Cmc05g0128741 (gene) Melon (Charmono) v1.1

Overview
NameCmc05g0128741
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetroelement pol polyprotein-like
LocationCMiso1.1chr05: 6399650 .. 6400723 (-)
RNA-Seq ExpressionCmc05g0128741
SyntenyCmc05g0128741
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GACATTAAACCATGCTCTGCTTCTATTAGCTTGCCAAATAAAAATACTTATCAAGTCTAGAACATTGGTACTGTAAAACTATCTGATACACTTATTTTGAAAGATGTCCTTTATATGCCTGACTTCACCTTCAACTTACTTTCTGTAAGTGCAATTACAAAGAAGTCATCACTCTCTGTTCAATTCTTCACTGACATTTGTATCATTCAGGACAAGTACACTTCGAAGAAGATTGGCAGTGCTAAACTCTTCCAAGGACTATACATCCTTGACCAACCCACATATTTTCCGTCCATTTGTGCTGTCACTACAAATAAAGCATCCCTATGGCACCAACGGATAGGTCATCCCTCTACTGAGACCTTAAACTCTTTACAAATTCCTTTGTTTTTAAAACCATCTACAGTAGACAAAATGGCTCATTGTACTATTTGTCCGCTGGCGAAACAAAGAAAGCTTTCCTTTACTTCTAATAACCATTTGTCTTCAAATGCTTTTGATCTAATTTATGTAGATATTTGGGGACCTTTCTCAACAGAAACATATTCTGGATATTCTTATTTTCTTACCATTGTTGATGATGCCACTCGTTACACTTGGGTCTTCATGCTCAAACTCAAATCTGACGTTATCTCCATCATACCACAGTTTTTCAAACTCATAGAGACCCAATATGGCAAAGCAATCAAGCAAGTGAGATCTGACAATGCTCCTGAACTCAAATTTACCACCTTTTTTGAACAAAAAGGAGTGATACACCAATACTCATGTGTTCAATGCCCACAGCAGAATTCTGTTGTTGAAAGAAAACATCAACATATTTTGAACACAGCCCGTGCTCTCTATTTTCAGTCTCAAGTTCCCCTAAATTTTTGGGGAGACTGCATCCTCACTGCTATTTACTTGATTAACAGAACCCCATCCAAGTTACTACAATGGAAATCCCCATTCCAGAAATTAAACAACACCATCCCTGACTACAACTCATTAAAAGTTTTTGGCTCCCTATGCTATGCATCATCACTACCTTACAACCGTTCCAAATTCTAAATCAGAGCTATTCCTTCTGTCTTC

mRNA sequence

GACATTAAACCATGCTCTGCTTCTATTAGCTTGCCAAATAAAAATACTTATCAAGTCTAGAACATTGGTACTGTAAAACTATCTGATACACTTATTTTGAAAGATGTCCTTTATATGCCTGACTTCACCTTCAACTTACTTTCTGTAAGTGCAATTACAAAGAAGTCATCACTCTCTGTTCAATTCTTCACTGACATTTGTATCATTCAGGACAAGTACACTTCGAAGAAGATTGGCAGTGCTAAACTCTTCCAAGGACTATACATCCTTGACCAACCCACATATTTTCCGTCCATTTGTGCTGTCACTACAAATAAAGCATCCCTATGGCACCAACGGATAGATATTTGGGGACCTTTCTCAACAGAAACATATTCTGGATATTCTTATTTTCTTACCATTGTTGATGATGCCACTCGTTACACTTGGGTCTTCATGCTCAAACTCAAATCTGACGTTATCTCCATCATACCACAGTTTTTCAAACTCATAGAGACCCAATATGGCAAAGCAATCAAGCAAGTGAGATCTGACAATGCTCCTGAACTCAAATTTACCACCTTTTTTGAACAAAAAGGAGTGATACACCAATACTCATGTGTTCAATGCCCACAGCAGAATTCTGTTGTTGAAAGAAAACATCAACATATTTTGAACACAGCCCGTGCTCTCTATTTTCAGTCTCAAGTTCCCCTAAATTTTTGGGGAGACTGCATCCTCACTGCTATTTACTTGATTAACAGAACCCCATCCAAGTTACTACAATGGAAATCCCCATTCCAGAAATTAAACAACACCATCCCTGACTACAACTCATTAAAAGTTTTTGGCTCCCTATGCTATGCATCATCACTACCTTACAACCGTTCCAAATTCTAAATCAGAGCTATTCCTTCTGTCTTC

Coding sequence (CDS)

