTTTATTAAGAAATCACAGTCAGGATTTGCGATTATAGTTGTATATGTTGATGATTTAAATATAATTGGAACTCCTGAAGAGCTTTCAAAGGCAATAGAATATCTCAAAAATGAATTTGAAATGAAAGATCTTGGTAAGACAAAATTTTGCCTTGGCTTACAAATCGAGCATTTAGCCGATGGAATTTTTATTCATCAATCAACATATACAGAAAAGATTTTAAAAAGATTCTACATGGACAAAGCACACCCATTAAACATTCAAATGGTGGTTCGATCACTAGATGTAAAAAAGGATATCTTTCGACCTCGAGAAGATAATGAAGAATTACTTGGTCTTGAAGTACCGTACCTTAGTGCAATAGGTGTACTAATGTATCTTGCTAATAACACAAGACCAGATATAGCATTTTTAGTAAATTTGTTAGCAAGATATAGTTCTTCTCCAACAAAAAAACATTGGAATGGAGTTAAGCATGTACTTCGTTATCTTCGAGGGACAATTGATATGGGTTTGTTTATTCAAATAAATCAAACTTTGATCTAG

mRNA sequence

ATGTGGTACAATCGTTTAAGTGAATATTTATTGAAAGAAGGTTATCAAAATAATCCAATTTGTCCATGTGTTTTTATTAAGAAATCACAGTCAGGATTTGCGATTATAGTTGTATATGTTGATGATTTAAATATAATTGGAACTCCTGAAGAGCTTTCAAAGGCAATAGAATATCTCAAAAATGAATTTGAAATGAAAGATCTTGGTAAGACAAAATTTTGCCTTGGCTTACAAATCGAGCATTTAGCCGATGGAATTTTTATTCATCAATCAACATATACAGAAAAGATTTTAAAAAGATTCTACATGGACAAAGCACACCCATTAAACATTCAAATGGTGGTTCGATCACTAGATGTAAAAAAGGATATCTTTCGACCTCGAGAAGATAATGAAGAATTACTTGGTCTTGAAGTACCGTACCTTAGTGCAATAGGTGTACTAATGTATCTTGCTAATAACACAAGACCAGATATAGCATTTTTAGTAAATTTGTTAGCAAGATATAGTTCTTCTCCAACAAAAAAACATTGGAATGGAGTTAAGCATGTACTTCGTTATCTTCGAGGGACAATTGATATGGGTTTGTTTATTCAAATAAATCAAACTTTGATCTAG

Coding sequence (CDS)

ATGTGGTACAATCGTTTAAGTGAATATTTATTGAAAGAAGGTTATCAAAATAATCCAATTTGTCCATGTGTTTTTATTAAGAAATCACAGTCAGGATTTGCGATTATAGTTGTATATGTTGATGATTTAAATATAATTGGAACTCCTGAAGAGCTTTCAAAGGCAATAGAATATCTCAAAAATGAATTTGAAATGAAAGATCTTGGTAAGACAAAATTTTGCCTTGGCTTACAAATCGAGCATTTAGCCGATGGAATTTTTATTCATCAATCAACATATACAGAAAAGATTTTAAAAAGATTCTACATGGACAAAGCACACCCATTAAACATTCAAATGGTGGTTCGATCACTAGATGTAAAAAAGGATATCTTTCGACCTCGAGAAGATAATGAAGAATTACTTGGTCTTGAAGTACCGTACCTTAGTGCAATAGGTGTACTAATGTATCTTGCTAATAACACAAGACCAGATATAGCATTTTTAGTAAATTTGTTAGCAAGATATAGTTCTTCTCCAACAAAAAAACATTGGAATGGAGTTAAGCATGTACTTCGTTATCTTCGAGGGACAATTGATATGGGTTTGTTTATTCAAATAAATCAAACTTTGATCTAG

Protein sequence

MWYNRLSEYLLKEGYQNNPICPCVFIKKSQSGFAIIVVYVDDLNIIGTPEELSKAIEYLKNEFEMKDLGKTKFCLGLQIEHLADGIFIHQSTYTEKILKRFYMDKAHPLNIQMVVRSLDVKKDIFRPREDNEELLGLEVPYLSAIGVLMYLANNTRPDIAFLVNLLARYSSSPTKKHWNGVKHVLRYLRGTIDMGLFIQINQTLI

