Cmc05g0128711 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc05g0128711
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	CMiso1.1chr05: 6397036 .. 6397812 (-)
RNA-Seq Expression	Cmc05g0128711
Synteny	Cmc05g0128711

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAGCCTTCTTAATGAACTACAAATTAATGCTCCATCTCCAGCCCTCCTTTTTTGTGACAATCAAGCCACCATCTACATTGCAAATAATCCCATGTTTCATGAAAGAACCAAACATATCGAACTAGACTGTCATTTTGTTCGAGATAGAATAACAGATGGATCCATCAAGCTGTTACCAGTTAGATCTTCCAATCAGCTTGCAGATGTGTTTACGAAGCCTCTTCCAGCAAGCATCTTGTTTCCATTAATAGGCAAGATGGGCGTCGAAGACATATTTGCCCCATCTTGAGGGGGAGTATTAAATAGTTACATTCTGTTTTATATTGTTAATCAGTTTTGATAACTGCCCCATATTGTAACTAATTATCTCTCTTTCTCATATGTGTATAAATACCATTGAATGCACCATAAATAAAATGAGAAAGTCATTTATATCTTTTACTTTTCCAATATAATCTTTCCGTCCCAAACACATATTATAATAATACTATAATAATAATTCTTCCCTTAAACATATATTATTATAATATTACTATCATAATCCTTCCCCAAGTAGACATTATTATAACACTACCTTTCATATTCATTCCCCCAAACACATATTATCGTAACACTAGGATTATCATAATCCTTTTCTCCCATAACTCTTTCCTTCCTCCAAACATACCCTTATTTAATAGAACAATACCTCAAAATAACAATTTTACTGAACAATAAAATAATTTAACATTCACAAATCATAAGTTTGAGTTGATCGAGTTTTTGAACAACACTAC

mRNA sequence

GTAGCCTTCTTAATGAACTACAAATTAATGCTCCATCTCCAGCCCTCCTTTTTTGTGACAATCAAGCCACCATCTACATTGCAAATAATCCCATGTTTCATGAAAGAACCAAACATATCGAACTAGACTGTCATTTTGTTCGAGATAGAATAACAGATGGATCCATCAAGCTGTTACCAGTTAGATCTTCCAATCAGCTTGCAGATGTGTTTACGAAGCCTCTTCCAGCAAGCATCTTGTTTCCATTAATAGGCAAGATGGGCGTCGAAGACATATTTGCCCCATCTTGAGGGGGAGTATTAAATAGTTACATTCTGTTTTATATTGTTAATCAGTTTTGATAACTGCCCCATATTGTAACTAATTATCTCTCTTTCTCATATGTGTATAAATACCATTGAATGCACCATAAATAAAATGAGAAAGTCATTTATATCTTTTACTTTTCCAATATAATCTTTCCGTCCCAAACACATATTATAATAATACTATAATAATAATTCTTCCCTTAAACATATATTATTATAATATTACTATCATAATCCTTCCCCAAGTAGACATTATTATAACACTACCTTTCATATTCATTCCCCCAAACACATATTATCGTAACACTAGGATTATCATAATCCTTTTCTCCCATAACTCTTTCCTTCCTCCAAACATACCCTTATTTAATAGAACAATACCTCAAAATAACAATTTTACTGAACAATAAAATAATTTAACATTCACAAATCATAAGTTTGAGTTGATCGAGTTTTTGAACAACACTAC

Coding sequence (CDS)

ATGTTTCATGAAAGAACCAAACATATCGAACTAGACTGTCATTTTGTTCGAGATAGAATAACAGATGGATCCATCAAGCTGTTACCAGTTAGATCTTCCAATCAGCTTGCAGATGTGTTTACGAAGCCTCTTCCAGCAAGCATCTTGTTTCCATTAATAGGCAAGATGGGCGTCGAAGACATATTTGCCCCATCTTGA