ATGCCTGACTTCACCTTCAACTTACTTTCTGTAAGTGCAATTACAAAGAAGTCATCACTCTCTGTTCAATTCTTCACTGACATTTGTATCATTCAGGACAAGTACACTTCGAAGAAGATTGGCAGTGCTAAACTCTTCCAAGGACTATACATCCTTGACCAACCCACATATTTTCCGTCCATTTGTGCTGTCACTACAAATAAAGCATCCCTATGGCACCAACGGATAGATATTTGGGGACCTTTCTCAACAGAAACATATTCTGGATATTCTTATTTTCTTACCATTGTTGATGATGCCACTCGTTACACTTGGGTCTTCATGCTCAAACTCAAATCTGACGTTATCTCCATCATACCACAGTTTTTCAAACTCATAGAGACCCAATATGGCAAAGCAATCAAGCAAGTGAGATCTGACAATGCTCCTGAACTCAAATTTACCACCTTTTTTGAACAAAAAGGAGTGATACACCAATACTCATGTGTTCAATGCCCACAGCAGAATTCTGTTGTTGAAAGAAAACATCAACATATTTTGAACACAGCCCGTGCTCTCTATTTTCAGTCTCAAGTTCCCCTAAATTTTTGGGGAGACTGCATCCTCACTGCTATTTACTTGATTAACAGAACCCCATCCAAGTTACTACAATGGAAATCCCCATTCCAGAAATTAAACAACACCATCCCTGACTACAACTCATTAAAAGTTTTTGGCTCCCTATGCTATGCATCATCACTACCTTACAACCGTTCCAAATTCTAA

Protein sequence

MPDFTFNLLSVSAITKKSSLSVQFFTDICIIQDKYTSKKIGSAKLFQGLYILDQPTYFPSICAVTTNKASLWHQRIDIWGPFSTETYSGYSYFLTIVDDATRYTWVFMLKLKSDVISIIPQFFKLIETQYGKAIKQVRSDNAPELKFTTFFEQKGVIHQYSCVQCPQQNSVVERKHQHILNTARALYFQSQVPLNFWGDCILTAIYLINRTPSKLLQWKSPFQKLNNTIPDYNSLKVFGSLCYASSLPYNRSKF
Homology
BLAST of Cmc05g0128741 vs. NCBI nr
Match: KAA0031937.1 (retroelement pol polyprotein-like [Cucumis melo var. makuwa])

HSP 1 Score: 466.1 bits (1198), Expect = 2.0e-127
Identity = 222/223 (99.55%), Postives = 223/223 (100.00%), Query Frame = 0

Query: 32  QDKYTSKKIGSAKLFQGLYILDQPTYFPSICAVTTNKASLWHQRIDIWGPFSTETYSGYS 91
           +DKYTSKKIGSAKLFQGLYILDQPTYFPSICAVTTNKASLWHQRIDIWGPFSTETYSGYS
Sbjct: 136 KDKYTSKKIGSAKLFQGLYILDQPTYFPSICAVTTNKASLWHQRIDIWGPFSTETYSGYS 195

Query: 92  YFLTIVDDATRYTWVFMLKLKSDVISIIPQFFKLIETQYGKAIKQVRSDNAPELKFTTFF 151
           YFLTIVDDATRYTWVFMLKLKSDVISIIPQFFKLIETQYGKAIKQVRSDNAPELKFTTFF
Sbjct: 196 YFLTIVDDATRYTWVFMLKLKSDVISIIPQFFKLIETQYGKAIKQVRSDNAPELKFTTFF 255

Query: 152 EQKGVIHQYSCVQCPQQNSVVERKHQHILNTARALYFQSQVPLNFWGDCILTAIYLINRT 211
           EQKGVIHQYSCVQCPQQNSVVERKHQHILNTARALYFQSQVPLNFWGDCILTAIYLINRT
Sbjct: 256 EQKGVIHQYSCVQCPQQNSVVERKHQHILNTARALYFQSQVPLNFWGDCILTAIYLINRT 315

Query: 212 PSKLLQWKSPFQKLNNTIPDYNSLKVFGSLCYASSLPYNRSKF 255
           PSKLLQWKSPFQKLNNTIPDYNSLKVFGSLCYASSLPYNRSKF
Sbjct: 316 PSKLLQWKSPFQKLNNTIPDYNSLKVFGSLCYASSLPYNRSKF 358

BLAST of Cmc05g0128741 vs. NCBI nr
Match: TYK16758.1 (Copia protein [Cucumis melo var. makuwa])