Homology

[Close]

BLAST of Cmc05g0130041 vs. NCBI nr
Match: RVW94544.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 344.7 bits (883), Expect = 5.3e-91
Identity = 159/197 (80.71%), Postives = 177/197 (89.85%), Query Frame = 0


Query: 1    MWYNRLSEYLLKEGYQNNPICPCVFIKKSQSGFAIIVVYVDDLNIIGTPEELSKAIEYLK 60
            MWYNRLSEYLLKEGY NNPICPC+FIKKS++GFAII VYVDDLN++GTPEEL++   YLK
Sbjct: 961  MWYNRLSEYLLKEGYVNNPICPCIFIKKSETGFAIIAVYVDDLNLVGTPEELTRTTNYLK 1020

Query: 61   NEFEMKDLGKTKFCLGLQIEHLADGIFIHQSTYTEKILKRFYMDKAHPLNIQMVVRSLDV 120
             EFEMKDLGKTKFCLGLQIEH  +G+ +HQSTY +K+LKRFYMDKAHPL+  MVVRSLDV
Sbjct: 1021 KEFEMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKRFYMDKAHPLSSSMVVRSLDV 1080

Query: 121  KKDIFRPREDNEELLGLEVPYLSAIGVLMYLANNTRPDIAFLVNLLARYSSSPTKKHWNG 180
            KKD FRP E +EELLG EVPYLSAIG LMYLAN TRPDIAF VNLLARYSSSPT++HWNG
Sbjct: 1081 KKDPFRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSSPTRRHWNG 1140

Query: 181  VKHVLRYLRGTIDMGLF 198
            +KH+LRYLRGT DMGLF
Sbjct: 1141 IKHILRYLRGTTDMGLF 1157

[Close]

BLAST of Cmc05g0130041 vs. NCBI nr
Match: RVW93168.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 344.4 bits (882), Expect = 7.0e-91
Identity = 159/197 (80.71%), Postives = 177/197 (89.85%), Query Frame = 0


Query: 1   MWYNRLSEYLLKEGYQNNPICPCVFIKKSQSGFAIIVVYVDDLNIIGTPEELSKAIEYLK 60
           MWYNRLSEYLLKEGY NNPICPC+FIKKS++GFAII VYVDDLN++GTPEEL++   YLK
Sbjct: 496 MWYNRLSEYLLKEGYVNNPICPCIFIKKSETGFAIIAVYVDDLNLVGTPEELTRTTNYLK 555

Query: 61  NEFEMKDLGKTKFCLGLQIEHLADGIFIHQSTYTEKILKRFYMDKAHPLNIQMVVRSLDV 120
            EFEMKDLGKTKFCLGLQIEH  +G+ +HQSTY +K+LKRFYMDKAHPL+  MVVRSLDV
Sbjct: 556 KEFEMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKRFYMDKAHPLSSPMVVRSLDV 615

Query: 121 KKDIFRPREDNEELLGLEVPYLSAIGVLMYLANNTRPDIAFLVNLLARYSSSPTKKHWNG 180
           KKD FRP E +EELLG EVPYLSAIG LMYLAN TRPDIAF VNLLARYSSSPT++HWNG
Sbjct: 616 KKDPFRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSSPTRRHWNG 675

Query: 181 VKHVLRYLRGTIDMGLF 198
           +KH+LRYLRGT DMGLF
Sbjct: 676 IKHILRYLRGTTDMGLF 692

[Close]

BLAST of Cmc05g0130041 vs. NCBI nr
Match: RVX03802.1 (Copia protein [Vitis vinifera])

HSP 1 Score: 344.0 bits (881), Expect = 9.1e-91
Identity = 159/197 (80.71%), Postives = 176/197 (89.34%), Query Frame = 0


Query: 1   MWYNRLSEYLLKEGYQNNPICPCVFIKKSQSGFAIIVVYVDDLNIIGTPEELSKAIEYLK 60
           MWYNRLSEYLLKEGY NNPICPC+FIKKS++GFAII VYVDDLN++GTPEEL++   YLK
Sbjct: 564 MWYNRLSEYLLKEGYVNNPICPCIFIKKSETGFAIIAVYVDDLNLVGTPEELTRTTNYLK 623

