Cmc05g0128341 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc05g0128341
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	4,4'-diapophytoene desaturase (4,4'-diaponeurosporene-forming)
Location	CMiso1.1chr05: 6007223 .. 6007651 (+)
RNA-Seq Expression	Cmc05g0128341
Synteny	Cmc05g0128341

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTTCAAAGTTCTTGTTTTTGATACTCTCCATTGATCGTTTCAACCTCCTCTCTCCCTCAGCCGCAAGGAGTAGCAATTTTCCCATACACAAAATTTGAATCTTCTTGTGTTTGTATATTCATACGTATGCTCTAATATAACTTAATTTCCTTACTGTTTTCAAGACTAATACAATTACTGAATCGGTTTAATATGGAAAAGGGTAGGCGAAGATGAAGGTGGCGGTGATCGGAGCTGGGATCAACGGTCTGATTTCTGCTTATGTTGTAGCCAAAGCTGGAGTAGAGGTGGTGTTGTTTGAGAAGGAAGAGTACTTAGGCAGCCATCATTTTAGAACAATAAATTTTGATGGCTTTGATTTGGACCTCGGCATCATGCTCTTCAATCCAGTTATTATCTCTTTCTCACTTCTTTTAGGTTTAGTTTGA

mRNA sequence

TTTTCAAAGTTCTTGTTTTTGATACTCTCCATTGATCGTTTCAACCTCCTCTCTCCCTCAGCCGCAAGGAGTAGCAATTTTCCCATACACAAAATTTGAATCTTCTTGTGTTTGTATATTCATACGGTAGGCGAAGATGAAGGTGGCGGTGATCGGAGCTGGGATCAACGGTCTGATTTCTGCTTATGTTGTAGCCAAAGCTGGAGTAGAGGTGGTGTTGTTTGAGAAGGAAGAGTACTTAGGCAGCCATCATTTTAGAACAATAAATTTTGATGGCTTTGATTTGGACCTCGGCATCATGCTCTTCAATCCAGTTATTATCTCTTTCTCACTTCTTTTAGGTTTAGTTTGA

Coding sequence (CDS)

ATGAAGGTGGCGGTGATCGGAGCTGGGATCAACGGTCTGATTTCTGCTTATGTTGTAGCCAAAGCTGGAGTAGAGGTGGTGTTGTTTGAGAAGGAAGAGTACTTAGGCAGCCATCATTTTAGAACAATAAATTTTGATGGCTTTGATTTGGACCTCGGCATCATGCTCTTCAATCCAGTTATTATCTCTTTCTCACTTCTTTTAGGTTTAGTTTGA

Protein sequence

MKVAVIGAGINGLISAYVVAKAGVEVVLFEKEEYLGSHHFRTINFDGFDLDLGIMLFNPVIISFSLLLGLV

Homology

[Close]

BLAST of Cmc05g0128341 vs. NCBI nr
Match: KAA0050737.1 (Mycolic acid cyclopropane synthase [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 1.6e-23
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MKVAVIGAGINGLISAYVVAKAGVEVVLFEKEEYLGSHHFRTINFDGFDLDLGIMLFNPV 60
          MKVAVIGAGINGLISAYVVAKAGVEVVLFEKEEYLGSHHFRTINFDGFDLDLGIMLFNPV
Sbjct: 1  MKVAVIGAGINGLISAYVVAKAGVEVVLFEKEEYLGSHHFRTINFDGFDLDLGIMLFNPV 60

[Close]

BLAST of Cmc05g0128341 vs. NCBI nr
Match: KAA0050723.1 (Mycolic acid cyclopropane synthase [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 1.6e-23
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MKVAVIGAGINGLISAYVVAKAGVEVVLFEKEEYLGSHHFRTINFDGFDLDLGIMLFNPV 60
          MKVAVIGAGINGLISAYVVAKAGVEVVLFEKEEYLGSHHFRTINFDGFDLDLGIMLFNPV
Sbjct: 1  MKVAVIGAGINGLISAYVVAKAGVEVVLFEKEEYLGSHHFRTINFDGFDLDLGIMLFNPV 60

[Close]

BLAST of Cmc05g0128341 vs. NCBI nr
Match: TYJ95687.1 (Cyclopropane-fatty-acyl-phospholipid synthase isoform 5 [Cucumis melo var. makuwa])

HSP 1 Score: 119.0 bits (297), Expect = 1.6e-23
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MKVAVIGAGINGLISAYVVAKAGVEVVLFEKEEYLGSHHFRTINFDGFDLDLGIMLFNPV 60
          MKVAVIGAGINGLISAYVVAKAGVEVVLFEKEEYLGSHHFRTINFDGFDLDLGIMLFNPV
Sbjct: 1  MKVAVIGAGINGLISAYVVAKAGVEVVLFEKEEYLGSHHFRTINFDGFDLDLGIMLFNPV 60