HSP 1 Score: 463.0 bits (1190), Expect = 1.7e-126
Identity = 221/223 (99.10%), Postives = 222/223 (99.55%), Query Frame = 0

Query: 32  QDKYTSKKIGSAKLFQGLYILDQPTYFPSICAVTTNKASLWHQRIDIWGPFSTETYSGYS 91
           +DKYTSKKIGSAKLFQGLYILDQPTYFPSICAVTTNKASLWHQRIDIWGPFSTETYSGYS
Sbjct: 136 KDKYTSKKIGSAKLFQGLYILDQPTYFPSICAVTTNKASLWHQRIDIWGPFSTETYSGYS 195

Query: 92  YFLTIVDDATRYTWVFMLKLKSDVISIIPQFFKLIETQYGKAIKQVRSDNAPELKFTTFF 151
           YFLTIVDDATRYTWVFMLKLKSDVISIIPQFFKLIETQYGKAIKQVRSDNAPELKFTTFF
Sbjct: 196 YFLTIVDDATRYTWVFMLKLKSDVISIIPQFFKLIETQYGKAIKQVRSDNAPELKFTTFF 255

Query: 152 EQKGVIHQYSCVQCPQQNSVVERKHQHILNTARALYFQSQVPLNFWGDCILTAIYLINRT 211
           EQKGVIHQYSCVQCPQQNSVVERKHQHILNTARALYFQSQVPLNFWGDCILTAIYLINRT
Sbjct: 256 EQKGVIHQYSCVQCPQQNSVVERKHQHILNTARALYFQSQVPLNFWGDCILTAIYLINRT 315

Query: 212 PSKLLQWKSPFQKLNNTIPDYNSLKVFGSLCYASSLPYNRSKF 255
           PSKLLQWKS FQKLNNTIPDYNSLKVFGSLCYASSLPYNRSKF
Sbjct: 316 PSKLLQWKSSFQKLNNTIPDYNSLKVFGSLCYASSLPYNRSKF 358

BLAST of Cmc05g0128741 vs. NCBI nr
Match: KAA0068025.1 (Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa])

HSP 1 Score: 403.7 bits (1036), Expect = 1.2e-108
Identity = 207/294 (70.41%), Postives = 218/294 (74.15%), Query Frame = 0

Query: 18  SSLSVQFFTDICIIQDKYTSKKIGSAKLFQGLYILDQPTYFPSICAVTTNKASLWHQR-- 77
           SS S    T    + DKYTSKKIGSAKLFQGLYILDQPT FPSICAVT NKASLWHQR  
Sbjct: 86  SSFSPAINTPAFDLVDKYTSKKIGSAKLFQGLYILDQPTCFPSICAVTANKASLWHQRMG 145

Query: 78  -------------------------------------------------------IDIWG 137
                                                                  +DIWG
Sbjct: 146 HPSTETLNSLQIPLFLKPSTVDKMSHCTICPLAKQRKLSFTSNNHLSSNAFDLIHVDIWG 205

Query: 138 PFSTETYSGYSYFLTIVDDATRYTWVFMLKLKSDVISIIPQFFKLIETQYGKAIKQVRSD 197
           PFSTETYS YSYFLTIVDDATRYTWVFMLKLKSDVISIIP FFKLIETQYGKAIK+VRSD
Sbjct: 206 PFSTETYSEYSYFLTIVDDATRYTWVFMLKLKSDVISIIPHFFKLIETQYGKAIKKVRSD 265

Query: 198 NAPELKFTTFFEQKGVIHQYSCVQCPQQNSVVERKHQHILNTARALYFQSQVPLNFWGDC 255
           NA +LKFTTFFEQKGVIHQYSCVQ PQQNSVVE+KHQHILNTARALYFQSQVPLNFWGDC
Sbjct: 266 NAHKLKFTTFFEQKGVIHQYSCVQWPQQNSVVEKKHQHILNTARALYFQSQVPLNFWGDC 325

BLAST of Cmc05g0128741 vs. NCBI nr
Match: TYK18103.1 (Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa])

HSP 1 Score: 403.7 bits (1036), Expect = 1.2e-108
Identity = 207/294 (70.41%), Postives = 218/294 (74.15%), Query Frame = 0

Query: 18  SSLSVQFFTDICIIQDKYTSKKIGSAKLFQGLYILDQPTYFPSICAVTTNKASLWHQR-- 77
           SS S    T    + DKYTSKKIGSAKLFQGLYILDQPT FPSICAVT NKASLWHQR  
Sbjct: 86  SSFSPAINTPAFDLVDKYTSKKIGSAKLFQGLYILDQPTCFPSICAVTANKASLWHQRMG 145