Query: 61  NEFEMKDLGKTKFCLGLQIEHLADGIFIHQSTYTEKILKRFYMDKAHPLNIQMVVRSLDV 120
            EFEMKDLGKTKFCLGLQIEH  +G+ +HQSTY +K+LKRFYMDK HPL+  MVVRSLDV
Sbjct: 624 KEFEMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKRFYMDKTHPLSSPMVVRSLDV 683

Query: 121 KKDIFRPREDNEELLGLEVPYLSAIGVLMYLANNTRPDIAFLVNLLARYSSSPTKKHWNG 180
           KKD FRP E +EELLG EVPYLSAIG LMYLAN TRPDIAF VNLLARYSSSPT+KHWNG
Sbjct: 684 KKDPFRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSSPTRKHWNG 743

Query: 181 VKHVLRYLRGTIDMGLF 198
           +KH+LRYLRGT DMGLF
Sbjct: 744 IKHILRYLRGTTDMGLF 760

[Close]

BLAST of Cmc05g0130041 vs. NCBI nr
Match: RVW99682.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 343.2 bits (879), Expect = 1.5e-90
Identity = 158/197 (80.20%), Postives = 177/197 (89.85%), Query Frame = 0


Query: 1   MWYNRLSEYLLKEGYQNNPICPCVFIKKSQSGFAIIVVYVDDLNIIGTPEELSKAIEYLK 60
           MWYNRLSEYLLKEGY NNPICPC+FIKKS++GFAII VYVDDLN++GTPEEL++   YLK
Sbjct: 501 MWYNRLSEYLLKEGYVNNPICPCIFIKKSETGFAIIAVYVDDLNLVGTPEELTRTTNYLK 560

Query: 61  NEFEMKDLGKTKFCLGLQIEHLADGIFIHQSTYTEKILKRFYMDKAHPLNIQMVVRSLDV 120
            EFEMKDLGKTKFCLGLQIEH  +G+ +HQSTY +K+LKRFYMDKAHPL+  MVVRSLDV
Sbjct: 561 KEFEMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKRFYMDKAHPLSSPMVVRSLDV 620

Query: 121 KKDIFRPREDNEELLGLEVPYLSAIGVLMYLANNTRPDIAFLVNLLARYSSSPTKKHWNG 180
           KKD FRP E +EELLG EVPYLSAIG LMYLAN TRPDIAF VNLLARYSS+PT++HWNG
Sbjct: 621 KKDPFRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTRRHWNG 680

Query: 181 VKHVLRYLRGTIDMGLF 198
           +KH+LRYLRGT DMGLF
Sbjct: 681 IKHILRYLRGTTDMGLF 697

[Close]

BLAST of Cmc05g0130041 vs. NCBI nr
Match: RVW59049.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera])

HSP 1 Score: 343.2 bits (879), Expect = 1.5e-90
Identity = 158/197 (80.20%), Postives = 177/197 (89.85%), Query Frame = 0


Query: 1   MWYNRLSEYLLKEGYQNNPICPCVFIKKSQSGFAIIVVYVDDLNIIGTPEELSKAIEYLK 60
           MWYNRLSEYLLKEGY NNPICPC+FIKKS++GFAII VYVDDLN++GTPEEL++   YLK
Sbjct: 702 MWYNRLSEYLLKEGYVNNPICPCIFIKKSETGFAIIAVYVDDLNLVGTPEELTRTTNYLK 761

Query: 61  NEFEMKDLGKTKFCLGLQIEHLADGIFIHQSTYTEKILKRFYMDKAHPLNIQMVVRSLDV 120
            EFEMKDLGKTKFCLGLQIEH  +G+ +HQSTY +K+LKRFYMDKAHPL+  MVVRSLDV
Sbjct: 762 KEFEMKDLGKTKFCLGLQIEHFPNGVLVHQSTYIKKVLKRFYMDKAHPLSSPMVVRSLDV 821