[Close]

BLAST of Cmc05g0128341 vs. NCBI nr
Match: XP_031736387.1 (uncharacterized protein LOC101213610 isoform X2 [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 4.6e-18
Identity = 49/60 (81.67%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 1  MKVAVIGAGINGLISAYVVAKAGVEVVLFEKEEYLGSHHFRTINFDGFDLDLGIMLFNPV 60
          MKVAVIGAGI GL+ +YV+AKAGVEVVLFE+EEYLGSH +RTI FDGFDLDL IM+FNPV
Sbjct: 1  MKVAVIGAGIKGLVCSYVLAKAGVEVVLFEREEYLGSHRYRTITFDGFDLDLAIMVFNPV 60

[Close]

BLAST of Cmc05g0128341 vs. NCBI nr
Match: KAE8651803.1 (hypothetical protein Csa_006160 [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 4.6e-18
Identity = 49/60 (81.67%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 1  MKVAVIGAGINGLISAYVVAKAGVEVVLFEKEEYLGSHHFRTINFDGFDLDLGIMLFNPV 60
          MKVAVIGAGI GL+ +YV+AKAGVEVVLFE+EEYLGSH +RTI FDGFDLDL IM+FNPV
Sbjct: 1  MKVAVIGAGIKGLVCSYVLAKAGVEVVLFEREEYLGSHRYRTITFDGFDLDLAIMVFNPV 60

[Close]

BLAST of Cmc05g0128341 vs. ExPASy Swiss-Prot
Match: Q2FDU6 (4,4'-diapophytoene desaturase (4,4'-diaponeurosporene-forming) OS=Staphylococcus aureus (strain USA300) OX=367830 GN=crtN PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.0e-04
Identity = 24/53 (45.28%), Postives = 32/53 (60.38%), Query Frame = 0


Query: 1  MKVAVIGAGINGLISAYVVAKAGVEVVLFEKEEYLGSHHFRTINFDGFDLDLG 54
          MK+AVIGAG+ GL +A  +A  G EV +FEK   +G      +  DGF  D+G
Sbjct: 1  MKIAVIGAGVTGLAAAARIASQGHEVTIFEKNNNVGG-RMNQLKKDGFTFDMG 52

[Close]

BLAST of Cmc05g0128341 vs. ExPASy Swiss-Prot
Match: Q2FV60 (4,4'-diapophytoene desaturase (4,4'-diaponeurosporene-forming) OS=Staphylococcus aureus (strain NCTC 8325 / PS 47) OX=93061 GN=crtN PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.0e-04
Identity = 24/53 (45.28%), Postives = 32/53 (60.38%), Query Frame = 0


Query: 1  MKVAVIGAGINGLISAYVVAKAGVEVVLFEKEEYLGSHHFRTINFDGFDLDLG 54
          MK+AVIGAG+ GL +A  +A  G EV +FEK   +G      +  DGF  D+G
Sbjct: 1  MKIAVIGAGVTGLAAAARIASQGHEVTIFEKNNNVGG-RMNQLKKDGFTFDMG 52

[Close]

BLAST of Cmc05g0128341 vs. ExPASy Swiss-Prot
Match: O07855 (4,4'-diapophytoene desaturase (4,4'-diaponeurosporene-forming) OS=Staphylococcus aureus (strain Newman) OX=426430 GN=crtN PE=1 SV=2)

HSP 1 Score: 45.4 bits (106), Expect = 3.0e-04
Identity = 24/53 (45.28%), Postives = 32/53 (60.38%), Query Frame = 0


Query: 1  MKVAVIGAGINGLISAYVVAKAGVEVVLFEKEEYLGSHHFRTINFDGFDLDLG 54
          MK+AVIGAG+ GL +A  +A  G EV +FEK   +G      +  DGF  D+G
Sbjct: 1  MKIAVIGAGVTGLAAAARIASQGHEVTIFEKNNNVGG-RMNQLKKDGFTFDMG 52

[Close]

BLAST of Cmc05g0128341 vs. ExPASy Swiss-Prot
Match: Q99R76 (4,4'-diapophytoene desaturase (4,4'-diaponeurosporene-forming) OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) OX=158878 GN=crtN PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.0e-04
Identity = 24/53 (45.28%), Postives = 32/53 (60.38%), Query Frame = 0


Query: 1  MKVAVIGAGINGLISAYVVAKAGVEVVLFEKEEYLGSHHFRTINFDGFDLDLG 54
          MK+AVIGAG+ GL +A  +A  G EV +FEK   +G      +  DGF  D+G
Sbjct: 1  MKIAVIGAGVTGLAAAARIASQGHEVTIFEKNNNVGG-RMNQLKKDGFTFDMG 52

[Close]

BLAST of Cmc05g0128341 vs. ExPASy Swiss-Prot
Match: Q7A3E2 (4,4'-diapophytoene desaturase (4,4'-diaponeurosporene-forming) OS=Staphylococcus aureus (strain N315) OX=158879 GN=crtN PE=1 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 3.0e-04
Identity = 24/53 (45.28%), Postives = 32/53 (60.38%), Query Frame = 0


Query: 1  MKVAVIGAGINGLISAYVVAKAGVEVVLFEKEEYLGSHHFRTINFDGFDLDLG 54
          MK+AVIGAG+ GL +A  +A  G EV +FEK   +G      +  DGF  D+G
Sbjct: 1  MKIAVIGAGVTGLAAAARIASQGHEVTIFEKNNNVGG-RMNQLKKDGFTFDMG 52

[Close]

BLAST of Cmc05g0128341 vs. ExPASy TrEMBL
Match: A0A5A7U4B4 (Mycolic acid cyclopropane synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00260 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 8.0e-24
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MKVAVIGAGINGLISAYVVAKAGVEVVLFEKEEYLGSHHFRTINFDGFDLDLGIMLFNPV 60
          MKVAVIGAGINGLISAYVVAKAGVEVVLFEKEEYLGSHHFRTINFDGFDLDLGIMLFNPV
Sbjct: 1  MKVAVIGAGINGLISAYVVAKAGVEVVLFEKEEYLGSHHFRTINFDGFDLDLGIMLFNPV 60

[Close]

BLAST of Cmc05g0128341 vs. ExPASy TrEMBL
Match: A0A5D3B982 (Cyclopropane-fatty-acyl-phospholipid synthase isoform 5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold726G00140 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 8.0e-24
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MKVAVIGAGINGLISAYVVAKAGVEVVLFEKEEYLGSHHFRTINFDGFDLDLGIMLFNPV 60
          MKVAVIGAGINGLISAYVVAKAGVEVVLFEKEEYLGSHHFRTINFDGFDLDLGIMLFNPV
Sbjct: 1  MKVAVIGAGINGLISAYVVAKAGVEVVLFEKEEYLGSHHFRTINFDGFDLDLGIMLFNPV 60

[Close]

BLAST of Cmc05g0128341 vs. ExPASy TrEMBL
Match: A0A5A7U8M1 (Mycolic acid cyclopropane synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold560G00430 PE=4 SV=1)

HSP 1 Score: 119.0 bits (297), Expect = 8.0e-24
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0


Query: 1  MKVAVIGAGINGLISAYVVAKAGVEVVLFEKEEYLGSHHFRTINFDGFDLDLGIMLFNPV 60
          MKVAVIGAGINGLISAYVVAKAGVEVVLFEKEEYLGSHHFRTINFDGFDLDLGIMLFNPV
Sbjct: 1  MKVAVIGAGINGLISAYVVAKAGVEVVLFEKEEYLGSHHFRTINFDGFDLDLGIMLFNPV 60

[Close]

BLAST of Cmc05g0128341 vs. ExPASy TrEMBL
Match: A0A0A0LKK7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G172490 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.2e-18
Identity = 49/60 (81.67%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 1  MKVAVIGAGINGLISAYVVAKAGVEVVLFEKEEYLGSHHFRTINFDGFDLDLGIMLFNPV 60
          MKVAVIGAGI GL+ +YV+AKAGVEVVLFE+EEYLGSH +RTI FDGFDLDL IM+FNPV
Sbjct: 1  MKVAVIGAGIKGLVCSYVLAKAGVEVVLFEREEYLGSHRYRTITFDGFDLDLAIMVFNPV 60

[Close]

BLAST of Cmc05g0128341 vs. ExPASy TrEMBL
Match: A0A0A0LNM4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G172460 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 2.2e-18
Identity = 49/60 (81.67%), Postives = 55/60 (91.67%), Query Frame = 0


Query: 1  MKVAVIGAGINGLISAYVVAKAGVEVVLFEKEEYLGSHHFRTINFDGFDLDLGIMLFNPV 60
          MKVAVIGAGI GL+ +YV+AKAGVEVVLFE+EEYLGSH +RTI FDGFDLDL IM+FNPV
Sbjct: 1  MKVAVIGAGIKGLVCSYVLAKAGVEVVLFEREEYLGSHRYRTITFDGFDLDLAIMVFNPV 60

[Close]

BLAST of Cmc05g0128341 vs. TAIR 10
Match: AT3G23530.1 (Cyclopropane-fatty-acyl-phospholipid synthase )

HSP 1 Score: 73.6 bits (179), Expect = 7.4e-14
Identity = 42/61 (68.85%), Postives = 49/61 (80.33%), Query Frame = 0