Query: 78  -------------------------------------------------------IDIWG 137
                                                                  +DIWG
Sbjct: 146 HPSTETLNSLQIPLFLKPSTVDKMSHCTICPLAKQRKLSFTSNNHLSSNAFDLIHVDIWG 205

Query: 138 PFSTETYSGYSYFLTIVDDATRYTWVFMLKLKSDVISIIPQFFKLIETQYGKAIKQVRSD 197
           PFSTETYS YSYFLTIVDDATRYTWVFMLKLKSDVISIIP FFKLIETQYGKAIK+VRSD
Sbjct: 206 PFSTETYSEYSYFLTIVDDATRYTWVFMLKLKSDVISIIPHFFKLIETQYGKAIKKVRSD 265

Query: 198 NAPELKFTTFFEQKGVIHQYSCVQCPQQNSVVERKHQHILNTARALYFQSQVPLNFWGDC 255
           NA +LKFTTFFEQKGVIHQYSCVQ PQQNSVVE+KHQHILNTARALYFQSQVPLNFWGDC
Sbjct: 266 NAHKLKFTTFFEQKGVIHQYSCVQWPQQNSVVEKKHQHILNTARALYFQSQVPLNFWGDC 325

BLAST of Cmc05g0128741 vs. NCBI nr
Match: KAA0042148.1 (putative retroelement pol polyprotein [Cucumis melo var. makuwa] >TYK26723.1 putative retroelement pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 292.7 bits (748), Expect = 3.0e-75
Identity = 159/274 (58.03%), Postives = 179/274 (65.33%), Query Frame = 0

Query: 38  KKIGSAKLFQGLYILDQP--TYFPSICAV------------------------------T 97
           ++IGSAKLFQGLYILDQ     +P +  +                              T
Sbjct: 176 ERIGSAKLFQGLYILDQTFLQLYPFVLLLIIKHPYGINSWAIPLLIAYSLQNLLHLKSST 235

Query: 98  TNKAS------LWHQR-------------------IDIWGPFSTETYSGYSYFLTIVDDA 157
            NK S      L  QR                   + IWGPFST+T++GY YFLTIVDDA
Sbjct: 236 VNKVSHCTMCPLAKQRKLSFTSNNHLSSNAFDLIHVHIWGPFSTQTHAGYPYFLTIVDDA 295

Query: 158 TRYTWVFMLKLKSDVISIIPQFFKLIETQYGKAIKQVRSDNAPELKFTTFFEQKGVIHQY 217
           T YT +FMLK  SDV+ I+PQFFKLIETQ GK IKQ+RSDNAPELKFT FFEQK      
Sbjct: 296 THYTGIFMLKHMSDVVFIVPQFFKLIETQRGKTIKQMRSDNAPELKFTEFFEQKRSGTSI 355

Query: 218 SCVQCPQQNSVVERKHQHILNTARALYFQSQVPLNFWGDCILTAIYLINRTPSKLLQWKS 255
              +C QQNS VERKHQHILNTAR  YFQSQVPL FWG+CILTAIYLINRTPS LLQW+ 
Sbjct: 356 LMCRCAQQNSAVERKHQHILNTARVQYFQSQVPLTFWGECILTAIYLINRTPSMLLQWEF 415

BLAST of Cmc05g0128741 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 8.0e-31
Identity = 70/178 (39.33%), Postives = 97/178 (54.49%), Query Frame = 0

Query: 77  DIWGPFSTETYSGYSYFLTIVDDATRYTWVFMLKLKSDVISIIPQFFKLIETQYGKAIKQ 136
           D+W      ++  Y Y++  VD  TRYTW++ LK KS V      F  L+E ++   I  
Sbjct: 530 DVWSS-PILSHDNYRYYVIFVDHFTRYTWLYPLKQKSQVKETFITFKNLLENRFQTRIGT 589

Query: 137 VRSDNAPE-LKFTTFFEQKGVIHQYSCVQCPQQNSVVERKHQHILNTARALYFQSQVPLN 196
             SDN  E +    +F Q G+ H  S    P+ N + ERKH+HI+ T   L   + +P  
Sbjct: 590 FYSDNGGEFVALWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVETGLTLLSHASIPKT 649

Query: 197 FWGDCILTAIYLINRTPSKLLQWKSPFQKLNNTIPDYNSLKVFGSLCYASSLPYNRSK 254
           +W      A+YLINR P+ LLQ +SPFQKL  T P+Y+ L+VFG  CY    PYN+ K
Sbjct: 650 YWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCACYPWLRPYNQHK 706

BLAST of Cmc05g0128741 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.7e-29
Identity = 70/178 (39.33%), Postives = 93/178 (52.25%), Query Frame = 0

Query: 77  DIWGPFSTETYSGYSYFLTIVDDATRYTWVFMLKLKSDVISIIPQFFKLIETQYGKAIKQ 136
           D+W      +   Y Y++  VD  TRYTW++ LK KS V      F  L+E ++   I  
Sbjct: 509 DVWSS-PILSIDNYRYYVIFVDHFTRYTWLYPLKQKSQVKDTFIIFKSLVENRFQTRIGT 568

Query: 137 VRSDNAPE-LKFTTFFEQKGVIHQYSCVQCPQQNSVVERKHQHILNTARALYFQSQVPLN 196
           + SDN  E +    +  Q G+ H  S    P+ N + ERKH+HI+     L   + VP  
Sbjct: 569 LYSDNGGEFVVLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVEMGLTLLSHASVPKT 628

Query: 197 FWGDCILTAIYLINRTPSKLLQWKSPFQKLNNTIPDYNSLKVFGSLCYASSLPYNRSK 254
           +W      A+YLINR P+ LLQ +SPFQKL    P+Y  LKVFG  CY    PYNR K
Sbjct: 629 YWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLRPYNRHK 685

BLAST of Cmc05g0128741 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.5e-29
Identity = 64/180 (35.56%), Postives = 102/180 (56.67%), Query Frame = 0

Query: 77  DIWGPFSTETYSGYSYFLTIVDDATRYTWVFMLKLKSDVISIIPQFFKLIETQYGKAIKQ 136
           D+ GP   E+  G  YF+T +DDA+R  WV++LK K  V  +  +F  L+E + G+ +K+
Sbjct: 487 DVCGPMEIESMGGNKYFVTFIDDASRKLWVYILKTKDQVFQVFQKFHALVERETGRKLKR 546

Query: 137 VRSDNAPEL---KFTTFFEQKGVIHQYSCVQCPQQNSVVERKHQHILNTARALYFQSQVP 196
           +RSDN  E    +F  +    G+ H+ +    PQ N V ER ++ I+   R++   +++P
Sbjct: 547 LRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMAKLP 606

Query: 197 LNFWGDCILTAIYLINRTPSKLLQWKSPFQKLNNTIPDYNSLKVFGSLCYASSLPYNRSK 254
            +FWG+ + TA YLINR+PS  L ++ P +   N    Y+ LKVFG   +A      R+K
Sbjct: 607 KSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQRTK 666

BLAST of Cmc05g0128741 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 100.1 bits (248), Expect = 3.7e-20
Identity = 58/181 (32.04%), Postives = 90/181 (49.72%), Query Frame = 0

Query: 68  KASLWHQRIDIWGPFSTETYSGYSYFLTIVDDATRYTWVFMLKLKSDVISIIPQFFKLIE 127
           K  L+    D+ GP +  T    +YF+  VD  T Y   +++K KSDV S+   F    E
Sbjct: 478 KRPLFVVHSDVCGPITPVTLDDKNYFVIFVDQFTHYCVTYLIKYKSDVFSMFQDFVAKSE 537

Query: 128 TQYGKAIKQVRSDNAPEL---KFTTFFEQKGVIHQYSCVQCPQQNSVVERKHQHILNTAR 187
             +   +  +  DN  E    +   F  +KG+ +  +    PQ N V ER  + I   AR
Sbjct: 538 AHFNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKAR 597

Query: 188 ALYFQSQVPLNFWGDCILTAIYLINRTPSKLL--QWKSPFQKLNNTIPDYNSLKVFGSLC 244
            +   +++  +FWG+ +LTA YLINR PS+ L    K+P++  +N  P    L+VFG+  
Sbjct: 598 TMVSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGATV 657

BLAST of Cmc05g0128741 vs. ExPASy Swiss-Prot
Match: P47024 (Transposon Ty4-J Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY4B-J PE=3 SV=3)

HSP 1 Score: 60.1 bits (144), Expect = 4.3e-08
Identity = 40/149 (26.85%), Postives = 71/149 (47.65%), Query Frame = 0

Query: 76  IDIWGPFSTETYSGYSYFLTIVDDATRY--TWVFMLKLKSDVISIIPQFFKLIETQYGKA 135
           +DI+GP S+       Y L +VD+ TRY  T     K    +++ + +  + +ETQ+ + 
Sbjct: 630 MDIFGPVSSSNADTKRYMLIMVDNNTRYCMTSTHFNKNAETILAQVRKNIQYVETQFDRK 689

Query: 136 IKQVRSDNAPEL---KFTTFFEQKGVIHQYSCVQCPQQNSVVERKHQHILNTARALYFQS 195
           ++++ SD   E    +   +F  KG+ H  +  Q    N   ER  + I+  A  L  QS
Sbjct: 690 VREINSDRGTEFTNDQIEEYFISKGIHHILTSTQDHAANGRAERYIRTIITDATTLLRQS 749

Query: 196 QVPLNFWGDCILTAI----YLINRTPSKL 216
            + + FW   + +A     YL +++  KL
Sbjct: 750 NLRVKFWEYAVTSATNIRNYLEHKSTGKL 778

BLAST of Cmc05g0128741 vs. ExPASy TrEMBL
Match: A0A5A7SRC2 (Retroelement pol polyprotein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G00130 PE=4 SV=1)

HSP 1 Score: 466.1 bits (1198), Expect = 9.5e-128
Identity = 222/223 (99.55%), Postives = 223/223 (100.00%), Query Frame = 0

Query: 32  QDKYTSKKIGSAKLFQGLYILDQPTYFPSICAVTTNKASLWHQRIDIWGPFSTETYSGYS 91
           +DKYTSKKIGSAKLFQGLYILDQPTYFPSICAVTTNKASLWHQRIDIWGPFSTETYSGYS
Sbjct: 136 KDKYTSKKIGSAKLFQGLYILDQPTYFPSICAVTTNKASLWHQRIDIWGPFSTETYSGYS 195

Query: 92  YFLTIVDDATRYTWVFMLKLKSDVISIIPQFFKLIETQYGKAIKQVRSDNAPELKFTTFF 151
           YFLTIVDDATRYTWVFMLKLKSDVISIIPQFFKLIETQYGKAIKQVRSDNAPELKFTTFF
Sbjct: 196 YFLTIVDDATRYTWVFMLKLKSDVISIIPQFFKLIETQYGKAIKQVRSDNAPELKFTTFF 255

Query: 152 EQKGVIHQYSCVQCPQQNSVVERKHQHILNTARALYFQSQVPLNFWGDCILTAIYLINRT 211
           EQKGVIHQYSCVQCPQQNSVVERKHQHILNTARALYFQSQVPLNFWGDCILTAIYLINRT
Sbjct: 256 EQKGVIHQYSCVQCPQQNSVVERKHQHILNTARALYFQSQVPLNFWGDCILTAIYLINRT 315

Query: 212 PSKLLQWKSPFQKLNNTIPDYNSLKVFGSLCYASSLPYNRSKF 255
           PSKLLQWKSPFQKLNNTIPDYNSLKVFGSLCYASSLPYNRSKF
Sbjct: 316 PSKLLQWKSPFQKLNNTIPDYNSLKVFGSLCYASSLPYNRSKF 358

BLAST of Cmc05g0128741 vs. ExPASy TrEMBL
Match: A0A5D3CZP1 (Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00100 PE=4 SV=1)

HSP 1 Score: 463.0 bits (1190), Expect = 8.1e-127
Identity = 221/223 (99.10%), Postives = 222/223 (99.55%), Query Frame = 0

Query: 32  QDKYTSKKIGSAKLFQGLYILDQPTYFPSICAVTTNKASLWHQRIDIWGPFSTETYSGYS 91
           +DKYTSKKIGSAKLFQGLYILDQPTYFPSICAVTTNKASLWHQRIDIWGPFSTETYSGYS
Sbjct: 136 KDKYTSKKIGSAKLFQGLYILDQPTYFPSICAVTTNKASLWHQRIDIWGPFSTETYSGYS 195

Query: 92  YFLTIVDDATRYTWVFMLKLKSDVISIIPQFFKLIETQYGKAIKQVRSDNAPELKFTTFF 151
           YFLTIVDDATRYTWVFMLKLKSDVISIIPQFFKLIETQYGKAIKQVRSDNAPELKFTTFF
Sbjct: 196 YFLTIVDDATRYTWVFMLKLKSDVISIIPQFFKLIETQYGKAIKQVRSDNAPELKFTTFF 255

Query: 152 EQKGVIHQYSCVQCPQQNSVVERKHQHILNTARALYFQSQVPLNFWGDCILTAIYLINRT 211
           EQKGVIHQYSCVQCPQQNSVVERKHQHILNTARALYFQSQVPLNFWGDCILTAIYLINRT
Sbjct: 256 EQKGVIHQYSCVQCPQQNSVVERKHQHILNTARALYFQSQVPLNFWGDCILTAIYLINRT 315

Query: 212 PSKLLQWKSPFQKLNNTIPDYNSLKVFGSLCYASSLPYNRSKF 255
           PSKLLQWKS FQKLNNTIPDYNSLKVFGSLCYASSLPYNRSKF
Sbjct: 316 PSKLLQWKSSFQKLNNTIPDYNSLKVFGSLCYASSLPYNRSKF 358

BLAST of Cmc05g0128741 vs. ExPASy TrEMBL
Match: A0A5D3D1N3 (Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00250 PE=4 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 5.8e-109
Identity = 207/294 (70.41%), Postives = 218/294 (74.15%), Query Frame = 0

Query: 18  SSLSVQFFTDICIIQDKYTSKKIGSAKLFQGLYILDQPTYFPSICAVTTNKASLWHQR-- 77
           SS S    T    + DKYTSKKIGSAKLFQGLYILDQPT FPSICAVT NKASLWHQR  
Sbjct: 86  SSFSPAINTPAFDLVDKYTSKKIGSAKLFQGLYILDQPTCFPSICAVTANKASLWHQRMG 145

Query: 78  -------------------------------------------------------IDIWG 137
                                                                  +DIWG
Sbjct: 146 HPSTETLNSLQIPLFLKPSTVDKMSHCTICPLAKQRKLSFTSNNHLSSNAFDLIHVDIWG 205

Query: 138 PFSTETYSGYSYFLTIVDDATRYTWVFMLKLKSDVISIIPQFFKLIETQYGKAIKQVRSD 197
           PFSTETYS YSYFLTIVDDATRYTWVFMLKLKSDVISIIP FFKLIETQYGKAIK+VRSD
Sbjct: 206 PFSTETYSEYSYFLTIVDDATRYTWVFMLKLKSDVISIIPHFFKLIETQYGKAIKKVRSD 265

Query: 198 NAPELKFTTFFEQKGVIHQYSCVQCPQQNSVVERKHQHILNTARALYFQSQVPLNFWGDC 255
           NA +LKFTTFFEQKGVIHQYSCVQ PQQNSVVE+KHQHILNTARALYFQSQVPLNFWGDC
Sbjct: 266 NAHKLKFTTFFEQKGVIHQYSCVQWPQQNSVVEKKHQHILNTARALYFQSQVPLNFWGDC 325

BLAST of Cmc05g0128741 vs. ExPASy TrEMBL
Match: A0A5A7VQN7 (Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G002210 PE=4 SV=1)

HSP 1 Score: 403.7 bits (1036), Expect = 5.8e-109
Identity = 207/294 (70.41%), Postives = 218/294 (74.15%), Query Frame = 0

Query: 18  SSLSVQFFTDICIIQDKYTSKKIGSAKLFQGLYILDQPTYFPSICAVTTNKASLWHQR-- 77
           SS S    T    + DKYTSKKIGSAKLFQGLYILDQPT FPSICAVT NKASLWHQR  
Sbjct: 86  SSFSPAINTPAFDLVDKYTSKKIGSAKLFQGLYILDQPTCFPSICAVTANKASLWHQRMG 145

Query: 78  -------------------------------------------------------IDIWG 137
                                                                  +DIWG
Sbjct: 146 HPSTETLNSLQIPLFLKPSTVDKMSHCTICPLAKQRKLSFTSNNHLSSNAFDLIHVDIWG 205

Query: 138 PFSTETYSGYSYFLTIVDDATRYTWVFMLKLKSDVISIIPQFFKLIETQYGKAIKQVRSD 197
           PFSTETYS YSYFLTIVDDATRYTWVFMLKLKSDVISIIP FFKLIETQYGKAIK+VRSD
Sbjct: 206 PFSTETYSEYSYFLTIVDDATRYTWVFMLKLKSDVISIIPHFFKLIETQYGKAIKKVRSD 265

Query: 198 NAPELKFTTFFEQKGVIHQYSCVQCPQQNSVVERKHQHILNTARALYFQSQVPLNFWGDC 255
           NA +LKFTTFFEQKGVIHQYSCVQ PQQNSVVE+KHQHILNTARALYFQSQVPLNFWGDC
Sbjct: 266 NAHKLKFTTFFEQKGVIHQYSCVQWPQQNSVVEKKHQHILNTARALYFQSQVPLNFWGDC 325

BLAST of Cmc05g0128741 vs. ExPASy TrEMBL
Match: A0A5D3DT02 (Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G00070 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 1.4e-75
Identity = 159/274 (58.03%), Postives = 179/274 (65.33%), Query Frame = 0

Query: 38  KKIGSAKLFQGLYILDQP--TYFPSICAV------------------------------T 97
           ++IGSAKLFQGLYILDQ     +P +  +                              T
Sbjct: 176 ERIGSAKLFQGLYILDQTFLQLYPFVLLLIIKHPYGINSWAIPLLIAYSLQNLLHLKSST 235

Query: 98  TNKAS------LWHQR-------------------IDIWGPFSTETYSGYSYFLTIVDDA 157
            NK S      L  QR                   + IWGPFST+T++GY YFLTIVDDA
Sbjct: 236 VNKVSHCTMCPLAKQRKLSFTSNNHLSSNAFDLIHVHIWGPFSTQTHAGYPYFLTIVDDA 295

Query: 158 TRYTWVFMLKLKSDVISIIPQFFKLIETQYGKAIKQVRSDNAPELKFTTFFEQKGVIHQY 217
           T YT +FMLK  SDV+ I+PQFFKLIETQ GK IKQ+RSDNAPELKFT FFEQK      
Sbjct: 296 THYTGIFMLKHMSDVVFIVPQFFKLIETQRGKTIKQMRSDNAPELKFTEFFEQKRSGTSI 355

Query: 218 SCVQCPQQNSVVERKHQHILNTARALYFQSQVPLNFWGDCILTAIYLINRTPSKLLQWKS 255
              +C QQNS VERKHQHILNTAR  YFQSQVPL FWG+CILTAIYLINRTPS LLQW+ 
Sbjct: 356 LMCRCAQQNSAVERKHQHILNTARVQYFQSQVPLTFWGECILTAIYLINRTPSMLLQWEF 415

BLAST of Cmc05g0128741 vs. TAIR 10
Match: ATMG00710.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein )

HSP 1 Score: 42.4 bits (98), Expect = 6.5e-04
Identity = 18/65 (27.69%), Postives = 35/65 (53.85%), Query Frame = 0

Query: 179 ILNTARALYFQSQVPLNFWGDCILTAIYLINRTPSKLLQWKSPFQKLNNTIPDYNSLKVF 238
           I+   R++  +  +P  F  D   TA+++IN+ PS  + +  P +    ++P Y+ L+ F
Sbjct: 5   IIEKVRSMLCECGLPKTFRADAANTAVHIINKYPSTAINFHVPDEVWFQSVPTYSYLRRF 64

Query: 239 GSLCY 244
           G + Y
Sbjct: 65  GCVAY 69

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0031937.12.0e-12799.55retroelement pol polyprotein-like [Cucumis melo var. makuwa][more]
TYK16758.11.7e-12699.10Copia protein [Cucumis melo var. makuwa][more]
KAA0068025.11.2e-10870.41Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa][more]
TYK18103.11.2e-10870.41Cysteine-rich RLK (receptor-like protein kinase) 8 [Cucumis melo var. makuwa][more]
KAA0042148.13.0e-7558.03putative retroelement pol polyprotein [Cucumis melo var. makuwa] >TYK26723.1 put... [more]
Match NameE-valueIdentityDescription
Q94HW28.0e-3139.33Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT945.7e-2939.33Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P109787.5e-2935.56Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
P041463.7e-2032.04Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
P470244.3e-0826.85Transposon Ty4-J Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20... [more]
Match NameE-valueIdentityDescription
A0A5A7SRC29.5e-12899.55Retroelement pol polyprotein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5D3CZP18.1e-12799.10Copia protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00100 P... [more]
A0A5D3D1N35.8e-10970.41Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa O... [more]
A0A5A7VQN75.8e-10970.41Cysteine-rich RLK (Receptor-like protein kinase) 8 OS=Cucumis melo var. makuwa O... [more]
A0A5D3DT021.4e-7558.03Putative retroelement pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
Match NameE-valueIdentityDescription
ATMG00710.16.5e-0427.69Polynucleotidyl transferase, ribonuclease H-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 63..238
e-value: 3.5E-34
score: 119.8
NoneNo IPR availablePANTHERPTHR11439:SF324RIBONUCLEASE H-LIKE DOMAIN, GAG-PRE-INTEGRASE DOMAIN, GAG-POLYPEPTIDE OF LTR COPIA-TYPE-RELATEDcoord: 77..253
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 77..253
IPR001584Integrase, catalytic corePROSITEPS50994INTEGRASEcoord: 55..229
score: 15.725669
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 74..223

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc05g0128741.1Cmc05g0128741.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
molecular_function GO:0003676 nucleic acid binding