Query: 121 KKDIFRPREDNEELLGLEVPYLSAIGVLMYLANNTRPDIAFLVNLLARYSSSPTKKHWNG 180
           KKD FRP E +EELLG EVPYLSAIG LMYLAN TRPDIAF VNLLARYSS+PT++HWNG
Sbjct: 822 KKDPFRPCEKDEELLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTRRHWNG 881

Query: 181 VKHVLRYLRGTIDMGLF 198
           +KH+LRYLRGT DMGLF
Sbjct: 882 IKHILRYLRGTTDMGLF 898

[Close]

BLAST of Cmc05g0130041 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.8e-28
Identity = 72/194 (37.11%), Postives = 111/194 (57.22%), Query Frame = 0


Query: 2    WYNRLSEYLLKEGYQNNPICPCVFIKK-SQSGFAIIVVYVDDLNIIGTPEEL-SKAIEYL 61
            WY +   ++  + Y      PCV+ K+ S++ F I+++YVDD+ I+G  + L +K    L
Sbjct: 970  WYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKGDL 1029

Query: 62   KNEFEMKDLGKTKFCLGLQI--EHLADGIFIHQSTYTEKILKRFYMDKAHPLNIQMVVRS 121
               F+MKDLG  +  LG++I  E  +  +++ Q  Y E++L+RF M  A P++  +    
Sbjct: 1030 SKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGHL 1089

Query: 122  LDVKKDIFRPREDNEELLGLEVPYLSAIGVLMYLANNTRPDIAFLVNLLARYSSSPTKKH 181
               KK    P    E+    +VPY SA+G LMY    TRPDIA  V +++R+  +P K+H
Sbjct: 1090 KLSKK--MCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEH 1149

Query: 182  WNGVKHVLRYLRGT 192
            W  VK +LRYLRGT
Sbjct: 1150 WEAVKWILRYLRGT 1161

[Close]

BLAST of Cmc05g0130041 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 114.8 bits (286), Expect = 1.2e-24
Identity = 69/207 (33.33%), Postives = 109/207 (52.66%), Query Frame = 0


Query: 2    WYNRLSEYLLKEGYQNNPICPCVFI--KKSQSGFAIIVVYVDDLNI-IGTPEELSKAIEY 61
            W+    + L +  + N+ +  C++I  K + +    +++YVDD+ I  G    ++    Y
Sbjct: 1048 WFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFKRY 1107

Query: 62   LKNEFEMKDLGKTKFCLGLQIEHLADGIFIHQSTYTEKILKRFYMDKAHPLNIQMVVRSL 121
            L  +F M DL + K  +G++IE   D I++ QS Y +KIL +F M+  + ++  +     
Sbjct: 1108 LMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPL----- 1167

Query: 122  DVKKDIFRPREDNEELLGLE----VPYLSAIGVLMYLANNTRPDIAFLVNLLARYSSSPT 181
                    P + N ELL  +     P  S IG LMY+   TRPD+   VN+L+RYSS   
Sbjct: 1168 --------PSKINYELLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNN 1227

Query: 182  KKHWNGVKHVLRYLRGTIDMGLFIQIN 202
             + W  +K VLRYL+GTIDM L  + N
Sbjct: 1228 SELWQNLKRVLRYLKGTIDMKLIFKKN 1241

[Close]

BLAST of Cmc05g0130041 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.9e-22
Identity = 68/207 (32.85%), Postives = 101/207 (48.79%), Query Frame = 0


Query: 2    WYNRLSEYLLKEGYQNNPICPCVFIKKSQSGFAIIVVYVDDLNIIGTPEELSK-AIEYLK 61
            WY  L  YLL  G+ N+     +F+ +       ++VYVDD+ I G    L K  ++ L 
Sbjct: 1096 WYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALS 1155

Query: 62   NEFEMKDLGKTKFCLGLQIEHLADGIFIHQSTYTEKILKRFYMDKAHPLNIQMVVR---S 121
              F +K+     + LG++ + +  G+ + Q  YT  +L R  M  A P+   M      +
Sbjct: 1156 QRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLT 1215

Query: 122  LDVKKDIFRPREDNEELLGLEVPYLSAIGVLMYLANNTRPDIAFLVNLLARYSSSPTKKH 181
            L     +  P E           Y   +G L YLA  TRPD+++ VN L++Y   PT  H
Sbjct: 1216 LHSGTKLPDPTE-----------YRGIVGSLQYLA-FTRPDLSYAVNRLSQYMHMPTDDH 1275