Protein sequence

MFHERTKHIELDCHFVRDRITDGSIKLLPVRSSNQLADVFTKPLPASILFPLIGKMGVEDIFAPS

Homology

[Close]

BLAST of Cmc05g0128711 vs. NCBI nr
Match: TYK28978.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 119.4 bits (298), Expect = 1.2e-23
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 1   MFHERTKHIELDCHFVRDRITDGSIKLLPVRSSNQLADVFTKPLPASILFPLIGKMGVED 60
           MFHERTKHIELDCHFVRDR TDGSIKLLPV+SS+ L DVFTKPLPASILF LIGKMGV+D
Sbjct: 76  MFHERTKHIELDCHFVRDRKTDGSIKLLPVQSSSLLVDVFTKPLPASILFHLIGKMGVQD 135

Query: 61  IFAP 65
           IFAP
Sbjct: 136 IFAP 139

[Close]

BLAST of Cmc05g0128711 vs. NCBI nr
Match: PON99369.1 (hypothetical protein TorRG33x02_049120 [Trema orientale])

HSP 1 Score: 109.4 bits (272), Expect = 1.2e-20
Identity = 46/64 (71.88%), Postives = 58/64 (90.62%), Query Frame = 0


Query: 2   FHERTKHIELDCHFVRDRITDGSIKLLPVRSSNQLADVFTKPLPASILFPLIGKMGVEDI 61
           FHERTKHIELDCHFVRD+++ GS+KLLP+RS +QLAD+FTKPL +S+LFPL+ KM V DI
Sbjct: 180 FHERTKHIELDCHFVRDKVSQGSVKLLPIRSQHQLADIFTKPLSSSLLFPLLSKMAVHDI 239

Query: 62  FAPS 66
           ++PS
Sbjct: 240 YSPS 243

[Close]

BLAST of Cmc05g0128711 vs. NCBI nr
Match: XP_022887164.1 (uncharacterized protein LOC111403045 [Olea europaea var. sylvestris])

HSP 1 Score: 103.2 bits (256), Expect = 8.6e-19
Identity = 44/64 (68.75%), Postives = 56/64 (87.50%), Query Frame = 0


Query: 1   MFHERTKHIELDCHFVRDRITDGSIKLLPVRSSNQLADVFTKPLPASILFPLIGKMGVED 60
           +FHERTKHIE+DCH++RD++T+GSIKLLPVR+ NQLADVFTK LP++ LFPL+ KM V D
Sbjct: 327 IFHERTKHIEIDCHYIRDKVTEGSIKLLPVRTQNQLADVFTKALPSNSLFPLLSKMAVTD 386

Query: 61  IFAP 65
           +  P
Sbjct: 387 LRRP 390

[Close]

BLAST of Cmc05g0128711 vs. NCBI nr
Match: XP_022888908.1 (uncharacterized protein LOC111404314 [Olea europaea var. sylvestris])

HSP 1 Score: 102.1 bits (253), Expect = 1.9e-18
Identity = 43/65 (66.15%), Postives = 55/65 (84.62%), Query Frame = 0


Query: 1   MFHERTKHIELDCHFVRDRITDGSIKLLPVRSSNQLADVFTKPLPASILFPLIGKMGVED 60
           +FHERTKHIE+DCHF+RDRI DG +KL+PV++ NQL DVFTKPLPA++LFPL+ KM + +
Sbjct: 328 IFHERTKHIEIDCHFIRDRINDGFVKLMPVQTQNQLTDVFTKPLPANLLFPLMSKMSIIN 387

Query: 61  IFAPS 66
              PS
Sbjct: 388 PHCPS 392

[Close]

BLAST of Cmc05g0128711 vs. NCBI nr
Match: RVW99848.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 101.7 bits (252), Expect = 2.5e-18
Identity = 43/64 (67.19%), Postives = 55/64 (85.94%), Query Frame = 0