Query: 1  MKVAVIGAGINGLISAYVVAKAGV-EVVLFEKEEYLGSHHFRTINFDGFDLDLGIMLFNP 60
          MKVAVIG+GI+GL SAYV+A  GV EVVL+EKEE LG  H +T+ FDG DLDLG M+FN 
Sbjct: 1  MKVAVIGSGISGLGSAYVLANQGVKEVVLYEKEESLGG-HAKTVRFDGVDLDLGFMVFNR 60

[Close]

BLAST of Cmc05g0128341 vs. TAIR 10
Match: AT3G23510.1 (Cyclopropane-fatty-acyl-phospholipid synthase )

HSP 1 Score: 71.6 bits (174), Expect = 2.8e-13
Identity = 46/75 (61.33%), Postives = 55/75 (73.33%), Query Frame = 0


Query: 1  MKVAVIGAGINGLISAYVVAKAGV-EVVLFEKEEYLGSHHFRTINFDGFDLDLGIMLFN- 60
          MKVAVIG+GI+GL SAYV+A  GV EVVL+EKEE LG  H +T+ FDG DLDLG M+FN 
Sbjct: 1  MKVAVIGSGISGLGSAYVLANQGVKEVVLYEKEESLGG-HAKTVRFDGVDLDLGFMVFNR 60

Query: 61 ---PVIISFSLLLGL 71
             P +I F   LG+
Sbjct: 61 VTYPNMIEFFENLGV 74

The following BLAST results are available for this feature:

BLAST of Cmc05g0128341 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0050737.1	1.6e-23	100.00	Mycolic acid cyclopropane synthase [Cucumis melo var. makuwa]	[more]
KAA0050723.1	1.6e-23	100.00	Mycolic acid cyclopropane synthase [Cucumis melo var. makuwa]	[more]
TYJ95687.1	1.6e-23	100.00	Cyclopropane-fatty-acyl-phospholipid synthase isoform 5 [Cucumis melo var. makuw...	[more]
XP_031736387.1	4.6e-18	81.67	uncharacterized protein LOC101213610 isoform X2 [Cucumis sativus]	[more]
KAE8651803.1	4.6e-18	81.67	hypothetical protein Csa_006160 [Cucumis sativus]	[more]

BLAST of Cmc05g0128341 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2FDU6	3.0e-04	45.28	4,4'-diapophytoene desaturase (4,4'-diaponeurosporene-forming) OS=Staphylococcus...	[more]
Q2FV60	3.0e-04	45.28	4,4'-diapophytoene desaturase (4,4'-diaponeurosporene-forming) OS=Staphylococcus...	[more]
O07855	3.0e-04	45.28	4,4'-diapophytoene desaturase (4,4'-diaponeurosporene-forming) OS=Staphylococcus...	[more]
Q99R76	3.0e-04	45.28	4,4'-diapophytoene desaturase (4,4'-diaponeurosporene-forming) OS=Staphylococcus...	[more]
Q7A3E2	3.0e-04	45.28	4,4'-diapophytoene desaturase (4,4'-diaponeurosporene-forming) OS=Staphylococcus...	[more]

BLAST of Cmc05g0128341 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U4B4	8.0e-24	100.00	Mycolic acid cyclopropane synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A5D3B982	8.0e-24	100.00	Cyclopropane-fatty-acyl-phospholipid synthase isoform 5 OS=Cucumis melo var. mak...	[more]
A0A5A7U8M1	8.0e-24	100.00	Mycolic acid cyclopropane synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C...	[more]
A0A0A0LKK7	2.2e-18	81.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G172490 PE=4 SV=1	[more]
A0A0A0LNM4	2.2e-18	81.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G172460 PE=4 SV=1	[more]

BLAST of Cmc05g0128341 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23530.1	7.4e-14	68.85	Cyclopropane-fatty-acyl-phospholipid synthase	[more]
AT3G23510.1	2.8e-13	61.33	Cyclopropane-fatty-acyl-phospholipid synthase	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036188	FAD/NAD(P)-binding domain superfamily	GENE3D	3.50.50.60		coord: 1..64 e-value: 1.4E-12 score: 49.8
IPR036188	FAD/NAD(P)-binding domain superfamily	SUPERFAMILY	51905	FAD/NAD(P)-binding domain	coord: 1..59
None	No IPR available	PFAM	PF13450	NAD_binding_8	coord: 5..59 e-value: 8.1E-11 score: 42.0
None	No IPR available	PANTHER	PTHR43675:SF20	METHYLTRANSFERASE, PUTATIVE-RELATED	coord: 1..61
IPR026669	Arsenite methyltransferase-like	PANTHER	PTHR43675	ARSENITE METHYLTRANSFERASE	coord: 1..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc05g0128341.1	Cmc05g0128341.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016491	oxidoreductase activity