Query: 182  WNGVKHVLRYLRGTIDMGLFIQINQTL 205
            WN +K VLRYL GT D G+F++   TL
Sbjct: 1276 WNALKRVLRYLAGTPDHGIFLKKGNTL 1290

[Close]

BLAST of Cmc05g0130041 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 7.9e-21
Identity = 65/207 (31.40%), Postives = 101/207 (48.79%), Query Frame = 0


Query: 2    WYNRLSEYLLKEGYQNNPICPCVFIKKSQSGFAIIVVYVDDLNIIGT-PEELSKAIEYLK 61
            WY  L  YLL  G+ N+     +F+ +       ++VYVDD+ I G  P  L   ++ L 
Sbjct: 1113 WYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLS 1172

Query: 62   NEFEMKDLGKTKFCLGLQIEHLADGIFIHQSTYTEKILKRFYMDKAHPLNIQMVVR---S 121
              F +KD  +  + LG++ + +  G+ + Q  Y   +L R  M  A P+   M      S
Sbjct: 1173 QRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLS 1232

Query: 122  LDVKKDIFRPREDNEELLGLEVPYLSAIGVLMYLANNTRPDIAFLVNLLARYSSSPTKKH 181
            L     +  P E           Y   +G L YLA  TRPDI++ VN L+++   PT++H
Sbjct: 1233 LYSGTKLTDPTE-----------YRGIVGSLQYLA-FTRPDISYAVNRLSQFMHMPTEEH 1292

Query: 182  WNGVKHVLRYLRGTIDMGLFIQINQTL 205
               +K +LRYL GT + G+F++   TL
Sbjct: 1293 LQALKRILRYLAGTPNHGIFLKKGNTL 1307

[Close]

BLAST of Cmc05g0130041 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.9e-17
Identity = 57/174 (32.76%), Postives = 91/174 (52.30%), Query Frame = 0


Query: 36  IVVYVDDLNIIGTPEE-LSKAIEYLKNEFEMKDLGKTKFCLGLQIEHLADGIFIHQSTYT 95
           +++YVDD+ + G+    L+  I  L + F MKDLG   + LG+QI+    G+F+ Q+ Y 
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62

Query: 96  EKILKRFYMDKAHPLNIQMVVRSLDVKKDIFRPREDNEELLGLEVP----YLSAIGVLMY 155
           E+IL    M    P++  +             P + N  +   + P    + S +G L Y
Sbjct: 63  EQILNNAGMLDCKPMSTPL-------------PLKLNSSVSTAKYPDPSDFRSIVGALQY 122

Query: 156 LANNTRPDIAFLVNLLARYSSSPTKKHWNGVKHVLRYLRGTIDMGLFIQINQTL 205
           L   TRPDI++ VN++ +    PT   ++ +K VLRY++GTI  GL+I  N  L
Sbjct: 123 L-TLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKL 162

[Close]

BLAST of Cmc05g0130041 vs. ExPASy TrEMBL
Match: A0A2N9I5S5 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS47934 PE=4 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 3.6e-93
Identity = 165/197 (83.76%), Postives = 179/197 (90.86%), Query Frame = 0


Query: 1   MWYNRLSEYLLKEGYQNNPICPCVFIKKSQSGFAIIVVYVDDLNIIGTPEELSKAIEYLK 60
           MWYNRLSEYLLKEG++NNPICPCVFIKKS+SGFAI+ VYVDDLN++GTPEEL+K  +YLK
Sbjct: 392 MWYNRLSEYLLKEGFENNPICPCVFIKKSESGFAIVAVYVDDLNLVGTPEELTKTADYLK 451

Query: 61  NEFEMKDLGKTKFCLGLQIEHLADGIFIHQSTYTEKILKRFYMDKAHPLNIQMVVRSLDV 120
           NEFEMKDLGKTKFCLGLQIEHL DGI IHQSTYTEK+LK F+MDKAHPL+  MVVRSLDV
Sbjct: 452 NEFEMKDLGKTKFCLGLQIEHLPDGILIHQSTYTEKVLKHFHMDKAHPLSTPMVVRSLDV 511

Query: 121 KKDIFRPREDNEELLGLEVPYLSAIGVLMYLANNTRPDIAFLVNLLARYSSSPTKKHWNG 180
           KKD FRP+E  EE LG EVPYLSAIG LMYLAN TRPDIAF VNLLARYSS+PT +HWNG
Sbjct: 512 KKDPFRPQEVGEETLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTLRHWNG 571

Query: 181 VKHVLRYLRGTIDMGLF 198
           VKHVLRYLRGT DMGLF
Sbjct: 572 VKHVLRYLRGTTDMGLF 588

[Close]

BLAST of Cmc05g0130041 vs. ExPASy TrEMBL
Match: A0A2N9G6F8 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS22947 PE=4 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 3.6e-93
Identity = 165/197 (83.76%), Postives = 179/197 (90.86%), Query Frame = 0


Query: 1   MWYNRLSEYLLKEGYQNNPICPCVFIKKSQSGFAIIVVYVDDLNIIGTPEELSKAIEYLK 60
           MWYNRLSEYLLKEG++NNPICPCVFIKKS+SGFAI+ VYVDDLN++GTPEEL+K  +YLK
Sbjct: 392 MWYNRLSEYLLKEGFENNPICPCVFIKKSESGFAIVAVYVDDLNLVGTPEELTKTADYLK 451

Query: 61  NEFEMKDLGKTKFCLGLQIEHLADGIFIHQSTYTEKILKRFYMDKAHPLNIQMVVRSLDV 120
           NEFEMKDLGKTKFCLGLQIEHL DGI IHQSTYTEK+LK F+MDKAHPL+  MVVRSLDV
Sbjct: 452 NEFEMKDLGKTKFCLGLQIEHLPDGILIHQSTYTEKVLKHFHMDKAHPLSTPMVVRSLDV 511

Query: 121 KKDIFRPREDNEELLGLEVPYLSAIGVLMYLANNTRPDIAFLVNLLARYSSSPTKKHWNG 180
           KKD FRP+E  EE LG EVPYLSAIG LMYLAN TRPDIAF VNLLARYSS+PT +HWNG
Sbjct: 512 KKDPFRPQEVGEETLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTLRHWNG 571

Query: 181 VKHVLRYLRGTIDMGLF 198
           VKHVLRYLRGT DMGLF
Sbjct: 572 VKHVLRYLRGTTDMGLF 588

[Close]

BLAST of Cmc05g0130041 vs. ExPASy TrEMBL
Match: A0A2N9FE48 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS13021 PE=4 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 3.6e-93
Identity = 165/197 (83.76%), Postives = 179/197 (90.86%), Query Frame = 0


Query: 1   MWYNRLSEYLLKEGYQNNPICPCVFIKKSQSGFAIIVVYVDDLNIIGTPEELSKAIEYLK 60
           MWYNRLSEYLLKEG++NNPICPCVFIKKS+SGFAI+ VYVDDLN++GTPEEL+K  +YLK
Sbjct: 1   MWYNRLSEYLLKEGFENNPICPCVFIKKSESGFAIVAVYVDDLNLVGTPEELTKTADYLK 60

Query: 61  NEFEMKDLGKTKFCLGLQIEHLADGIFIHQSTYTEKILKRFYMDKAHPLNIQMVVRSLDV 120
           NEFEMKDLGKTKFCLGLQIEHL DGI IHQSTYTEK+LK F+MDKAHPL+  MVVRSLDV
Sbjct: 61  NEFEMKDLGKTKFCLGLQIEHLPDGILIHQSTYTEKVLKHFHMDKAHPLSTPMVVRSLDV 120

Query: 121 KKDIFRPREDNEELLGLEVPYLSAIGVLMYLANNTRPDIAFLVNLLARYSSSPTKKHWNG 180
           KKD FRP+E  EE LG EVPYLSAIG LMYLAN TRPDIAF VNLLARYSS+PT +HWNG
Sbjct: 121 KKDPFRPQEVGEETLGPEVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTLRHWNG 180

Query: 181 VKHVLRYLRGTIDMGLF 198
           VKHVLRYLRGT DMGLF
Sbjct: 181 VKHVLRYLRGTTDMGLF 197

[Close]

BLAST of Cmc05g0130041 vs. ExPASy TrEMBL
Match: A0A2N9HV99 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS43506 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 1.0e-92
Identity = 164/197 (83.25%), Postives = 179/197 (90.86%), Query Frame = 0


Query: 1   MWYNRLSEYLLKEGYQNNPICPCVFIKKSQSGFAIIVVYVDDLNIIGTPEELSKAIEYLK 60
           MWYNRLSEYLLKEG++NNPICPCVFIKKS+SGFAI+ VYVDDLN++GTPEEL+K  +YLK
Sbjct: 1   MWYNRLSEYLLKEGFENNPICPCVFIKKSESGFAIVAVYVDDLNLVGTPEELTKTADYLK 60

Query: 61  NEFEMKDLGKTKFCLGLQIEHLADGIFIHQSTYTEKILKRFYMDKAHPLNIQMVVRSLDV 120
           NEFEMKDLGKTKFCLGLQIEHL DGI IHQSTYTEK+LK F+MDKAHPL+  MVVRSLDV
Sbjct: 61  NEFEMKDLGKTKFCLGLQIEHLPDGILIHQSTYTEKVLKHFHMDKAHPLSTPMVVRSLDV 120

Query: 121 KKDIFRPREDNEELLGLEVPYLSAIGVLMYLANNTRPDIAFLVNLLARYSSSPTKKHWNG 180
           KKD FRP+E  EE LG +VPYLSAIG LMYLAN TRPDIAF VNLLARYSS+PT +HWNG
Sbjct: 121 KKDPFRPQEVGEETLGPKVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTLRHWNG 180

Query: 181 VKHVLRYLRGTIDMGLF 198
           VKHVLRYLRGT DMGLF
Sbjct: 181 VKHVLRYLRGTTDMGLF 197

[Close]

BLAST of Cmc05g0130041 vs. ExPASy TrEMBL
Match: A0A2N9FB90 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS12335 PE=4 SV=1)

HSP 1 Score: 349.4 bits (895), Expect = 1.0e-92
Identity = 164/197 (83.25%), Postives = 179/197 (90.86%), Query Frame = 0


Query: 1   MWYNRLSEYLLKEGYQNNPICPCVFIKKSQSGFAIIVVYVDDLNIIGTPEELSKAIEYLK 60
           MWYNRLSEYLLKEG++NNPICPCVFIKKS+SGFAI+ VYVDDLN++GTPEEL+K  +YLK
Sbjct: 202 MWYNRLSEYLLKEGFENNPICPCVFIKKSESGFAIVAVYVDDLNLVGTPEELTKTADYLK 261

Query: 61  NEFEMKDLGKTKFCLGLQIEHLADGIFIHQSTYTEKILKRFYMDKAHPLNIQMVVRSLDV 120
           NEFEMKDLGKTKFCLGLQIEHL DGI IHQSTYTEK+LK F+MDKAHPL+  MVVRSLDV
Sbjct: 262 NEFEMKDLGKTKFCLGLQIEHLPDGILIHQSTYTEKVLKHFHMDKAHPLSTPMVVRSLDV 321

Query: 121 KKDIFRPREDNEELLGLEVPYLSAIGVLMYLANNTRPDIAFLVNLLARYSSSPTKKHWNG 180
           KKD FRP+E  EE LG +VPYLSAIG LMYLAN TRPDIAF VNLLARYSS+PT +HWNG
Sbjct: 322 KKDPFRPQEVGEETLGPKVPYLSAIGALMYLANCTRPDIAFSVNLLARYSSAPTLRHWNG 381

Query: 181 VKHVLRYLRGTIDMGLF 198
           VKHVLRYLRGT DMGLF
Sbjct: 382 VKHVLRYLRGTTDMGLF 398

[Close]

BLAST of Cmc05g0130041 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 89.0 bits (219), Expect = 4.9e-18
Identity = 57/174 (32.76%), Postives = 91/174 (52.30%), Query Frame = 0