Query: 2   FHERTKHIELDCHFVRDRITDGSIKLLPVRSSNQLADVFTKPLPASILFPLIGKMGVEDI 61
           FHERTKHIE+DCHFV D++ DG IKL+P+RS +QLAD+FTK  P+S+LFPL+ KM V+DI
Sbjct: 618 FHERTKHIEIDCHFVHDKVVDGFIKLIPLRSQHQLADIFTKAWPSSLLFPLLSKMAVKDI 677

Query: 62  FAPS 66
            +PS
Sbjct: 678 HSPS 681

[Close]

BLAST of Cmc05g0128711 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-07
Identity = 25/56 (44.64%), Postives = 38/56 (67.86%), Query Frame = 0


Query: 3    HERTKHIELDCHFVRDRITDGSIKLLPVRSSNQLADVFTKPLPASILFPLIGKMGV 59
            H+R KHI++  HF R+++ +  I L  + + NQLAD+FTKPLPA+    L  K+G+
Sbjct: 1345 HKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400

[Close]

BLAST of Cmc05g0128711 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 2.1e-07
Identity = 23/58 (39.66%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 1    MFHERTKHIELDCHFVRDRITDGSIKLLPVRSSNQLADVFTKPLPASILFPLIGKMGV 59
            +FH R KHI +D HF+R+++  G+++++ V + +QLAD  TKPL  +       K+GV
Sbjct: 1403 VFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRTAFQNFASKIGV 1460

[Close]

BLAST of Cmc05g0128711 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 6.0e-07
Identity = 24/58 (41.38%), Postives = 37/58 (63.79%), Query Frame = 0


Query: 1    MFHERTKHIELDCHFVRDRITDGSIKLLPVRSSNQLADVFTKPLPASILFPLIGKMGV 59
            +FH R KHI LD HF+R+++  G+++++ V + +QLAD  TKPL          K+GV
Sbjct: 1386 VFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGV 1443

[Close]

BLAST of Cmc05g0128711 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 9.5e-05
Identity = 18/45 (40.00%), Postives = 32/45 (71.11%), Query Frame = 0


Query: 1    MFHERTKHIELDCHFVRDRITDGSIKLLPVRSSNQLADVFTKPLP 46
            M+H RTKHI++  H++R+ + D S+K+L + ++   AD+ TK +P
Sbjct: 1268 MYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVP 1312

[Close]

BLAST of Cmc05g0128711 vs. ExPASy TrEMBL
Match: A0A5D3DZU4 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00760 PE=4 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 5.6e-24
Identity = 57/64 (89.06%), Postives = 60/64 (93.75%), Query Frame = 0


Query: 1   MFHERTKHIELDCHFVRDRITDGSIKLLPVRSSNQLADVFTKPLPASILFPLIGKMGVED 60
           MFHERTKHIELDCHFVRDR TDGSIKLLPV+SS+ L DVFTKPLPASILF LIGKMGV+D
Sbjct: 76  MFHERTKHIELDCHFVRDRKTDGSIKLLPVQSSSLLVDVFTKPLPASILFHLIGKMGVQD 135

Query: 61  IFAP 65
           IFAP
Sbjct: 136 IFAP 139

[Close]

BLAST of Cmc05g0128711 vs. ExPASy TrEMBL
Match: A0A2P5FNK4 (Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_049120 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 5.8e-21
Identity = 46/64 (71.88%), Postives = 58/64 (90.62%), Query Frame = 0


Query: 2   FHERTKHIELDCHFVRDRITDGSIKLLPVRSSNQLADVFTKPLPASILFPLIGKMGVEDI 61
           FHERTKHIELDCHFVRD+++ GS+KLLP+RS +QLAD+FTKPL +S+LFPL+ KM V DI
Sbjct: 180 FHERTKHIELDCHFVRDKVSQGSVKLLPIRSQHQLADIFTKPLSSSLLFPLLSKMAVHDI 239

Query: 62  FAPS 66
           ++PS
Sbjct: 240 YSPS 243

[Close]

