Cmc04g0118951 (gene) Melon (Charmono) v1.1

Overview
NameCmc04g0118951
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionUnknown protein
LocationCMiso1.1chr04: 35356709 .. 35357817 (-)
RNA-Seq ExpressionCmc04g0118951
SyntenyCmc04g0118951
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGGTGAGTAGAAATCTAGCCCCAATTCTCTTTGCCAGGCCAAGCATATTCAAGGTACCCATTACATTTGTCTTGTGATAATTGGTTAAGGATATCCAGGCAAAAACATAATAATTCTAACAGCAAAAATTCTTCTTAAAATGCAAAGAAAGCTAACGCAAGAAGCAAGAATCTGAAAATGGAACTACTGGAAATAGGATATAATAGTCTTGACAGGATTGTACTTGTAATGAACAGGAGATGCTGGACACGCCAAGTGATAGATTTGATCCACCTCTAAAAGAATTGGCTCAACCACATCATGTCGAATCAGCTCGAATCGAGGATTTCCCAGATGATGCACCAAATTATCCTTTCTACCAGTGAAGAAGTTATCAATAACAATCACATCATCCCCTCTTTCAATTAACTTATCCACAAGATGACTTCCTACAAATCCAGCTCCACCAGTGACAACAATCCTCAACCTTCGCCGCCCAATACCGACGGGAACCCTTCCCCCCGTTTTCCCAAATCCATATATCCCCGACCCCGTAATCTGGTCCCTGCTCGTCAAACCTGTAGAAAACGATCTGCGAATTGCAGACCCAGCTTCAGAAGGGCCAATACGGGACAAGGAGGGCTGAAGGATGAAGAAGGTAGAGCCAATCAAAATGCCGACAAAAACAAAGAGAAGTCTCTGCTCTCTGAAAAGATAGTTGATGGATCTGGGGAGAGATCTGGGGTGTTTGAGAGCTTTTGGGGAATACGGCGATGTCGGACCCGGCGGAACCTCTTCATCCCGCCGGTGATTAATGCTGGATTGCTTATGGAGCTGTTTGATGCTCTGCATTGCTGTGTGATGTGTTGTTTCACCGCAAATTCTGTATGATATCTGAGATCAAGAAGAAAACGAGTGGAATTGGGATTTTGGTAGTGAGAATTAGGATGAAATTTGGATGAAAAGTTGAAGTTTAGTGAAAATTAAGATGGAATTTGAACCATTAGAGACCTGAGAGATCGCCAGAATTTCCCAACCGAAACGAATTAAAGGATCTGCCAATTGTAAATTCTTTTTTCCAATACCCTAAACCAATACTTCATTTCCCAAACTCCACATTTTGACCAAAT

mRNA sequence

TGGTGAGTAGAAATCTAGCCCCAATTCTCTTTGCCAGGCCAAGCATATTCAAGGATATAATAGTCTTGACAGGATTGTACTTGTAATGAACAGGAGATGCTGGACACGCCAAGTGATAGATTTGATCCACCTCTAAAAGAATTGGCTCAACCACATCATGTCGAATCAGCTCGAATCGAGGATTTCCCAGATGATGCACCAAATTATCCTTTCTACCAGTGAAGAAGTTATCAATAACAATCACATCATCCCCTCTTTCAATTAACTTATCCACAAGATGACTTCCTACAAATCCAGCTCCACCAGTGACAACAATCCTCAACCTTCGCCGCCCAATACCGACGGGAACCCTTCCCCCCGTTTTCCCAAATCCATATATCCCCGACCCCGTAATCTGGTCCCTGCTCGTCAAACCTGTAGAAAACGATCTGCGAATTGCAGACCCAGCTTCAGAAGGGCCAATACGGGACAAGGAGGGCTGAAGGATGAAGAAGGTAGAGCCAATCAAAATGCCGACAAAAACAAAGAGAAGTCTCTGCTCTCTGAAAAGATAGTTGATGGATCTGGGGAGAGATCTGGGGTGTTTGAGAGCTTTTGGGGAATACGGCGATGTCGGACCCGGCGGAACCTCTTCATCCCGCCGGTGATTAATGCTGGATTGCTTATGGAGCTGTTTGATGCTCTGCATTGCTGTGTGATGTGTTGTTTCACCGCAAATTCTGTATGATATCTGAGATCAAGAAGAAAACGAGTGGAATTGGGATTTTGGTAGTGAGAATTAGGATGAAATTTGGATGAAAAGTTGAAGTTTAGTGAAAATTAAGATGGAATTTGAACCATTAGAGACCTGAGAGATCGCCAGAATTTCCCAACCGAAACGAATTAAAGGATCTGCCAATTGTAAATTCTTTTTTCCAATACCCTAAACCAATACTTCATTTCCCAAACTCCACATTTTGACCAAAT