Query: 36  IVVYVDDLNIIGTPEE-LSKAIEYLKNEFEMKDLGKTKFCLGLQIEHLADGIFIHQSTYT 95
           +++YVDD+ + G+    L+  I  L + F MKDLG   + LG+QI+    G+F+ Q+ Y 
Sbjct: 3   LLLYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYA 62

Query: 96  EKILKRFYMDKAHPLNIQMVVRSLDVKKDIFRPREDNEELLGLEVP----YLSAIGVLMY 155
           E+IL    M    P++  +             P + N  +   + P    + S +G L Y
Sbjct: 63  EQILNNAGMLDCKPMSTPL-------------PLKLNSSVSTAKYPDPSDFRSIVGALQY 122

Query: 156 LANNTRPDIAFLVNLLARYSSSPTKKHWNGVKHVLRYLRGTIDMGLFIQINQTL 205
           L   TRPDI++ VN++ +    PT   ++ +K VLRY++GTI  GL+I  N  L
Sbjct: 123 L-TLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKL 162

[Close]

BLAST of Cmc05g0130041 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 85.9 bits (211), Expect = 4.2e-17
Identity = 62/200 (31.00%), Postives = 96/200 (48.00%), Query Frame = 0


Query: 2   WYNRLSEYLLKEGYQNNPICPCVFIKKSQSGFAIIVVYVDDLNIIGTPE-ELSKAIEYLK 61
           W+ + S  L+  G+  +      F+K + + F  ++VYVDD+ I    +  + +    LK
Sbjct: 246 WFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLK 305

Query: 62  NEFEMKDLGKTKFCLGLQIEHLADGIFIHQSTYTEKILKRFYMDKAHPLNIQM---VVRS 121
           + F+++DLG  K+ LGL+I   A GI I Q  Y   +L    +    P ++ M   V  S
Sbjct: 306 SCFKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFS 365

Query: 122 LDVKKDIFRPREDNEELLGLEVPYLSAIGVLMYLANNTRPDIAFLVNLLARYSSSPTKKH 181
                D    +            Y   IG LMYL   TR DI+F VN L+++S +P   H
Sbjct: 366 AHSGGDFVDAK-----------AYRRLIGRLMYL-QITRLDISFAVNKLSQFSEAPRLAH 425

Query: 182 WNGVKHVLRYLRGTIDMGLF 198
              V  +L Y++GT+  GLF
Sbjct: 426 QQAVMKILHYIKGTVGQGLF 433

[Close]

BLAST of Cmc05g0130041 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 44.3 bits (103), Expect = 1.4e-04
Identity = 23/56 (41.07%), Postives = 31/56 (55.36%), Query Frame = 0


Query: 149 MYLANNTRPDIAFLVNLLARYSSSPTKKHWNGVKHVLRYLRGTIDMGLFIQINQTL 205
           MYL   TRPD+ F VN L+++SS+        V  VL Y++GT+  GLF      L
Sbjct: 1   MYL-TITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDL 55

The following BLAST results are available for this feature:

BLAST of Cmc05g0130041 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW94544.1	5.3e-91	80.71	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW93168.1	7.0e-91	80.71	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVX03802.1	9.1e-91	80.71	Copia protein [Vitis vinifera]	[more]
RVW99682.1	1.5e-90	80.20	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]
RVW59049.1	1.5e-90	80.20	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Vitis vinifera]	[more]

BLAST of Cmc05g0130041 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.8e-28	37.11	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.2e-24	33.33	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	1.9e-22	32.85	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	7.9e-21	31.40	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P92519	6.9e-17	32.76	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc05g0130041 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2N9I5S5	3.6e-93	83.76	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]
A0A2N9G6F8	3.6e-93	83.76	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]
A0A2N9FE48	3.6e-93	83.76	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]
A0A2N9HV99	1.0e-92	83.25	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]
A0A2N9FB90	1.0e-92	83.25	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Fagus sylvatic...	[more]

BLAST of Cmc05g0130041 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00810.1	4.9e-18	32.76	DNA/RNA polymerases superfamily protein	[more]
AT4G23160.1	4.2e-17	31.00	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00240.1	1.4e-04	41.07	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 1..113 e-value: 3.9E-17 score: 62.7
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 1..193

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc05g0130041.1	Cmc05g0130041.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding