Cmc05g0122971 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc05g0122971
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr05: 863436 .. 865214 (+)
RNA-Seq Expression	Cmc05g0122971
Synteny	Cmc05g0122971

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCACTTCGAGGAAGATGAAGAGTGGAAAGATTGTCGTGAGCAGGGATGTTCACTTCGAGGAAGATGAAGAGTGGAACTTTGATGATGCAGAGAAGAAAGGTCAGACCTTGGAAAAGATGAAATTCAAGTTTTTTGATTCAAGCATTGAAGAGGAAGATGACAGGCAGAATGAAATAGTAGATGATGCTTCCGTGAGAGGAACAAGGTTGCTTTCTGATATTTATGAAAGGTGCAATGTTGCTGTGTGTGAACCTGCAAACTATGCAGAAGCAAAGAAAGATCAAAGGTGGATAGCTGCAATGGAGGAGGAGTTGTCAATGATAGAGAAGAACAAAACTTGGATCCTAGTTGACAGACCTCAAGATAGGAAGGTAATTGGAGTTAAATGGGTGTTTAGAACCAAGCTTAATGCTGATGGCTCGATTAACAAGCACAAAGCCAGGCTTGTGGTTAAAGGGTATGCTCAAATCTTTGGTGTTGATTACTCTGATACTTTTGCTCCTGTTGCTAGAATGGACACAATCAGGTTACTATTTGCAATAGCTGCACAAAAGGGGTGGAAATTGTATCAGTTGGATGTCAAATCAGCTTTTTTGAATGGTGTCTTACAAGAAGAAATTTATGTTGAGCAGCCCGAAGGATGTGAGAAGCAAGGTGAAAGAAATAAAGTCTATCTTCTCAAGAAGGCTCTTTATGGTTTAAAACAAGCTCCAAGAGCTTGGTATAGCAAAATTGATGAACATTTACTGAGCTTGGGATTTTTGAAAAGTCTATCAGAATCAACCTTATATGTTAAGCACAATGGTACTAGCATTCTTATTGTTTCACTGTATGTTGATGACCTACTGGTTACAGGAAACAATGCAGATCATATTCAAAATTTCAAATGGGAGATGATGAAGATGTTTGAAATGACAGATCTCGGGCTCATGTCCTACTTCCTTGGCATAGAGATCAAGCAAGGGCAAGGTGAAGTTTTCATTTGCCAGAAAAAATATGCAAAGGAAATACTAAAGAAGTTTAAGATGGATGAGTGTAAGGCTGTAAGCACTCCAATGAATCAAAAGGAGAAGTTGTGCAAAGAAGATGATGCTGACAAAGTTGATGAAGGATATTTTAGGAGTTTAATTGGTTGCTTGATGTATCTCACAGCAACAAGACCTGATATTTTGAATGCTGTGAGTATTTTGTCTCGTTTCATGCATTGTGCAAGTGAATTACATCTTAAGGCAGCAAAAAGAGTGATACGATATGTCAAAGGCACAAGTGATTTTGGTGTTAAGTTCACTAGGGGCAAGGAGTTCAAACTGATTGGTTTTTCTGATAGTGATTGGGGAAGTTCCATTGATGATATGAGAAGCACTTTAGGTTACTGTTTTACTCTTAGCTCTGGTGTTTTCTCTTGGAGCTCGAAAAAGCAAGAGATTGTAGCCCAATCCACTGCTGAAGCAGAATTTATTGCTGCAACAGCTACTGCCAATCAAGCTTTATGGCTGAGGAAAATTTTACTTGACCTTGATCTGAAGCAGAAGAAAAGCACGGAGATTCTTGTTGATAACAAAGCGGCTATTGCTATTTCTCATAATCCTGTGTTTTATAAGAAGACTAAACATTTTAACATCAAGTTATTTTTTTTAAGGGAAGTGCAGAAAAGTGGAGAGGTGATTCTTGTCTACTGTAAAACAGAAGATCAAGTTGCAGACATATTAACTAAACCGTTGCCTACTTGCAAGTTCGAGTTTCTAAGGTCAAAACTTGGTGTTTGCAACTCCTAA

mRNA sequence

ATGTTCACTTCGAGGAAGATGAAGAGTGGAAAGATTGTCGTGAGCAGGGATGTTCACTTCGAGGAAGATGAAGAGTGGAACTTTGATGATGCAGAGAAGAAAGGTCAGACCTTGGAAAAGATGAAATTCAAGTTTTTTGATTCAAGCATTGAAGAGGAAGATGACAGGCAGAATGAAATAGTAGATGATGCTTCCGTGAGAGGAACAAGGTTGCTTTCTGATATTTATGAAAGGTGCAATGTTGCTGTGTGTGAACCTGCAAACTATGCAGAAGCAAAGAAAGATCAAAGGTGGATAGCTGCAATGGAGGAGGAGTTGTCAATGATAGAGAAGAACAAAACTTGGATCCTAGTTGACAGACCTCAAGATAGGAAGGTAATTGGAGTTAAATGGGTGTTTAGAACCAAGCTTAATGCTGATGGCTCGATTAACAAGCACAAAGCCAGGCTTGTGGTTAAAGGGTATGCTCAAATCTTTGGTGTTGATTACTCTGATACTTTTGCTCCTGTTGCTAGAATGGACACAATCAGGTTACTATTTGCAATAGCTGCACAAAAGGGGTGGAAATTGTATCAGTTGGATGTCAAATCAGCTTTTTTGAATGGTGTCTTACAAGAAGAAATTTATGTTGAGCAGCCCGAAGGATGTGAGAAGCAAGGTGAAAGAAATAAAGTCTATCTTCTCAAGAAGGCTCTTTATGGTTTAAAACAAGCTCCAAGAGCTTGGTATAGCAAAATTGATGAACATTTACTGAGCTTGGGATTTTTGAAAAGTCTATCAGAATCAACCTTATATGTTAAGCACAATGGTACTAGCATTCTTATTGTTTCACTGTATGTTGATGACCTACTGGTTACAGGAAACAATGCAGATCATATTCAAAATTTCAAATGGGAGATGATGAAGATGTTTGAAATGACAGATCTCGGGCTCATGTCCTACTTCCTTGGCATAGAGATCAAGCAAGGGCAAGGTGAAGTTTTCATTTGCCAGAAAAAATATGCAAAGGAAATACTAAAGAAGTTTAAGATGGATGAGTGTAAGGCTGTAAGCACTCCAATGAATCAAAAGGAGAAGTTGTGCAAAGAAGATGATGCTGACAAAGTTGATGAAGGATATTTTAGGAGTTTAATTGGTTGCTTGATGTATCTCACAGCAACAAGACCTGATATTTTGAATGCTGTGAGTATTTTGTCTCGTTTCATGCATTGTGCAAGTGAATTACATCTTAAGGCAGCAAAAAGAGTGATACGATATGTCAAAGGCACAAGTGATTTTGGTGTTAAGTTCACTAGGGGCAAGGAGTTCAAACTGATTGGTTTTTCTGATAGTGATTGGGGAAGTTCCATTGATGATATGAGAAGCACTTTAGGTTACTGTTTTACTCTTAGCTCTGGTGTTTTCTCTTGGAGCTCGAAAAAGCAAGAGATTGTAGCCCAATCCACTGCTGAAGCAGAATTTATTGCTGCAACAGCTACTGCCAATCAAGCTTTATGGCTGAGGAAAATTTTACTTGACCTTGATCTGAAGCAGAAGAAAAGCACGGAGATTCTTGTTGATAACAAAGCGGCTATTGCTATTTCTCATAATCCTGTGTTTTATAAGAAGACTAAACATTTTAACATCAAGTTATTTTTTTTAAGGGAAGTGCAGAAAAGTGGAGAGGTGATTCTTGTCTACTGTAAAACAGAAGATCAAGTTGCAGACATATTAACTAAACCGTTGCCTACTTGCAAGTTCGAGTTTCTAAGGTCAAAACTTGGTGTTTGCAACTCCTAA

Coding sequence (CDS)

ATGTTCACTTCGAGGAAGATGAAGAGTGGAAAGATTGTCGTGAGCAGGGATGTTCACTTCGAGGAAGATGAAGAGTGGAACTTTGATGATGCAGAGAAGAAAGGTCAGACCTTGGAAAAGATGAAATTCAAGTTTTTTGATTCAAGCATTGAAGAGGAAGATGACAGGCAGAATGAAATAGTAGATGATGCTTCCGTGAGAGGAACAAGGTTGCTTTCTGATATTTATGAAAGGTGCAATGTTGCTGTGTGTGAACCTGCAAACTATGCAGAAGCAAAGAAAGATCAAAGGTGGATAGCTGCAATGGAGGAGGAGTTGTCAATGATAGAGAAGAACAAAACTTGGATCCTAGTTGACAGACCTCAAGATAGGAAGGTAATTGGAGTTAAATGGGTGTTTAGAACCAAGCTTAATGCTGATGGCTCGATTAACAAGCACAAAGCCAGGCTTGTGGTTAAAGGGTATGCTCAAATCTTTGGTGTTGATTACTCTGATACTTTTGCTCCTGTTGCTAGAATGGACACAATCAGGTTACTATTTGCAATAGCTGCACAAAAGGGGTGGAAATTGTATCAGTTGGATGTCAAATCAGCTTTTTTGAATGGTGTCTTACAAGAAGAAATTTATGTTGAGCAGCCCGAAGGATGTGAGAAGCAAGGTGAAAGAAATAAAGTCTATCTTCTCAAGAAGGCTCTTTATGGTTTAAAACAAGCTCCAAGAGCTTGGTATAGCAAAATTGATGAACATTTACTGAGCTTGGGATTTTTGAAAAGTCTATCAGAATCAACCTTATATGTTAAGCACAATGGTACTAGCATTCTTATTGTTTCACTGTATGTTGATGACCTACTGGTTACAGGAAACAATGCAGATCATATTCAAAATTTCAAATGGGAGATGATGAAGATGTTTGAAATGACAGATCTCGGGCTCATGTCCTACTTCCTTGGCATAGAGATCAAGCAAGGGCAAGGTGAAGTTTTCATTTGCCAGAAAAAATATGCAAAGGAAATACTAAAGAAGTTTAAGATGGATGAGTGTAAGGCTGTAAGCACTCCAATGAATCAAAAGGAGAAGTTGTGCAAAGAAGATGATGCTGACAAAGTTGATGAAGGATATTTTAGGAGTTTAATTGGTTGCTTGATGTATCTCACAGCAACAAGACCTGATATTTTGAATGCTGTGAGTATTTTGTCTCGTTTCATGCATTGTGCAAGTGAATTACATCTTAAGGCAGCAAAAAGAGTGATACGATATGTCAAAGGCACAAGTGATTTTGGTGTTAAGTTCACTAGGGGCAAGGAGTTCAAACTGATTGGTTTTTCTGATAGTGATTGGGGAAGTTCCATTGATGATATGAGAAGCACTTTAGGTTACTGTTTTACTCTTAGCTCTGGTGTTTTCTCTTGGAGCTCGAAAAAGCAAGAGATTGTAGCCCAATCCACTGCTGAAGCAGAATTTATTGCTGCAACAGCTACTGCCAATCAAGCTTTATGGCTGAGGAAAATTTTACTTGACCTTGATCTGAAGCAGAAGAAAAGCACGGAGATTCTTGTTGATAACAAAGCGGCTATTGCTATTTCTCATAATCCTGTGTTTTATAAGAAGACTAAACATTTTAACATCAAGTTATTTTTTTTAAGGGAAGTGCAGAAAAGTGGAGAGGTGATTCTTGTCTACTGTAAAACAGAAGATCAAGTTGCAGACATATTAACTAAACCGTTGCCTACTTGCAAGTTCGAGTTTCTAAGGTCAAAACTTGGTGTTTGCAACTCCTAA

Protein sequence

MFTSRKMKSGKIVVSRDVHFEEDEEWNFDDAEKKGQTLEKMKFKFFDSSIEEEDDRQNEIVDDASVRGTRLLSDIYERCNVAVCEPANYAEAKKDQRWIAAMEEELSMIEKNKTWILVDRPQDRKVIGVKWVFRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGERNKVYLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDDLLVTGNNADHIQNFKWEMMKMFEMTDLGLMSYFLGIEIKQGQGEVFICQKKYAKEILKKFKMDECKAVSTPMNQKEKLCKEDDADKVDEGYFRSLIGCLMYLTATRPDILNAVSILSRFMHCASELHLKAAKRVIRYVKGTSDFGVKFTRGKEFKLIGFSDSDWGSSIDDMRSTLGYCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLKQKKSTEILVDNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTCKFEFLRSKLGVCNS

Homology

[Close]

BLAST of Cmc05g0122971 vs. NCBI nr
Match: KAA0041382.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 1174.5 bits (3037), Expect = 0.0e+00
Identity = 592/592 (100.00%), Postives = 592/592 (100.00%), Query Frame = 0


Query: 1    MFTSRKMKSGKIVVSRDVHFEEDEEWNFDDAEKKGQTLEKMKFKFFDSSIEEEDDRQNEI 60
            MFTSRKMKSGKIVVSRDVHFEEDEEWNFDDAEKKGQTLEKMKFKFFDSSIEEEDDRQNEI
Sbjct: 601  MFTSRKMKSGKIVVSRDVHFEEDEEWNFDDAEKKGQTLEKMKFKFFDSSIEEEDDRQNEI 660

Query: 61   VDDASVRGTRLLSDIYERCNVAVCEPANYAEAKKDQRWIAAMEEELSMIEKNKTWILVDR 120
            VDDASVRGTRLLSDIYERCNVAVCEPANYAEAKKDQRWIAAMEEELSMIEKNKTWILVDR
Sbjct: 661  VDDASVRGTRLLSDIYERCNVAVCEPANYAEAKKDQRWIAAMEEELSMIEKNKTWILVDR 720

Query: 121  PQDRKVIGVKWVFRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLF 180
            PQDRKVIGVKWVFRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLF
Sbjct: 721  PQDRKVIGVKWVFRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLF 780

Query: 181  AIAAQKGWKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGERNKVYLLKKALYGLKQAPR 240
            AIAAQKGWKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGERNKVYLLKKALYGLKQAPR
Sbjct: 781  AIAAQKGWKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGERNKVYLLKKALYGLKQAPR 840

Query: 241  AWYSKIDEHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDDLLVTGNNADHIQNFKWEM 300
            AWYSKIDEHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDDLLVTGNNADHIQNFKWEM
Sbjct: 841  AWYSKIDEHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDDLLVTGNNADHIQNFKWEM 900

Query: 301  MKMFEMTDLGLMSYFLGIEIKQGQGEVFICQKKYAKEILKKFKMDECKAVSTPMNQKEKL 360
            MKMFEMTDLGLMSYFLGIEIKQGQGEVFICQKKYAKEILKKFKMDECKAVSTPMNQKEKL
Sbjct: 901  MKMFEMTDLGLMSYFLGIEIKQGQGEVFICQKKYAKEILKKFKMDECKAVSTPMNQKEKL 960

Query: 361  CKEDDADKVDEGYFRSLIGCLMYLTATRPDILNAVSILSRFMHCASELHLKAAKRVIRYV 420
            CKEDDADKVDEGYFRSLIGCLMYLTATRPDILNAVSILSRFMHCASELHLKAAKRVIRYV
Sbjct: 961  CKEDDADKVDEGYFRSLIGCLMYLTATRPDILNAVSILSRFMHCASELHLKAAKRVIRYV 1020

Query: 421  KGTSDFGVKFTRGKEFKLIGFSDSDWGSSIDDMRSTLGYCFTLSSGVFSWSSKKQEIVAQ 480
            KGTSDFGVKFTRGKEFKLIGFSDSDWGSSIDDMRSTLGYCFTLSSGVFSWSSKKQEIVAQ
Sbjct: 1021 KGTSDFGVKFTRGKEFKLIGFSDSDWGSSIDDMRSTLGYCFTLSSGVFSWSSKKQEIVAQ 1080

Query: 481  STAEAEFIAATATANQALWLRKILLDLDLKQKKSTEILVDNKAAIAISHNPVFYKKTKHF 540
            STAEAEFIAATATANQALWLRKILLDLDLKQKKSTEILVDNKAAIAISHNPVFYKKTKHF
Sbjct: 1081 STAEAEFIAATATANQALWLRKILLDLDLKQKKSTEILVDNKAAIAISHNPVFYKKTKHF 1140

Query: 541  NIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTCKFEFLRSKLGVCNS 593
            NIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTCKFEFLRSKLGVCNS
Sbjct: 1141 NIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTCKFEFLRSKLGVCNS 1192

[Close]

BLAST of Cmc05g0122971 vs. NCBI nr
Match: TYJ95793.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK04080.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK07482.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK23562.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK24808.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 1151.3 bits (2977), Expect = 0.0e+00
Identity = 579/585 (98.97%), Postives = 583/585 (99.66%), Query Frame = 0


Query: 8    KSGKIVVSRDVHFEEDEEWNFDDAEKKGQTLEKMKFKFFDSSIEEEDDRQNEIVDDASVR 67
            ++GKIVVSRDVHFEEDEEWNFDDAEKKGQTLEKMKFKFFDSSIEEEDDRQNEIVDDASVR
Sbjct: 730  QTGKIVVSRDVHFEEDEEWNFDDAEKKGQTLEKMKFKFFDSSIEEEDDRQNEIVDDASVR 789

Query: 68   GTRLLSDIYERCNVAVCEPANYAEAKKDQRWIAAMEEELSMIEKNKTWILVDRPQDRKVI 127
            GTRLLSDIYERCNVAVCEPANYAEAKKDQRWIAAMEEELSMIEKNKTWILVDRPQDRKVI
Sbjct: 790  GTRLLSDIYERCNVAVCEPANYAEAKKDQRWIAAMEEELSMIEKNKTWILVDRPQDRKVI 849

Query: 128  GVKWVFRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKG 187
            GVKWVFRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKG
Sbjct: 850  GVKWVFRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKG 909

Query: 188  WKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGERNKVYLLKKALYGLKQAPRAWYSKID 247
            WKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGERNKVYLLKKALYGLKQAPRAWYSKID
Sbjct: 910  WKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGERNKVYLLKKALYGLKQAPRAWYSKID 969

Query: 248  EHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDDLLVTGNNADHIQNFKWEMMKMFEMT 307
            EHLLSLGFLKSLSESTLYVKHNGT+ILIVSLYVDDLLVTGNNADHIQNFKWEMMKMFEMT
Sbjct: 970  EHLLSLGFLKSLSESTLYVKHNGTNILIVSLYVDDLLVTGNNADHIQNFKWEMMKMFEMT 1029

Query: 308  DLGLMSYFLGIEIKQGQGEVFICQKKYAKEILKKFKMDECKAVSTPMNQKEKLCKEDDAD 367
            DLGLMSYFLGIEIKQGQGEVFICQKKYAKEILKKFKMDECKAVSTPMNQKEKLCKED AD
Sbjct: 1030 DLGLMSYFLGIEIKQGQGEVFICQKKYAKEILKKFKMDECKAVSTPMNQKEKLCKEDGAD 1089

Query: 368  KVDEGYFRSLIGCLMYLTATRPDILNAVSILSRFMHCASELHLKAAKRVIRYVKGTSDFG 427
            KVDEGYFRSLIGCLMYLTATRPDILNAVSILSRFMHCASELHLKAAKRVIRYVKGTSDFG
Sbjct: 1090 KVDEGYFRSLIGCLMYLTATRPDILNAVSILSRFMHCASELHLKAAKRVIRYVKGTSDFG 1149

Query: 428  VKFTRGKEFKLIGFSDSDWGSSIDDMRSTLGYCFTLSSGVFSWSSKKQEIVAQSTAEAEF 487
            VKFTRGKEFKLIGFSDSDWG SIDDMRSTLGYCFTLSSGVFSWSSKKQEIVAQSTAEAEF
Sbjct: 1150 VKFTRGKEFKLIGFSDSDWGGSIDDMRSTLGYCFTLSSGVFSWSSKKQEIVAQSTAEAEF 1209

Query: 488  IAATATANQALWLRKILLDLDLKQKKSTEILVDNKAAIAISHNPVFYKKTKHFNIKLFFL 547
            IAATATANQALWLRKILLDLDL+QKKSTEILVDNKAAIAISHNPVFYKKTKHFNIKLFFL
Sbjct: 1210 IAATATANQALWLRKILLDLDLEQKKSTEILVDNKAAIAISHNPVFYKKTKHFNIKLFFL 1269

Query: 548  REVQKSGEVILVYCKTEDQVADILTKPLPTCKFEFLRSKLGVCNS 593
            REVQKSGEVILVYCKTEDQVADILTKPLPTCKFEFLRSKLGVCNS
Sbjct: 1270 REVQKSGEVILVYCKTEDQVADILTKPLPTCKFEFLRSKLGVCNS 1314

[Close]

BLAST of Cmc05g0122971 vs. NCBI nr
Match: TYK21117.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 1151.3 bits (2977), Expect = 0.0e+00
Identity = 579/585 (98.97%), Postives = 583/585 (99.66%), Query Frame = 0


Query: 8    KSGKIVVSRDVHFEEDEEWNFDDAEKKGQTLEKMKFKFFDSSIEEEDDRQNEIVDDASVR 67
            ++GKIVVSRDVHFEEDEEWNFDDAEKKGQTLEKMKFKFFDSSIEEEDDRQNEIVDDASVR
Sbjct: 846  QTGKIVVSRDVHFEEDEEWNFDDAEKKGQTLEKMKFKFFDSSIEEEDDRQNEIVDDASVR 905

Query: 68   GTRLLSDIYERCNVAVCEPANYAEAKKDQRWIAAMEEELSMIEKNKTWILVDRPQDRKVI 127
            GTRLLSDIYERCNVAVCEPANYAEAKKDQRWIAAMEEELSMIEKNKTWILVDRPQDRKVI
Sbjct: 906  GTRLLSDIYERCNVAVCEPANYAEAKKDQRWIAAMEEELSMIEKNKTWILVDRPQDRKVI 965

Query: 128  GVKWVFRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKG 187
            GVKWVFRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKG
Sbjct: 966  GVKWVFRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKG 1025

Query: 188  WKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGERNKVYLLKKALYGLKQAPRAWYSKID 247
            WKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGERNKVYLLKKALYGLKQAPRAWYSKID
Sbjct: 1026 WKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGERNKVYLLKKALYGLKQAPRAWYSKID 1085

Query: 248  EHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDDLLVTGNNADHIQNFKWEMMKMFEMT 307
            EHLLSLGFLKSLSESTLYVKHNGT+ILIVSLYVDDLLVTGNNADHIQNFKWEMMKMFEMT
Sbjct: 1086 EHLLSLGFLKSLSESTLYVKHNGTNILIVSLYVDDLLVTGNNADHIQNFKWEMMKMFEMT 1145

Query: 308  DLGLMSYFLGIEIKQGQGEVFICQKKYAKEILKKFKMDECKAVSTPMNQKEKLCKEDDAD 367
            DLGLMSYFLGIEIKQGQGEVFICQKKYAKEILKKFKMDECKAVSTPMNQKEKLCKED AD
Sbjct: 1146 DLGLMSYFLGIEIKQGQGEVFICQKKYAKEILKKFKMDECKAVSTPMNQKEKLCKEDGAD 1205

Query: 368  KVDEGYFRSLIGCLMYLTATRPDILNAVSILSRFMHCASELHLKAAKRVIRYVKGTSDFG 427
            KVDEGYFRSLIGCLMYLTATRPDILNAVSILSRFMHCASELHLKAAKRVIRYVKGTSDFG
Sbjct: 1206 KVDEGYFRSLIGCLMYLTATRPDILNAVSILSRFMHCASELHLKAAKRVIRYVKGTSDFG 1265

Query: 428  VKFTRGKEFKLIGFSDSDWGSSIDDMRSTLGYCFTLSSGVFSWSSKKQEIVAQSTAEAEF 487
            VKFTRGKEFKLIGFSDSDWG SIDDMRSTLGYCFTLSSGVFSWSSKKQEIVAQSTAEAEF
Sbjct: 1266 VKFTRGKEFKLIGFSDSDWGGSIDDMRSTLGYCFTLSSGVFSWSSKKQEIVAQSTAEAEF 1325

Query: 488  IAATATANQALWLRKILLDLDLKQKKSTEILVDNKAAIAISHNPVFYKKTKHFNIKLFFL 547
            IAATATANQALWLRKILLDLDL+QKKSTEILVDNKAAIAISHNPVFYKKTKHFNIKLFFL
Sbjct: 1326 IAATATANQALWLRKILLDLDLEQKKSTEILVDNKAAIAISHNPVFYKKTKHFNIKLFFL 1385

Query: 548  REVQKSGEVILVYCKTEDQVADILTKPLPTCKFEFLRSKLGVCNS 593
            REVQKSGEVILVYCKTEDQVADILTKPLPTCKFEFLRSKLGVCNS
Sbjct: 1386 REVQKSGEVILVYCKTEDQVADILTKPLPTCKFEFLRSKLGVCNS 1430

[Close]

BLAST of Cmc05g0122971 vs. NCBI nr
Match: KAA0036309.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >KAA0039006.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >KAA0039248.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >KAA0063721.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYJ96423.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 1151.3 bits (2977), Expect = 0.0e+00
Identity = 579/585 (98.97%), Postives = 583/585 (99.66%), Query Frame = 0


Query: 8    KSGKIVVSRDVHFEEDEEWNFDDAEKKGQTLEKMKFKFFDSSIEEEDDRQNEIVDDASVR 67
            ++GKIVVSRDVHFEEDEEWNFDDAEKKGQTLEKMKFKFFDSSIEEEDDRQNEIVDDASVR
Sbjct: 730  QTGKIVVSRDVHFEEDEEWNFDDAEKKGQTLEKMKFKFFDSSIEEEDDRQNEIVDDASVR 789

Query: 68   GTRLLSDIYERCNVAVCEPANYAEAKKDQRWIAAMEEELSMIEKNKTWILVDRPQDRKVI 127
            GTRLLSDIYERCNVAVCEPANYAEAKKDQRWIAAMEEELSMIEKNKTWILVDRPQDRKVI
Sbjct: 790  GTRLLSDIYERCNVAVCEPANYAEAKKDQRWIAAMEEELSMIEKNKTWILVDRPQDRKVI 849

Query: 128  GVKWVFRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKG 187
            GVKWVFRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKG
Sbjct: 850  GVKWVFRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKG 909

Query: 188  WKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGERNKVYLLKKALYGLKQAPRAWYSKID 247
            WKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGERNKVYLLKKALYGLKQAPRAWYSKID
Sbjct: 910  WKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGERNKVYLLKKALYGLKQAPRAWYSKID 969

Query: 248  EHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDDLLVTGNNADHIQNFKWEMMKMFEMT 307
            EHLLSLGFLKSLSESTLYVKHNGT+ILIVSLYVDDLLVTGNNADHIQNFKWEMMKMFEMT
Sbjct: 970  EHLLSLGFLKSLSESTLYVKHNGTNILIVSLYVDDLLVTGNNADHIQNFKWEMMKMFEMT 1029

Query: 308  DLGLMSYFLGIEIKQGQGEVFICQKKYAKEILKKFKMDECKAVSTPMNQKEKLCKEDDAD 367
            DLGLMSYFLGIEIKQGQGEVFICQKKYAKEILKKFKMDECKAVSTPMNQKEKLCKED AD
Sbjct: 1030 DLGLMSYFLGIEIKQGQGEVFICQKKYAKEILKKFKMDECKAVSTPMNQKEKLCKEDGAD 1089

Query: 368  KVDEGYFRSLIGCLMYLTATRPDILNAVSILSRFMHCASELHLKAAKRVIRYVKGTSDFG 427
            KVDEGYFRSLIGCLMYLTATRPDILNAVSILSRFMHCASELHLKAAKRVIRYVKGTSDFG
Sbjct: 1090 KVDEGYFRSLIGCLMYLTATRPDILNAVSILSRFMHCASELHLKAAKRVIRYVKGTSDFG 1149

Query: 428  VKFTRGKEFKLIGFSDSDWGSSIDDMRSTLGYCFTLSSGVFSWSSKKQEIVAQSTAEAEF 487
            VKFTRGKEFKLIGFSDSDWG SIDDMRSTLGYCFTLSSGVFSWSSKKQEIVAQSTAEAEF
Sbjct: 1150 VKFTRGKEFKLIGFSDSDWGGSIDDMRSTLGYCFTLSSGVFSWSSKKQEIVAQSTAEAEF 1209

Query: 488  IAATATANQALWLRKILLDLDLKQKKSTEILVDNKAAIAISHNPVFYKKTKHFNIKLFFL 547
            IAATATANQALWLRKILLDLDL+QKKSTEILVDNKAAIAISHNPVFYKKTKHFNIKLFFL
Sbjct: 1210 IAATATANQALWLRKILLDLDLEQKKSTEILVDNKAAIAISHNPVFYKKTKHFNIKLFFL 1269

Query: 548  REVQKSGEVILVYCKTEDQVADILTKPLPTCKFEFLRSKLGVCNS 593
            REVQKSGEVILVYCKTEDQVADILTKPLPTCKFEFLRSKLGVCNS
Sbjct: 1270 REVQKSGEVILVYCKTEDQVADILTKPLPTCKFEFLRSKLGVCNS 1314

[Close]

BLAST of Cmc05g0122971 vs. NCBI nr
Match: KAA0025181.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 1148.7 bits (2970), Expect = 0.0e+00
Identity = 578/585 (98.80%), Postives = 582/585 (99.49%), Query Frame = 0


Query: 8    KSGKIVVSRDVHFEEDEEWNFDDAEKKGQTLEKMKFKFFDSSIEEEDDRQNEIVDDASVR 67
            ++GKIVVSRDVHFEEDEEWNFDDAEKKGQTLEKMKFKFFDSSIEEEDDRQNEIVDDASVR
Sbjct: 702  QTGKIVVSRDVHFEEDEEWNFDDAEKKGQTLEKMKFKFFDSSIEEEDDRQNEIVDDASVR 761

Query: 68   GTRLLSDIYERCNVAVCEPANYAEAKKDQRWIAAMEEELSMIEKNKTWILVDRPQDRKVI 127
            GTRLLSDIYERCNVAVCEPANYAEAKKDQRWIAAMEEELSMIEKNKTWILVDRPQDRKVI
Sbjct: 762  GTRLLSDIYERCNVAVCEPANYAEAKKDQRWIAAMEEELSMIEKNKTWILVDRPQDRKVI 821

Query: 128  GVKWVFRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKG 187
            GVKWVFRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKG
Sbjct: 822  GVKWVFRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKG 881

Query: 188  WKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGERNKVYLLKKALYGLKQAPRAWYSKID 247
            WKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGERNKVYLLKKALYGLKQAPRAWYSKID
Sbjct: 882  WKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGERNKVYLLKKALYGLKQAPRAWYSKID 941

Query: 248  EHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDDLLVTGNNADHIQNFKWEMMKMFEMT 307
            EHLLSLGFLKSLSESTLYVKHNGT+ILIVSLYVDDLLVTGNNADHIQNFKWEMMKMFEMT
Sbjct: 942  EHLLSLGFLKSLSESTLYVKHNGTNILIVSLYVDDLLVTGNNADHIQNFKWEMMKMFEMT 1001

Query: 308  DLGLMSYFLGIEIKQGQGEVFICQKKYAKEILKKFKMDECKAVSTPMNQKEKLCKEDDAD 367
            DLGLMSYFLGIEIKQGQGEVFICQKKYAKEILKKFKMDECKAVSTPMNQKEKLCKED AD
Sbjct: 1002 DLGLMSYFLGIEIKQGQGEVFICQKKYAKEILKKFKMDECKAVSTPMNQKEKLCKEDGAD 1061

Query: 368  KVDEGYFRSLIGCLMYLTATRPDILNAVSILSRFMHCASELHLKAAKRVIRYVKGTSDFG 427
            KVDEGYFRSLIGCLMYLTATRPDILNAVSILSRFMHCASELHLKAAKRVIRYVKGTSDFG
Sbjct: 1062 KVDEGYFRSLIGCLMYLTATRPDILNAVSILSRFMHCASELHLKAAKRVIRYVKGTSDFG 1121

Query: 428  VKFTRGKEFKLIGFSDSDWGSSIDDMRSTLGYCFTLSSGVFSWSSKKQEIVAQSTAEAEF 487
            VKFTRGKEFKLIGFSDSDWG SIDDMRSTLGYCFTLSSGVFSWSSKKQEIVAQSTAEAEF
Sbjct: 1122 VKFTRGKEFKLIGFSDSDWGGSIDDMRSTLGYCFTLSSGVFSWSSKKQEIVAQSTAEAEF 1181

Query: 488  IAATATANQALWLRKILLDLDLKQKKSTEILVDNKAAIAISHNPVFYKKTKHFNIKLFFL 547
            IAATATANQALWLRKILLDLDL+QKKSTEILVDNKAAIAISHNPVFYKKTKHFNIKLFFL
Sbjct: 1182 IAATATANQALWLRKILLDLDLEQKKSTEILVDNKAAIAISHNPVFYKKTKHFNIKLFFL 1241

Query: 548  REVQKSGEVILVYCKTEDQVADILTKPLPTCKFEFLRSKLGVCNS 593
            REVQKSG VILVYCKTEDQVADILTKPLPTCKFEFLRSKLGVCNS
Sbjct: 1242 REVQKSGGVILVYCKTEDQVADILTKPLPTCKFEFLRSKLGVCNS 1286

[Close]

BLAST of Cmc05g0122971 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 4.2e-107
Identity = 205/509 (40.28%), Postives = 306/509 (60.12%), Query Frame = 0


Query: 82   AVCEPANYAEAKKDQRWIAAMEEELSMIEKNKTWILVDRPQDR-KVIGVKWVFRTKLNAD 141
            A  EP    +A KD+RW  AM  E++    N TW LV  P     ++G +W+F  K N+D
Sbjct: 952  AESEPRTAIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSD 1011

Query: 142  GSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSAFL 201
            GS+N++KARLV KGY Q  G+DY++TF+PV +  +IR++  +A  + W + QLDV +AFL
Sbjct: 1012 GSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFL 1071

Query: 202  NGVLQEEIYVEQPEGCEKQGERNKVYLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLS 261
             G L +++Y+ QP G   +   N V  L+KALYGLKQAPRAWY ++  +LL++GF+ S+S
Sbjct: 1072 QGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVS 1131

Query: 262  ESTLYVKHNGTSILIVSLYVDDLLVTGNNADHIQNFKWEMMKMFEMTDLGLMSYFLGIEI 321
            +++L+V   G SI+ + +YVDD+L+TGN+   + N    + + F + D   + YFLGIE 
Sbjct: 1132 DTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKDHEELHYFLGIEA 1191

Query: 322  KQGQGEVFICQKKYAKEILKKFKMDECKAVSTPMNQKEKLCKEDDADKVDEGYFRSLIGC 381
            K+    + + Q++Y  ++L +  M   K V+TPM    KL         D   +R ++G 
Sbjct: 1192 KRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPKLSLYSGTKLTDPTEYRGIVGS 1251

Query: 382  LMYLTATRPDILNAVSILSRFMHCASELHLKAAKRVIRYVKGTSDFGVKFTRGKEFKLIG 441
            L YL  TRPDI  AV+ LS+FMH  +E HL+A KR++RY+ GT + G+   +G    L  
Sbjct: 1252 LQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHA 1311

Query: 442  FSDSDWGSSIDDMRSTLGYCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWL 501
            +SD+DW    DD  ST GY   L     SWSSKKQ+ V +S+ EAE+ +   T+++  W+
Sbjct: 1312 YSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWI 1371

Query: 502  RKILLDLDLKQKKSTEILVDNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVY 561
              +L +L ++  +   I  DN  A  +  NPVF+ + KH  I   F+R   +SG + +V+
Sbjct: 1372 CSLLTELGIRLTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVH 1431

Query: 562  CKTEDQVADILTKPLPTCKFEFLRSKLGV 590
              T DQ+AD LTKPL    F+   SK+GV
Sbjct: 1432 VSTHDQLADTLTKPLSRTAFQNFASKIGV 1460

[Close]

BLAST of Cmc05g0122971 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 2.8e-103
Identity = 199/515 (38.64%), Postives = 303/515 (58.83%), Query Frame = 0


Query: 76   YERCNVAVCEPANYAEAKKDQRWIAAMEEELSMIEKNKTWILVDRPQDR-KVIGVKWVFR 135
            Y     A  EP    +A KD RW  AM  E++    N TW LV  P     ++G +W+F 
Sbjct: 929  YATSLAANSEPRTAIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFT 988

Query: 136  TKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLD 195
             K N+DGS+N++KARLV KGY Q  G+DY++TF+PV +  +IR++  +A  + W + QLD
Sbjct: 989  KKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLD 1048

Query: 196  VKSAFLNGVLQEEIYVEQPEGCEKQGERNKVYLLKKALYGLKQAPRAWYSKIDEHLLSLG 255
            V +AFL G L +E+Y+ QP G   +   + V  L+KA+YGLKQAPRAWY ++  +LL++G
Sbjct: 1049 VNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVG 1108

Query: 256  FLKSLSESTLYVKHNGTSILIVSLYVDDLLVTGNNADHIQNFKWEMMKMFEMTDLGLMSY 315
            F+ S+S+++L+V   G SI+ + +YVDD+L+TGN+   +++    + + F + +   + Y
Sbjct: 1109 FVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKEHEDLHY 1168

Query: 316  FLGIEIKQGQGEVFICQKKYAKEILKKFKMDECKAVSTPMNQKEKLCKEDDADKVDEGYF 375
            FLGIE K+    + + Q++Y  ++L +  M   K V+TPM    KL         D   +
Sbjct: 1169 FLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDPTEY 1228

Query: 376  RSLIGCLMYLTATRPDILNAVSILSRFMHCASELHLKAAKRVIRYVKGTSDFGVKFTRGK 435
            R ++G L YL  TRPD+  AV+ LS++MH  ++ H  A KRV+RY+ GT D G+   +G 
Sbjct: 1229 RGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGN 1288

Query: 436  EFKLIGFSDSDWGSSIDDMRSTLGYCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATA 495
               L  +SD+DW    DD  ST GY   L     SWSSKKQ+ V +S+ EAE+ +   T+
Sbjct: 1289 TLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTS 1348

Query: 496  NQALWLRKILLDLDLKQKKSTEILVDNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSG 555
            ++  W+  +L +L ++      I  DN  A  +  NPVF+ + KH  +   F+R   +SG
Sbjct: 1349 SELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSG 1408

Query: 556  EVILVYCKTEDQVADILTKPLPTCKFEFLRSKLGV 590
             + +V+  T DQ+AD LTKPL    F+    K+GV
Sbjct: 1409 ALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGV 1443

[Close]

BLAST of Cmc05g0122971 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 366.3 bits (939), Expect = 6.5e-100
Identity = 209/550 (38.00%), Postives = 323/550 (58.73%), Query Frame = 0


Query: 49   SIEEEDDRQNEIVDDASVRGTRLLSDIYERCNVAVCEPANYAEAKKDQRWIAAMEEELSM 108
            S  EED+  N++V +A      + +D+         +   Y + K    W  A+  EL+ 
Sbjct: 868  SYNEEDNSLNKVVLNAHT----IFNDVPNS-----FDEIQYRDDKSS--WEEAINTELNA 927

Query: 109  IEKNKTWILVDRPQDRKVIGVKWVFRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFA 168
             + N TW +  RP+++ ++  +WVF  K N  G+  ++KARLV +G+ Q + +DY +TFA
Sbjct: 928  HKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFA 987

Query: 169  PVARMDTIRLLFAIAAQKGWKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGERNKVYLL 228
            PVAR+ + R + ++  Q   K++Q+DVK+AFLNG L+EEIY+  P+G     +   V  L
Sbjct: 988  PVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGISCNSD--NVCKL 1047

Query: 229  KKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSESTLYV--KHNGTSILIVSLYVDDLLVT 288
             KA+YGLKQA R W+   ++ L    F+ S  +  +Y+  K N    + V LYVDD+++ 
Sbjct: 1048 NKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIA 1107

Query: 289  GNNADHIQNFKWEMMKMFEMTDLGLMSYFLGIEIKQGQGEVFICQKKYAKEILKKFKMDE 348
              +   + NFK  +M+ F MTDL  + +F+GI I+  + ++++ Q  Y K+IL KF M+ 
Sbjct: 1108 TGDMTRMNNFKRYLMEKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMEN 1167

Query: 349  CKAVSTPMNQK---EKLCKEDDADKVDEGYFRSLIGCLMY-LTATRPDILNAVSILSRFM 408
            C AVSTP+  K   E L  ++D +       RSLIGCLMY +  TRPD+  AV+ILSR+ 
Sbjct: 1168 CNAVSTPLPSKINYELLNSDEDCNTP----CRSLIGCLMYIMLCTRPDLTTAVNILSRYS 1227

Query: 409  HCASELHLKAAKRVIRYVKGTSDFGVKFTRGKEF--KLIGFSDSDWGSSIDDMRSTLGYC 468
               +    +  KRV+RY+KGT D  + F +   F  K+IG+ DSDW  S  D +ST GY 
Sbjct: 1228 SKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYL 1287

Query: 469  FTL-SSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLKQKKSTEILV 528
            F +    +  W++K+Q  VA S+ EAE++A      +ALWL+ +L  +++K +   +I  
Sbjct: 1288 FKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIYE 1347

Query: 529  DNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTCK 588
            DN+  I+I++NP  +K+ KH +IK  F RE  ++  + L Y  TE+Q+ADI TKPLP  +
Sbjct: 1348 DNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTENQLADIFTKPLPAAR 1400

Query: 589  FEFLRSKLGV 590
            F  LR KLG+
Sbjct: 1408 FVELRDKLGL 1400

[Close]

BLAST of Cmc05g0122971 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 6.7e-97
Identity = 195/499 (39.08%), Postives = 315/499 (63.13%), Query Frame = 0


Query: 101  AMEEELSMIEKNKTWILVDRPQDRKVIGVKWVFRTKLNADGSINKHKARLVVKGYAQIFG 160
            AM+EE+  ++KN T+ LV+ P+ ++ +  KWVF+ K + D  + ++KARLVVKG+ Q  G
Sbjct: 829  AMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKG 888

Query: 161  VDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQG 220
            +D+ + F+PV +M +IR + ++AA    ++ QLDVK+AFL+G L+EEIY+EQPEG E  G
Sbjct: 889  IDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAG 948

Query: 221  ERNKVYLLKKALYGLKQAPRAWYSKIDEHLLSLGFLKSLSESTLYVKH-NGTSILIVSLY 280
            +++ V  L K+LYGLKQAPR WY K D  + S  +LK+ S+  +Y K  +  + +I+ LY
Sbjct: 949  KKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLY 1008

Query: 281  VDDLLVTGNNADHIQNFKWEMMKMFEMTDLGLMSYFLGIEI--KQGQGEVFICQKKYAKE 340
            VDD+L+ G +   I   K ++ K F+M DLG     LG++I  ++   ++++ Q+KY + 
Sbjct: 1009 VDDMLIVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIER 1068

Query: 341  ILKKFKMDECKAVSTPMNQKEKLCKEDDADKVDEG------YFRSLIGCLMY-LTATRPD 400
            +L++F M   K VSTP+    KL K+     V+E        + S +G LMY +  TRPD
Sbjct: 1069 VLERFNMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPD 1128

Query: 401  ILNAVSILSRFMHCASELHLKAAKRVIRYVKGTSDFGVKFTRGKEFKLIGFSDSDWGSSI 460
            I +AV ++SRF+    + H +A K ++RY++GT+   + F  G +  L G++D+D    I
Sbjct: 1129 IAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCF-GGSDPILKGYTDADMAGDI 1188

Query: 461  DDMRSTLGYCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALWLRKILLDLDLK 520
            D+ +S+ GY FT S G  SW SK Q+ VA ST EAE+IAAT T  + +WL++ L +L L 
Sbjct: 1189 DNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLH 1248

Query: 521  QKKSTEILVDNKAAIAISHNPVFYKKTKHFNIKLFFLREVQKSGEVILVYCKTEDQVADI 580
            QK+   +  D+++AI +S N +++ +TKH +++  ++RE+     + ++   T +  AD+
Sbjct: 1249 QKEYV-VYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADM 1308

Query: 581  LTKPLPTCKFEFLRSKLGV 590
            LTK +P  KFE  +  +G+
Sbjct: 1309 LTKVVPRNKFELCKELVGM 1325

[Close]

BLAST of Cmc05g0122971 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 163.7 bits (413), Expect = 6.4e-39
Identity = 100/304 (32.89%), Postives = 162/304 (53.29%), Query Frame = 0


Query: 193 LDVKSAFLNGVLQEEIYVEQPEGCEKQGERNKVYLLKKALYGLKQAPRAWYSKIDEHLLS 252
           +DV +AFLN  + E IYV+QP G   +   + V+ L   +YGLKQAP  W   I+  L  
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 253 LGFLKSLSESTLYVKHNGTSILIVSLYVDDLLVTGNNADHIQNFKWEMMKMFEMTDLGLM 312
           +GF +   E  LY +      + +++YVDDLLV   +       K E+ K++ M DLG +
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 313 SYFLGIEIKQ-GQGEVFICQKKYAKEILKKFKMDECKAVSTPMNQKEKLCKEDDADKVDE 372
             FLG+ I Q   G++ +  + Y  +   + +++  K   TP+   + L +       D 
Sbjct: 121 DKFLGLNIHQSSNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDI 180

Query: 373 GYFRSLIGCLMYLTAT-RPDILNAVSILSRFMHCASELHLKAAKRVIRYVKGTSDFGVKF 432
             ++S++G L++   T RPDI   VS+LSRF+     +HL++A+RV+RY+  T    +K+
Sbjct: 181 TPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKY 240

Query: 433 TRGKEFKLIGFSDSDWGSSIDDMRSTLGYCFTLSSGVFSWSSKK-QEIVAQSTAEAEFIA 492
             G +  L  + D+  G+  D   ST GY   L+    +WSSKK + ++   + EAE+I 
Sbjct: 241 RSGSQLALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKKLKGVIPVPSTEAEYIT 300

Query: 493 ATAT 494
           A+ T
Sbjct: 301 ASET 304

[Close]

BLAST of Cmc05g0122971 vs. ExPASy TrEMBL
Match: A0A5A7TD67 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00270 PE=4 SV=1)

HSP 1 Score: 1174.5 bits (3037), Expect = 0.0e+00
Identity = 592/592 (100.00%), Postives = 592/592 (100.00%), Query Frame = 0


Query: 1    MFTSRKMKSGKIVVSRDVHFEEDEEWNFDDAEKKGQTLEKMKFKFFDSSIEEEDDRQNEI 60
            MFTSRKMKSGKIVVSRDVHFEEDEEWNFDDAEKKGQTLEKMKFKFFDSSIEEEDDRQNEI
Sbjct: 601  MFTSRKMKSGKIVVSRDVHFEEDEEWNFDDAEKKGQTLEKMKFKFFDSSIEEEDDRQNEI 660

Query: 61   VDDASVRGTRLLSDIYERCNVAVCEPANYAEAKKDQRWIAAMEEELSMIEKNKTWILVDR 120
            VDDASVRGTRLLSDIYERCNVAVCEPANYAEAKKDQRWIAAMEEELSMIEKNKTWILVDR
Sbjct: 661  VDDASVRGTRLLSDIYERCNVAVCEPANYAEAKKDQRWIAAMEEELSMIEKNKTWILVDR 720

Query: 121  PQDRKVIGVKWVFRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLF 180
            PQDRKVIGVKWVFRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLF
Sbjct: 721  PQDRKVIGVKWVFRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLF 780

Query: 181  AIAAQKGWKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGERNKVYLLKKALYGLKQAPR 240
            AIAAQKGWKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGERNKVYLLKKALYGLKQAPR
Sbjct: 781  AIAAQKGWKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGERNKVYLLKKALYGLKQAPR 840

Query: 241  AWYSKIDEHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDDLLVTGNNADHIQNFKWEM 300
            AWYSKIDEHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDDLLVTGNNADHIQNFKWEM
Sbjct: 841  AWYSKIDEHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDDLLVTGNNADHIQNFKWEM 900

Query: 301  MKMFEMTDLGLMSYFLGIEIKQGQGEVFICQKKYAKEILKKFKMDECKAVSTPMNQKEKL 360
            MKMFEMTDLGLMSYFLGIEIKQGQGEVFICQKKYAKEILKKFKMDECKAVSTPMNQKEKL
Sbjct: 901  MKMFEMTDLGLMSYFLGIEIKQGQGEVFICQKKYAKEILKKFKMDECKAVSTPMNQKEKL 960

Query: 361  CKEDDADKVDEGYFRSLIGCLMYLTATRPDILNAVSILSRFMHCASELHLKAAKRVIRYV 420
            CKEDDADKVDEGYFRSLIGCLMYLTATRPDILNAVSILSRFMHCASELHLKAAKRVIRYV
Sbjct: 961  CKEDDADKVDEGYFRSLIGCLMYLTATRPDILNAVSILSRFMHCASELHLKAAKRVIRYV 1020

Query: 421  KGTSDFGVKFTRGKEFKLIGFSDSDWGSSIDDMRSTLGYCFTLSSGVFSWSSKKQEIVAQ 480
            KGTSDFGVKFTRGKEFKLIGFSDSDWGSSIDDMRSTLGYCFTLSSGVFSWSSKKQEIVAQ
Sbjct: 1021 KGTSDFGVKFTRGKEFKLIGFSDSDWGSSIDDMRSTLGYCFTLSSGVFSWSSKKQEIVAQ 1080

Query: 481  STAEAEFIAATATANQALWLRKILLDLDLKQKKSTEILVDNKAAIAISHNPVFYKKTKHF 540
            STAEAEFIAATATANQALWLRKILLDLDLKQKKSTEILVDNKAAIAISHNPVFYKKTKHF
Sbjct: 1081 STAEAEFIAATATANQALWLRKILLDLDLKQKKSTEILVDNKAAIAISHNPVFYKKTKHF 1140

Query: 541  NIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTCKFEFLRSKLGVCNS 593
            NIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTCKFEFLRSKLGVCNS
Sbjct: 1141 NIKLFFLREVQKSGEVILVYCKTEDQVADILTKPLPTCKFEFLRSKLGVCNS 1192

[Close]

BLAST of Cmc05g0122971 vs. ExPASy TrEMBL
Match: A0A5D3E2V7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G00370 PE=4 SV=1)

HSP 1 Score: 1151.3 bits (2977), Expect = 0.0e+00
Identity = 579/585 (98.97%), Postives = 583/585 (99.66%), Query Frame = 0


Query: 8    KSGKIVVSRDVHFEEDEEWNFDDAEKKGQTLEKMKFKFFDSSIEEEDDRQNEIVDDASVR 67
            ++GKIVVSRDVHFEEDEEWNFDDAEKKGQTLEKMKFKFFDSSIEEEDDRQNEIVDDASVR
Sbjct: 730  QTGKIVVSRDVHFEEDEEWNFDDAEKKGQTLEKMKFKFFDSSIEEEDDRQNEIVDDASVR 789

Query: 68   GTRLLSDIYERCNVAVCEPANYAEAKKDQRWIAAMEEELSMIEKNKTWILVDRPQDRKVI 127
            GTRLLSDIYERCNVAVCEPANYAEAKKDQRWIAAMEEELSMIEKNKTWILVDRPQDRKVI
Sbjct: 790  GTRLLSDIYERCNVAVCEPANYAEAKKDQRWIAAMEEELSMIEKNKTWILVDRPQDRKVI 849

Query: 128  GVKWVFRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKG 187
            GVKWVFRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKG
Sbjct: 850  GVKWVFRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKG 909

Query: 188  WKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGERNKVYLLKKALYGLKQAPRAWYSKID 247
            WKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGERNKVYLLKKALYGLKQAPRAWYSKID
Sbjct: 910  WKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGERNKVYLLKKALYGLKQAPRAWYSKID 969

Query: 248  EHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDDLLVTGNNADHIQNFKWEMMKMFEMT 307
            EHLLSLGFLKSLSESTLYVKHNGT+ILIVSLYVDDLLVTGNNADHIQNFKWEMMKMFEMT
Sbjct: 970  EHLLSLGFLKSLSESTLYVKHNGTNILIVSLYVDDLLVTGNNADHIQNFKWEMMKMFEMT 1029

Query: 308  DLGLMSYFLGIEIKQGQGEVFICQKKYAKEILKKFKMDECKAVSTPMNQKEKLCKEDDAD 367
            DLGLMSYFLGIEIKQGQGEVFICQKKYAKEILKKFKMDECKAVSTPMNQKEKLCKED AD
Sbjct: 1030 DLGLMSYFLGIEIKQGQGEVFICQKKYAKEILKKFKMDECKAVSTPMNQKEKLCKEDGAD 1089

Query: 368  KVDEGYFRSLIGCLMYLTATRPDILNAVSILSRFMHCASELHLKAAKRVIRYVKGTSDFG 427
            KVDEGYFRSLIGCLMYLTATRPDILNAVSILSRFMHCASELHLKAAKRVIRYVKGTSDFG
Sbjct: 1090 KVDEGYFRSLIGCLMYLTATRPDILNAVSILSRFMHCASELHLKAAKRVIRYVKGTSDFG 1149

Query: 428  VKFTRGKEFKLIGFSDSDWGSSIDDMRSTLGYCFTLSSGVFSWSSKKQEIVAQSTAEAEF 487
            VKFTRGKEFKLIGFSDSDWG SIDDMRSTLGYCFTLSSGVFSWSSKKQEIVAQSTAEAEF
Sbjct: 1150 VKFTRGKEFKLIGFSDSDWGGSIDDMRSTLGYCFTLSSGVFSWSSKKQEIVAQSTAEAEF 1209

Query: 488  IAATATANQALWLRKILLDLDLKQKKSTEILVDNKAAIAISHNPVFYKKTKHFNIKLFFL 547
            IAATATANQALWLRKILLDLDL+QKKSTEILVDNKAAIAISHNPVFYKKTKHFNIKLFFL
Sbjct: 1210 IAATATANQALWLRKILLDLDLEQKKSTEILVDNKAAIAISHNPVFYKKTKHFNIKLFFL 1269

Query: 548  REVQKSGEVILVYCKTEDQVADILTKPLPTCKFEFLRSKLGVCNS 593
            REVQKSGEVILVYCKTEDQVADILTKPLPTCKFEFLRSKLGVCNS
Sbjct: 1270 REVQKSGEVILVYCKTEDQVADILTKPLPTCKFEFLRSKLGVCNS 1314

[Close]

BLAST of Cmc05g0122971 vs. ExPASy TrEMBL
Match: A0A5D3DMJ1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G00670 PE=4 SV=1)

HSP 1 Score: 1151.3 bits (2977), Expect = 0.0e+00
Identity = 579/585 (98.97%), Postives = 583/585 (99.66%), Query Frame = 0


Query: 8    KSGKIVVSRDVHFEEDEEWNFDDAEKKGQTLEKMKFKFFDSSIEEEDDRQNEIVDDASVR 67
            ++GKIVVSRDVHFEEDEEWNFDDAEKKGQTLEKMKFKFFDSSIEEEDDRQNEIVDDASVR
Sbjct: 730  QTGKIVVSRDVHFEEDEEWNFDDAEKKGQTLEKMKFKFFDSSIEEEDDRQNEIVDDASVR 789

Query: 68   GTRLLSDIYERCNVAVCEPANYAEAKKDQRWIAAMEEELSMIEKNKTWILVDRPQDRKVI 127
            GTRLLSDIYERCNVAVCEPANYAEAKKDQRWIAAMEEELSMIEKNKTWILVDRPQDRKVI
Sbjct: 790  GTRLLSDIYERCNVAVCEPANYAEAKKDQRWIAAMEEELSMIEKNKTWILVDRPQDRKVI 849

Query: 128  GVKWVFRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKG 187
            GVKWVFRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKG
Sbjct: 850  GVKWVFRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKG 909

Query: 188  WKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGERNKVYLLKKALYGLKQAPRAWYSKID 247
            WKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGERNKVYLLKKALYGLKQAPRAWYSKID
Sbjct: 910  WKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGERNKVYLLKKALYGLKQAPRAWYSKID 969

Query: 248  EHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDDLLVTGNNADHIQNFKWEMMKMFEMT 307
            EHLLSLGFLKSLSESTLYVKHNGT+ILIVSLYVDDLLVTGNNADHIQNFKWEMMKMFEMT
Sbjct: 970  EHLLSLGFLKSLSESTLYVKHNGTNILIVSLYVDDLLVTGNNADHIQNFKWEMMKMFEMT 1029

Query: 308  DLGLMSYFLGIEIKQGQGEVFICQKKYAKEILKKFKMDECKAVSTPMNQKEKLCKEDDAD 367
            DLGLMSYFLGIEIKQGQGEVFICQKKYAKEILKKFKMDECKAVSTPMNQKEKLCKED AD
Sbjct: 1030 DLGLMSYFLGIEIKQGQGEVFICQKKYAKEILKKFKMDECKAVSTPMNQKEKLCKEDGAD 1089

Query: 368  KVDEGYFRSLIGCLMYLTATRPDILNAVSILSRFMHCASELHLKAAKRVIRYVKGTSDFG 427
            KVDEGYFRSLIGCLMYLTATRPDILNAVSILSRFMHCASELHLKAAKRVIRYVKGTSDFG
Sbjct: 1090 KVDEGYFRSLIGCLMYLTATRPDILNAVSILSRFMHCASELHLKAAKRVIRYVKGTSDFG 1149

Query: 428  VKFTRGKEFKLIGFSDSDWGSSIDDMRSTLGYCFTLSSGVFSWSSKKQEIVAQSTAEAEF 487
            VKFTRGKEFKLIGFSDSDWG SIDDMRSTLGYCFTLSSGVFSWSSKKQEIVAQSTAEAEF
Sbjct: 1150 VKFTRGKEFKLIGFSDSDWGGSIDDMRSTLGYCFTLSSGVFSWSSKKQEIVAQSTAEAEF 1209

Query: 488  IAATATANQALWLRKILLDLDLKQKKSTEILVDNKAAIAISHNPVFYKKTKHFNIKLFFL 547
            IAATATANQALWLRKILLDLDL+QKKSTEILVDNKAAIAISHNPVFYKKTKHFNIKLFFL
Sbjct: 1210 IAATATANQALWLRKILLDLDLEQKKSTEILVDNKAAIAISHNPVFYKKTKHFNIKLFFL 1269

Query: 548  REVQKSGEVILVYCKTEDQVADILTKPLPTCKFEFLRSKLGVCNS 593
            REVQKSGEVILVYCKTEDQVADILTKPLPTCKFEFLRSKLGVCNS
Sbjct: 1270 REVQKSGEVILVYCKTEDQVADILTKPLPTCKFEFLRSKLGVCNS 1314

[Close]

BLAST of Cmc05g0122971 vs. ExPASy TrEMBL
Match: A0A5D3DBU0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold392G00950 PE=4 SV=1)

HSP 1 Score: 1151.3 bits (2977), Expect = 0.0e+00
Identity = 579/585 (98.97%), Postives = 583/585 (99.66%), Query Frame = 0


Query: 8    KSGKIVVSRDVHFEEDEEWNFDDAEKKGQTLEKMKFKFFDSSIEEEDDRQNEIVDDASVR 67
            ++GKIVVSRDVHFEEDEEWNFDDAEKKGQTLEKMKFKFFDSSIEEEDDRQNEIVDDASVR
Sbjct: 846  QTGKIVVSRDVHFEEDEEWNFDDAEKKGQTLEKMKFKFFDSSIEEEDDRQNEIVDDASVR 905

Query: 68   GTRLLSDIYERCNVAVCEPANYAEAKKDQRWIAAMEEELSMIEKNKTWILVDRPQDRKVI 127
            GTRLLSDIYERCNVAVCEPANYAEAKKDQRWIAAMEEELSMIEKNKTWILVDRPQDRKVI
Sbjct: 906  GTRLLSDIYERCNVAVCEPANYAEAKKDQRWIAAMEEELSMIEKNKTWILVDRPQDRKVI 965

Query: 128  GVKWVFRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKG 187
            GVKWVFRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKG
Sbjct: 966  GVKWVFRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKG 1025

Query: 188  WKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGERNKVYLLKKALYGLKQAPRAWYSKID 247
            WKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGERNKVYLLKKALYGLKQAPRAWYSKID
Sbjct: 1026 WKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGERNKVYLLKKALYGLKQAPRAWYSKID 1085

Query: 248  EHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDDLLVTGNNADHIQNFKWEMMKMFEMT 307
            EHLLSLGFLKSLSESTLYVKHNGT+ILIVSLYVDDLLVTGNNADHIQNFKWEMMKMFEMT
Sbjct: 1086 EHLLSLGFLKSLSESTLYVKHNGTNILIVSLYVDDLLVTGNNADHIQNFKWEMMKMFEMT 1145

Query: 308  DLGLMSYFLGIEIKQGQGEVFICQKKYAKEILKKFKMDECKAVSTPMNQKEKLCKEDDAD 367
            DLGLMSYFLGIEIKQGQGEVFICQKKYAKEILKKFKMDECKAVSTPMNQKEKLCKED AD
Sbjct: 1146 DLGLMSYFLGIEIKQGQGEVFICQKKYAKEILKKFKMDECKAVSTPMNQKEKLCKEDGAD 1205

Query: 368  KVDEGYFRSLIGCLMYLTATRPDILNAVSILSRFMHCASELHLKAAKRVIRYVKGTSDFG 427
            KVDEGYFRSLIGCLMYLTATRPDILNAVSILSRFMHCASELHLKAAKRVIRYVKGTSDFG
Sbjct: 1206 KVDEGYFRSLIGCLMYLTATRPDILNAVSILSRFMHCASELHLKAAKRVIRYVKGTSDFG 1265

Query: 428  VKFTRGKEFKLIGFSDSDWGSSIDDMRSTLGYCFTLSSGVFSWSSKKQEIVAQSTAEAEF 487
            VKFTRGKEFKLIGFSDSDWG SIDDMRSTLGYCFTLSSGVFSWSSKKQEIVAQSTAEAEF
Sbjct: 1266 VKFTRGKEFKLIGFSDSDWGGSIDDMRSTLGYCFTLSSGVFSWSSKKQEIVAQSTAEAEF 1325

Query: 488  IAATATANQALWLRKILLDLDLKQKKSTEILVDNKAAIAISHNPVFYKKTKHFNIKLFFL 547
            IAATATANQALWLRKILLDLDL+QKKSTEILVDNKAAIAISHNPVFYKKTKHFNIKLFFL
Sbjct: 1326 IAATATANQALWLRKILLDLDLEQKKSTEILVDNKAAIAISHNPVFYKKTKHFNIKLFFL 1385

Query: 548  REVQKSGEVILVYCKTEDQVADILTKPLPTCKFEFLRSKLGVCNS 593
            REVQKSGEVILVYCKTEDQVADILTKPLPTCKFEFLRSKLGVCNS
Sbjct: 1386 REVQKSGEVILVYCKTEDQVADILTKPLPTCKFEFLRSKLGVCNS 1430

[Close]

BLAST of Cmc05g0122971 vs. ExPASy TrEMBL
Match: A0A5A7SLQ2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold541G00240 PE=4 SV=1)

HSP 1 Score: 1148.7 bits (2970), Expect = 0.0e+00
Identity = 578/585 (98.80%), Postives = 582/585 (99.49%), Query Frame = 0


Query: 8    KSGKIVVSRDVHFEEDEEWNFDDAEKKGQTLEKMKFKFFDSSIEEEDDRQNEIVDDASVR 67
            ++GKIVVSRDVHFEEDEEWNFDDAEKKGQTLEKMKFKFFDSSIEEEDDRQNEIVDDASVR
Sbjct: 702  QTGKIVVSRDVHFEEDEEWNFDDAEKKGQTLEKMKFKFFDSSIEEEDDRQNEIVDDASVR 761

Query: 68   GTRLLSDIYERCNVAVCEPANYAEAKKDQRWIAAMEEELSMIEKNKTWILVDRPQDRKVI 127
            GTRLLSDIYERCNVAVCEPANYAEAKKDQRWIAAMEEELSMIEKNKTWILVDRPQDRKVI
Sbjct: 762  GTRLLSDIYERCNVAVCEPANYAEAKKDQRWIAAMEEELSMIEKNKTWILVDRPQDRKVI 821

Query: 128  GVKWVFRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKG 187
            GVKWVFRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKG
Sbjct: 822  GVKWVFRTKLNADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKG 881

Query: 188  WKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGERNKVYLLKKALYGLKQAPRAWYSKID 247
            WKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGERNKVYLLKKALYGLKQAPRAWYSKID
Sbjct: 882  WKLYQLDVKSAFLNGVLQEEIYVEQPEGCEKQGERNKVYLLKKALYGLKQAPRAWYSKID 941

Query: 248  EHLLSLGFLKSLSESTLYVKHNGTSILIVSLYVDDLLVTGNNADHIQNFKWEMMKMFEMT 307
            EHLLSLGFLKSLSESTLYVKHNGT+ILIVSLYVDDLLVTGNNADHIQNFKWEMMKMFEMT
Sbjct: 942  EHLLSLGFLKSLSESTLYVKHNGTNILIVSLYVDDLLVTGNNADHIQNFKWEMMKMFEMT 1001

Query: 308  DLGLMSYFLGIEIKQGQGEVFICQKKYAKEILKKFKMDECKAVSTPMNQKEKLCKEDDAD 367
            DLGLMSYFLGIEIKQGQGEVFICQKKYAKEILKKFKMDECKAVSTPMNQKEKLCKED AD
Sbjct: 1002 DLGLMSYFLGIEIKQGQGEVFICQKKYAKEILKKFKMDECKAVSTPMNQKEKLCKEDGAD 1061

Query: 368  KVDEGYFRSLIGCLMYLTATRPDILNAVSILSRFMHCASELHLKAAKRVIRYVKGTSDFG 427
            KVDEGYFRSLIGCLMYLTATRPDILNAVSILSRFMHCASELHLKAAKRVIRYVKGTSDFG
Sbjct: 1062 KVDEGYFRSLIGCLMYLTATRPDILNAVSILSRFMHCASELHLKAAKRVIRYVKGTSDFG 1121

Query: 428  VKFTRGKEFKLIGFSDSDWGSSIDDMRSTLGYCFTLSSGVFSWSSKKQEIVAQSTAEAEF 487
            VKFTRGKEFKLIGFSDSDWG SIDDMRSTLGYCFTLSSGVFSWSSKKQEIVAQSTAEAEF
Sbjct: 1122 VKFTRGKEFKLIGFSDSDWGGSIDDMRSTLGYCFTLSSGVFSWSSKKQEIVAQSTAEAEF 1181

Query: 488  IAATATANQALWLRKILLDLDLKQKKSTEILVDNKAAIAISHNPVFYKKTKHFNIKLFFL 547
            IAATATANQALWLRKILLDLDL+QKKSTEILVDNKAAIAISHNPVFYKKTKHFNIKLFFL
Sbjct: 1182 IAATATANQALWLRKILLDLDLEQKKSTEILVDNKAAIAISHNPVFYKKTKHFNIKLFFL 1241

Query: 548  REVQKSGEVILVYCKTEDQVADILTKPLPTCKFEFLRSKLGVCNS 593
            REVQKSG VILVYCKTEDQVADILTKPLPTCKFEFLRSKLGVCNS
Sbjct: 1242 REVQKSGGVILVYCKTEDQVADILTKPLPTCKFEFLRSKLGVCNS 1286

[Close]

BLAST of Cmc05g0122971 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 355.5 bits (911), Expect = 8.1e-98
Identity = 190/475 (40.00%), Postives = 286/475 (60.21%), Query Frame = 0


Query: 79  CNVAVCEPANYAEAKKDQRWIAAMEEELSMIEKNKTWILVDRPQDRKVIGVKWVFRTKLN 138
           C     EP+ Y EAK+   W  AM++E+  +E   TW +   P ++K IG KWV++ K N
Sbjct: 79  CIAKAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYN 138

Query: 139 ADGSINKHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQKGWKLYQLDVKSA 198
           +DG+I ++KARLV KGY Q  G+D+ +TF+PV ++ +++L+ AI+A   + L+QLD+ +A
Sbjct: 139 SDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNA 198

Query: 199 FLNGVLQEEIYVEQPEG-CEKQGER---NKVYLLKKALYGLKQAPRAWYSKIDEHLLSLG 258
           FLNG L EEIY++ P G   +QG+    N V  LKK++YGLKQA R W+ K    L+  G
Sbjct: 199 FLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFG 258

Query: 259 FLKSLSESTLYVKHNGTSILIVSLYVDDLLVTGNNADHIQNFKWEMMKMFEMTDLGLMSY 318
           F++S S+ T ++K   T  L V +YVDD+++  NN   +   K ++   F++ DLG + Y
Sbjct: 259 FVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLGPLKY 318

Query: 319 FLGIEIKQGQGEVFICQKKYAKEILKKFKMDECKAVSTPMNQKEKLCKEDDADKVDEGYF 378
           FLG+EI +    + ICQ+KYA ++L +  +  CK  S PM+           D VD   +
Sbjct: 319 FLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAHSGGDFVDAKAY 378

Query: 379 RSLIGCLMYLTATRPDILNAVSILSRFMHCASELHLKAAKRVIRYVKGTSDFGVKFTRGK 438
           R LIG LMYL  TR DI  AV+ LS+F       H +A  +++ Y+KGT   G+ ++   
Sbjct: 379 RRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYSSQA 438

Query: 439 EFKLIGFSDSDWGSSIDDMRSTLGYCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATA 498
           E +L  FSD+ + S  D  RST GYC  L + + SW SKKQ++V++S+AEAE+ A +   
Sbjct: 439 EMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRALSFAT 498

Query: 499 NQALWLRKILLDLDLKQKKSTEILVDNKAAIAISHNPVFYKKTKHFNIKLFFLRE 550
           ++ +WL +   +L L   K T +  DN AAI I+ N VF+++TKH       +RE
Sbjct: 499 DEMMWLAQFFRELQLPLSKPTLLFCDNTAAIHIATNAVFHERTKHIESDCHSVRE 553

[Close]

BLAST of Cmc05g0122971 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 156.0 bits (393), Expect = 9.4e-38
Identity = 88/222 (39.64%), Postives = 125/222 (56.31%), Query Frame = 0


Query: 278 LYVDDLLVTGNNADHIQNFKWEMMKMFEMTDLGLMSYFLGIEIKQGQGEVFICQKKYAKE 337
           LYVDD+L+TG++   +    +++   F M DLG + YFLGI+IK     +F+ Q KYA++
Sbjct: 5   LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 338 ILKKFKMDECKAVSTPMNQKEKLCKEDDADKVDEGYFRSLIGCLMYLTATRPDILNAVSI 397
           IL    M +CK +STP+  K        A   D   FRS++G L YLT TRPDI  AV+I
Sbjct: 65  ILNNAGMLDCKPMSTPLPLKLN-SSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNI 124

Query: 398 LSRFMHCASELHLKAAKRVIRYVKGTSDFGVKFTRGKEFKLIGFSDSDWGSSIDDMRSTL 457
           + + MH  +       KRV+RYVKGT   G+   +  +  +  F DSDW       RST 
Sbjct: 125 VCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTT 184

Query: 458 GYCFTLSSGVFSWSSKKQEIVAQSTAEAEFIAATATANQALW 500
           G+C  L   + SWS+K+Q  V++S+ E E+ A   TA +  W
Sbjct: 185 GFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELTW 225

[Close]

BLAST of Cmc05g0122971 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 102.8 bits (255), Expect = 9.5e-22
Identity = 47/101 (46.53%), Postives = 70/101 (69.31%), Query Frame = 0


Query: 85  EPANYAEAKKDQRWIAAMEEELSMIEKNKTWILVDRPQDRKVIGVKWVFRTKLNADGSIN 144
           EP +   A KD  W  AM+EEL  + +NKTWILV  P ++ ++G KWVF+TKL++DG+++
Sbjct: 27  EPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLD 86

Query: 145 KHKARLVVKGYAQIFGVDYSDTFAPVARMDTIRLLFAIAAQ 186
           + KARLV KG+ Q  G+ + +T++PV R  TIR +  +A Q
Sbjct: 87  RLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTILNVAQQ 127

[Close]

BLAST of Cmc05g0122971 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 68.2 bits (165), Expect = 2.6e-11
Identity = 33/79 (41.77%), Postives = 48/79 (60.76%), Query Frame = 0


Query: 382 MYLTATRPDILNAVSILSRFMHCASELHLKAAKRVIRYVKGTSDFGVKFTRGKEFKLIGF 441
           MYLT TRPD+  AV+ LS+F   +    ++A  +V+ YVKGT   G+ ++   + +L  F
Sbjct: 1   MYLTITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAF 60

Query: 442 SDSDWGSSIDDMRSTLGYC 461
           +DSDW S  D  RS  G+C
Sbjct: 61  ADSDWASCPDTRRSVTGFC 79

The following BLAST results are available for this feature:

BLAST of Cmc05g0122971 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0041382.1	0.0e+00	100.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYJ95793.1	0.0e+00	98.97	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK21117.1	0.0e+00	98.97	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0036309.1	0.0e+00	98.97	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0025181.1	0.0e+00	98.80	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc05g0122971 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	4.2e-107	40.28	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	2.8e-103	38.64	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	6.5e-100	38.00	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P10978	6.7e-97	39.08	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P25600	6.4e-39	32.89	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc05g0122971 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TD67	0.0e+00	100.00	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3E2V7	0.0e+00	98.97	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DMJ1	0.0e+00	98.97	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DBU0	0.0e+00	98.97	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SLQ2	0.0e+00	98.80	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc05g0122971 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	8.1e-98	40.00	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	9.4e-38	39.64	DNA/RNA polymerases superfamily protein	[more]
ATMG00820.1	9.5e-22	46.53	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]
ATMG00240.1	2.6e-11	41.77	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 112..354 e-value: 7.6E-88 score: 294.2
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 95..471
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 439..577 e-value: 5.53071E-69 score: 217.721
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 111..544

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc05g0122971.1	Cmc05g0122971.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0032508	DNA duplex unwinding
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006303	double-strand break repair via nonhomologous end joining
biological_process	GO:0007165	signal transduction
biological_process	GO:0000723	telomere maintenance
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016020	membrane
cellular_component	GO:0043564	Ku70:Ku80 complex
molecular_function	GO:0140359	ABC-type transporter activity
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003684	damaged DNA binding
molecular_function	GO:0003678	DNA helicase activity
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0042162	telomeric DNA binding
molecular_function	GO:0008270	zinc ion binding