Cmc05g0122651 (gene) Melon (Charmono) v1.1

Overview
NameCmc05g0122651
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionUnknown protein
LocationCMiso1.1chr05: 636497 .. 638372 (+)
RNA-Seq ExpressionCmc05g0122651
SyntenyCmc05g0122651
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GATAAAATTCCAAGAAAATGCCTCATCAGAGAAGTGGGTTACATTTACACAAAATTAATCGCTTATGCAAGCACCTCTCTCGAAGGAGCCATATCTTTACAAACAGTCAGTTTCCTGATACAGAATCCTCCCTTGTTTCTTCACACCCTTCCTTTACATCTAAAGCTATTTTTACAGGTACAACTCTATTCACTTCTGCTTCATCATTGGCCATGGCTTCACTTCCAACCCCTGGATCCGTGTGCAGAATATTACCCAAGTTTTCATTTGTATCGTCACATTCATTTACCTTCCTCGAAATAAGTTCACCCTTGAATTTTTCATCTTTTGTCACACAGTCTTCCGGAATCTGTTCATTTGATTCCTTCACCATTTCATCATTCACTATGTATTTCTCTTCAACCACTTTCCCTCTCTTGAAATCTTCACCCACACATTTTTCCCCACCCTCAATCTCTAAGACTTCTTCATCTTCCTCTTTAGAATCAACACCGACATCTTGGTGTCGTCTAATTTCAGATACATACTCCATCTCCAACCCTCCATCACTCTCATTCTCAGATACGTTCTCCACTACTTCCTCATTCACATCATCAATAGCTGGGTTTTGCCCCTCGAGAAGTTGCAACTTCCTCCTCAAGTCAACAAGCTCTCTCTCCATAAGAAAAAGTCTCTCCTTCAGTGTCAAGTTCTCCTCCTCCAACTGAGCTATATGGCTATCCTGATCATCGACCCTATTTTCCAAACAGTTATTATACTCTACTCCATAGTTCTGGTATATCATTTCAAATCGGCTCAAGTCATGGTCCAATCTACGTTCTACCTCCAGGTGTTCCTCTACATCACTATCACTCGAACCACCACCAACTTCCTCTTCTTCCTCATCCTGCACTTCCACCTTATTCTCAGACCCCCGTAGCCTTATCAACCCTTTCATTGATCCATAACCATCAACACCCCATTCCTCCTTGGCCATATCACCCAATGCCTCCCTTGAAGGGGAAAACATTGGAGTAGGAAGCACAGCGGGTGTTACAGGACTAGGAGATACAAGTGAAGCGATCCCACCAGACTTCTTTGCACGAATTAAAAAAGAAGTGGTATTCCGAGGTGCATAAGGTGCAAACCTATTGCCAAACTTCTTTTTAGAGTAAAACTTTCTAGCCCTTAAACGATTTTGAGACTGCAGCTCATGAAGACTTGGAGGTTGATAACCTGCAGCATTATTTGGACCACTTATGGAACCCGGTAAAGGTTTTTCCATTCTCCTATTGTTTATCCTTTTGTCACTAACGCCTTTTCCCTTCCAATTGCCTCGACCCGATCTTGACTGCTTCATATTTCCATAGTTAGGTTTTGGGAAGTTGCGGTACTTCTTGTTCGGATCCAAAGGGGCTTGTGGATGTGCCCATACCTTATAGTTGCCACTCATCATAGGTGGCAGAGAATGATTCATGATCATCTGGGATTGCTGCATGGCCTGAGGTTGAGGCAGATGATTTGCCTGGTTGATGGCCTGTGACTGAGACATTATCTGAGAATGGTTCATTAGGCTTTGGTTCAGAAATTGAGGTTGATTAATCACCTGTGGCTGGTTCATAACTTGAGACTGAGGCTGGTTCATAACTTGAGACTGATTGATTACATGAGGCTGGTTTGCCATTGGTGGATGTCCCATACTAATCATTTCAGATCTTAGATGAAGATTTGCCATTTTCTGTCTATCCTGTATAAGAAATGAAAAGGCAGTTAGGAAATTGTTTAGAAGAATAGCTTCCACTAAAAAAATTATGCTTGAATTTTTATTTATTTATTTATTTATTTGGATAAGAAACGATTACATTGATAATGAAATAATCCAAAGAGATAGAAAAAG

mRNA sequence

GATAAAATTCCAAGAAAATGCCTCATCAGAGAAGTGGGTTACATTTACACAAAATTAATCGCTTATGCAAGCACCTCTCTCGAAGGAGCCATATCTTTACAAACAGTCAGTTTCCTGATACAGAATCCTCCCTTGTTTCTTCACACCCTTCCTTTACATCTAAAGCTATTTTTACAGGTACAACTCTATTCACTTCTGCTTCATCATTGGCCATGGCTTCACTTCCAACCCCTGGATCCGTGTGCAGAATATTACCCAAGTTTTCATTTGTATCGTCACATTCATTTACCTTCCTCGAAATAAGTTCACCCTTGAATTTTTCATCTTTTGTCACACAGTCTTCCGGAATCTGTTCATTTGATTCCTTCACCATTTCATCATTCACTATGTATTTCTCTTCAACCACTTTCCCTCTCTTGAAATCTTCACCCACACATTTTTCCCCACCCTCAATCTCTAAGACTTCTTCATCTTCCTCTTTAGAATCAACACCGACATCTTGGTGTCGTCTAATTTCAGATACATACTCCATCTCCAACCCTCCATCACTCTCATTCTCAGATACGTTCTCCACTACTTCCTCATTCACATCATCAATAGCTGGGTTTTGCCCCTCGAGAAGTTGCAACTTCCTCCTCAAGTCAACAAGCTCTCTCTCCATAAGAAAAAGTCTCTCCTTCAGTGTCAAGTTCTCCTCCTCCAACTGAGCTATATGGCTATCCTGATCATCGACCCTATTTTCCAAACAGTTATTATACTCTACTCCATAGTTCTGGTATATCATTTCAAATCGGCTCAAGTCATGGTCCAATCTACGTTCTACCTCCAGGTGTTCCTCTACATCACTATCACTCGAACCACCACCAACTTCCTCTTCTTCCTCATCCTGCACTTCCACCTTATTCTCAGACCCCCGTAGCCTTATCAACCCTTTCATTGATCCATAACCATCAACACCCCATTCCTCCTTGGCCATATCACCCAATGCCTCCCTTGAAGGGGAAAACATTGGAGTAGGAAGCACAGCGGGTGTTACAGGACTAGGAGATACAAGTGAAGCGATCCCACCAGACTTCTTTGCACGAATTAAAAAAGAAGTGGTATTCCGAGGTGCATAAGGTGCAAACCTATTGCCAAACTTCTTTTTAGAGTAAAACTTTCTAGCCCTTAAACGATTTTGAGACTGCAGCTCATGAAGACTTGGAGGTTGATAACCTGCAGCATTATTTGGACCACTTATGGAACCCGGTTTTGGGAAGTTGCGGTACTTCTTGTTCGGATCCAAAGGGGCTTGTGGATGTGCCCATACCTTATAGTTGCCACTCATCATAGGTGGCAGAGAATGATTCATGATCATCTGGGATTGCTGCATGGCCTGAGGTTGAGGCAGATGATTTGCCTGGTTGATGGCCTGTGACTGAGACATTATCTGAGAATGGTTCATTAGGCTTTGGTTCAGAAATTGAGGTTGATTAATCACCTGTGGCTGGTTCATAACTTGAGACTGAGGCTGGTTCATAACTTGAGACTGATTGATTACATGAGGCTGGTTTGCCATTGGTGGATGTCCCATACTAATCATTTCAGATCTTAGATGAAGATTTGCCATTTTCTGTCTATCCTGTATAAGAAATGAAAAGGCAGTTAGGAAATTGTTTAGAAGAATAGCTTCCACTAAAAAAATTATGCTTGAATTTTTATTTATTTATTTATTTATTTGGATAAGAAACGATTACATTGATAATGAAATAATCCAAAGAGATAGAAAAAG

Coding sequence (CDS)

ATGCCTCATCAGAGAAGTGGGTTACATTTACACAAAATTAATCGCTTATGCAAGCACCTCTCTCGAAGGAGCCATATCTTTACAAACAGTCAGTTTCCTGATACAGAATCCTCCCTTGTTTCTTCACACCCTTCCTTTACATCTAAAGCTATTTTTACAGGTACAACTCTATTCACTTCTGCTTCATCATTGGCCATGGCTTCACTTCCAACCCCTGGATCCGTGTGCAGAATATTACCCAAGTTTTCATTTGTATCGTCACATTCATTTACCTTCCTCGAAATAAGTTCACCCTTGAATTTTTCATCTTTTGTCACACAGTCTTCCGGAATCTGTTCATTTGATTCCTTCACCATTTCATCATTCACTATGTATTTCTCTTCAACCACTTTCCCTCTCTTGAAATCTTCACCCACACATTTTTCCCCACCCTCAATCTCTAAGACTTCTTCATCTTCCTCTTTAGAATCAACACCGACATCTTGGTGTCGTCTAATTTCAGATACATACTCCATCTCCAACCCTCCATCACTCTCATTCTCAGATACGTTCTCCACTACTTCCTCATTCACATCATCAATAGCTGGGTTTTGCCCCTCGAGAAGTTGCAACTTCCTCCTCAAGTCAACAAGCTCTCTCTCCATAAGAAAAAGTCTCTCCTTCAGTGTCAAGTTCTCCTCCTCCAACTGA

Protein sequence

MPHQRSGLHLHKINRLCKHLSRRSHIFTNSQFPDTESSLVSSHPSFTSKAIFTGTTLFTSASSLAMASLPTPGSVCRILPKFSFVSSHSFTFLEISSPLNFSSFVTQSSGICSFDSFTISSFTMYFSSTTFPLLKSSPTHFSPPSISKTSSSSSLESTPTSWCRLISDTYSISNPPSLSFSDTFSTTSSFTSSIAGFCPSRSCNFLLKSTSSLSIRKSLSFSVKFSSSN
Homology
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BLAST of Cmc05g0122651 vs. ExPASy TrEMBL
Match: A0A0F7UL79 (Uncharacterized ATP-dependent helicase OS=Neospora caninum (strain Liverpool) OX=572307 GN=BN1204_054610 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 7.8e-04
Identity = 77/218 (35.32%), Postives = 113/218 (51.83%), Query Frame = 0 

Query: 24   SHIFTNSQFPDTESSLVSSHPSFTSKAIFTGTTLFTSAS-SLAMASLPTPGSVCRILPKF 83
            S  F++S F    SS  S+ PS +S +  + ++  +S+S S + +S     S        
Sbjct: 2074 SSSFSSSSFSSFSSSFSSASPSSSSSSSSSSSSSSSSSSFSSSFSSASPSSSSSSSSSSS 2133

Query: 84   SFVSSHSFTFLEISSPLNFSSFVTQSSGICSF------DSFTISSFTMYFSSTTFPLLKS 143
            S  SS SF+    SSP +  S    SS   SF       S + SS +   SS++F     
Sbjct: 2134 SSSSSSSFSSSSSSSPSSSPSSSFSSSSFSSFSSSSSSSSSSSSSSSSSSSSSSFSSASP 2193

Query: 144  SPTHFSPPSISKTSSSSSLES---TPTSWCRLI--SDTYSISNPPSLSFSDTFSTTSSFT 203
            SP+ FS    S +SSSSS  S   +P+S+   +  S ++S S+P S SFS +FS++SSF+
Sbjct: 2194 SPSSFSSSFSSSSSSSSSFSSASPSPSSFSSSLSSSSSFSSSSPSSSSFSSSFSSSSSFS 2253

Query: 204  SSIAGFCPSRSCNFLLKSTSSLSIRKSLSFSVKFSSSN 230
            SS++   PS S +  L S+SS S     SFS  FSSS+
Sbjct: 2254 SSLSSSSPSSSSS--LSSSSSSSSSSFSSFSSSFSSSS 2289

The following BLAST results are available for this feature:
BLAST of Cmc05g0122651 vs.
Match NameE-valueIdentityDescription
BLAST of Cmc05g0122651 vs.
Match NameE-valueIdentityDescription
BLAST of Cmc05g0122651 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0F7UL797.8e-0435.32Uncharacterized ATP-dependent helicase OS=Neospora caninum (strain Liverpool) OX... [more]
BLAST of Cmc05g0122651 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc05g0122651.1Cmc05g0122651.1mRNA