Coding sequence (CDS)

ATGACTTCCTACAAATCCAGCTCCACCAGTGACAACAATCCTCAACCTTCGCCGCCCAATACCGACGGGAACCCTTCCCCCCGTTTTCCCAAATCCATATATCCCCGACCCCGTAATCTGGTCCCTGCTCGTCAAACCTGTAGAAAACGATCTGCGAATTGCAGACCCAGCTTCAGAAGGGCCAATACGGGACAAGGAGGGCTGAAGGATGAAGAAGGTAGAGCCAATCAAAATGCCGACAAAAACAAAGAGAAGTCTCTGCTCTCTGAAAAGATAGTTGATGGATCTGGGGAGAGATCTGGGGTGTTTGAGAGCTTTTGGGGAATACGGCGATGTCGGACCCGGCGGAACCTCTTCATCCCGCCGGTGATTAATGCTGGATTGCTTATGGAGCTGTTTGATGCTCTGCATTGCTGTGTGATGTGTTGTTTCACCGCAAATTCTGTATGA

Protein sequence

MTSYKSSSTSDNNPQPSPPNTDGNPSPRFPKSIYPRPRNLVPARQTCRKRSANCRPSFRRANTGQGGLKDEEGRANQNADKNKEKSLLSEKIVDGSGERSGVFESFWGIRRCRTRRNLFIPPVINAGLLMELFDALHCCVMCCFTANSV
Homology
BLAST of Cmc04g0118951 vs. NCBI nr
Match: RAL50628.1 (hypothetical protein DM860_015775 [Cuscuta australis])

HSP 1 Score: 67.8 bits (164), Expect = 9.1e-08
Identity = 57/142 (40.14%), Postives = 78/142 (54.93%), Query Frame = 0

Query: 9   TSDNNPQPSPPNTDGNPSPRFPKSIYPR--PRNLVPARQTCRKRSANCRPSFRRANTGQG 68
           + D+N  P PPN   +P    P +I  R   RN      T R RS + R   R A   + 
Sbjct: 73  SGDHNAHPPPPNPHRHPPD--PGAIPGRGVRRNGFLVGDTKRPRSRDLR---RGAEMRKA 132

Query: 69  GLKDEEGRANQNADKNKEKSLLSEKIVDGSGERSGVFESFWGIRRCRTRRNLFIPPVINA 128
           GL DEE  AN+NA K++++ L S++IVDGSG+RS VF+ F G+RR R  R   I  VI+A
Sbjct: 133 GLDDEESGANENAHKDEQEPLFSKEIVDGSGQRSRVFQGFGGVRR-RALRGFLISSVIHA 192

Query: 129 GLLMELFDALHCCVMCCFTANS 149
            LLM+        ++C F+  S
Sbjct: 193 PLLMQFHGDSLPFLLCLFSFTS 208

BLAST of Cmc04g0118951 vs. NCBI nr
Match: VFQ85853.1 (unnamed protein product [Cuscuta campestris])

HSP 1 Score: 64.3 bits (155), Expect = 1.0e-06
Identity = 54/142 (38.03%), Postives = 76/142 (53.52%), Query Frame = 0

Query: 9   TSDNNPQPSPPNTDGNPSPRFPKSIYPRP-----RNLVPARQTCRKRSANCRPSFRRANT 68
           + D+N  P PPN   +P    P ++   P     RN      T R RS + R     A  
Sbjct: 73  SGDHNAHPPPPNPHRHPPD--PGAVPATPGMGVRRNGFLVGDTKRPRSRDLRIG---AEM 132

Query: 69  GQGGLKDEEGRANQNADKNKEKSLLSEKIVDGSGERSGVFESFWGIRRCRTRRNLFIPPV 128
            + GL DEE  AN+NA K++++ L SE+IVDGSG+RS VF+ F G+RR R  R   I  V
Sbjct: 133 RKAGLDDEESGANKNAHKDEQEPLFSEEIVDGSGQRSRVFQGFGGVRR-RALRGFLISSV 192

Query: 129 INAGLLMELFDALHCCVMCCFT 146
           I+A LL++        ++C F+
Sbjct: 193 IHAPLLVQFHGDSLPFLLCLFS 208

BLAST of Cmc04g0118951 vs. ExPASy TrEMBL
Match: A0A328E1H2 (Uncharacterized protein OS=Cuscuta australis OX=267555 GN=DM860_015775 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 4.4e-08
Identity = 57/142 (40.14%), Postives = 78/142 (54.93%), Query Frame = 0

Query: 9   TSDNNPQPSPPNTDGNPSPRFPKSIYPR--PRNLVPARQTCRKRSANCRPSFRRANTGQG 68
           + D+N  P PPN   +P    P +I  R   RN      T R RS + R   R A   + 
Sbjct: 73  SGDHNAHPPPPNPHRHPPD--PGAIPGRGVRRNGFLVGDTKRPRSRDLR---RGAEMRKA 132

Query: 69  GLKDEEGRANQNADKNKEKSLLSEKIVDGSGERSGVFESFWGIRRCRTRRNLFIPPVINA 128
           GL DEE  AN+NA K++++ L S++IVDGSG+RS VF+ F G+RR R  R   I  VI+A
Sbjct: 133 GLDDEESGANENAHKDEQEPLFSKEIVDGSGQRSRVFQGFGGVRR-RALRGFLISSVIHA 192

Query: 129 GLLMELFDALHCCVMCCFTANS 149
            LLM+        ++C F+  S
Sbjct: 193 PLLMQFHGDSLPFLLCLFSFTS 208

BLAST of Cmc04g0118951 vs. ExPASy TrEMBL
Match: A0A484MAB2 (Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS27629 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 4.9e-07
Identity = 54/142 (38.03%), Postives = 76/142 (53.52%), Query Frame = 0

Query: 9   TSDNNPQPSPPNTDGNPSPRFPKSIYPRP-----RNLVPARQTCRKRSANCRPSFRRANT 68
           + D+N  P PPN   +P    P ++   P     RN      T R RS + R     A  
Sbjct: 73  SGDHNAHPPPPNPHRHPPD--PGAVPATPGMGVRRNGFLVGDTKRPRSRDLRIG---AEM 132

Query: 69  GQGGLKDEEGRANQNADKNKEKSLLSEKIVDGSGERSGVFESFWGIRRCRTRRNLFIPPV 128
            + GL DEE  AN+NA K++++ L SE+IVDGSG+RS VF+ F G+RR R  R   I  V
Sbjct: 133 RKAGLDDEESGANKNAHKDEQEPLFSEEIVDGSGQRSRVFQGFGGVRR-RALRGFLISSV 192

Query: 129 INAGLLMELFDALHCCVMCCFT 146
           I+A LL++        ++C F+
Sbjct: 193 IHAPLLVQFHGDSLPFLLCLFS 208

BLAST of Cmc04g0118951 vs. ExPASy TrEMBL
Match: A0A314UCW3 (Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_35892 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 5.1e-04
Identity = 28/47 (59.57%), Postives = 38/47 (80.85%), Query Frame = 0

Query: 59  RRANTGQGGLKDEEGRANQNADKNKEKSLLSEKIVDGSGERSGVFES 106
           R A   +GGL+DEEG AN+NA++++E+ L  E++VDGSGERS VFES
Sbjct: 119 RWAEAVEGGLEDEEGGANENANEDEEEPLFFEEVVDGSGERSRVFES 165

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RAL50628.19.1e-0840.14hypothetical protein DM860_015775 [Cuscuta australis][more]
VFQ85853.11.0e-0638.03unnamed protein product [Cuscuta campestris][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A328E1H24.4e-0840.14Uncharacterized protein OS=Cuscuta australis OX=267555 GN=DM860_015775 PE=4 SV=1[more]
A0A484MAB24.9e-0738.03Uncharacterized protein OS=Cuscuta campestris OX=132261 GN=CCAM_LOCUS27629 PE=4 ... [more]
A0A314UCW35.1e-0459.57Uncharacterized protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_358... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..17
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..91
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc04g0118951.1Cmc04g0118951.1mRNA