BLAST of Cmc05g0128711 vs. ExPASy TrEMBL
Match: A0A438IT12 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_3215 PE=4 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-18
Identity = 43/64 (67.19%), Postives = 55/64 (85.94%), Query Frame = 0


Query: 2   FHERTKHIELDCHFVRDRITDGSIKLLPVRSSNQLADVFTKPLPASILFPLIGKMGVEDI 61
           FHERTKHIE+DCHFV D++ DG IKL+P+RS +QLAD+FTK  P+S+LFPL+ KM V+DI
Sbjct: 618 FHERTKHIEIDCHFVHDKVVDGFIKLIPLRSQHQLADIFTKAWPSSLLFPLLSKMAVKDI 677

Query: 62  FAPS 66
            +PS
Sbjct: 678 HSPS 681

[Close]

BLAST of Cmc05g0128711 vs. ExPASy TrEMBL
Match: A0A6J1DI66 (uncharacterized protein LOC111020712 OS=Momordica charantia OX=3673 GN=LOC111020712 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.5e-16
Identity = 43/64 (67.19%), Postives = 54/64 (84.38%), Query Frame = 0


Query: 2   FHERTKHIELDCHFVRDRITDGSIKLLPVRSSNQLADVFTKPLPASILFPLIGKMGVEDI 61
           FHERTKHIE+DCHFVRD+I+DG +KLLP+RSS+QLAD+FTK L +  L  L+ KMGV +I
Sbjct: 139 FHERTKHIEIDCHFVRDKISDGFLKLLPIRSSSQLADMFTKALGSPTLKFLMSKMGVYNI 198

Query: 62  FAPS 66
           + PS
Sbjct: 199 YTPS 202

[Close]

BLAST of Cmc05g0128711 vs. ExPASy TrEMBL
Match: A0A803QGJ5 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 5.6e-16
Identity = 40/64 (62.50%), Postives = 52/64 (81.25%), Query Frame = 0


Query: 2   FHERTKHIELDCHFVRDRITDGSIKLLPVRSSNQLADVFTKPLPASILFPLIGKMGVEDI 61
           FHERTKHIELDCHF+R++IT  +I+L+PV S+ QLAD FTKPLP++IL   + KM + DI
Sbjct: 847 FHERTKHIELDCHFIREKITKSAIRLIPVSSTLQLADAFTKPLPSTILTSHLSKMAIHDI 906

Query: 62  FAPS 66
           + PS
Sbjct: 907 YGPS 910

The following BLAST results are available for this feature:

BLAST of Cmc05g0128711 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK28978.1	1.2e-23	89.06	putative mitochondrial protein [Cucumis melo var. makuwa]	[more]
PON99369.1	1.2e-20	71.88	hypothetical protein TorRG33x02_049120 [Trema orientale]	[more]
XP_022887164.1	8.6e-19	68.75	uncharacterized protein LOC111403045 [Olea europaea var. sylvestris]	[more]
XP_022888908.1	1.9e-18	66.15	uncharacterized protein LOC111404314 [Olea europaea var. sylvestris]	[more]
RVW99848.1	2.5e-18	67.19	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]

BLAST of Cmc05g0128711 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04146	1.2e-07	44.64	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	2.1e-07	39.66	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	6.0e-07	41.38	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	9.5e-05	40.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Cmc05g0128711 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DZU4	5.6e-24	89.06	Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A2P5FNK4	5.8e-21	71.88	Uncharacterized protein OS=Trema orientale OX=63057 GN=TorRG33x02_049120 PE=4 SV...	[more]
A0A438IT12	1.2e-18	67.19	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A6J1DI66	2.5e-16	67.19	uncharacterized protein LOC111020712 OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A803QGJ5	5.6e-16	62.50	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of Cmc05g0128711 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF343	SUBFAMILY NOT NAMED	coord: 1..48
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 1..48
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 1..46 e-value: 3.33263E-23 score: 83.2865

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc05g0128711.1	Cmc05g0128711.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding