Cmc04g0117291 (gene) Melon (Charmono) v1.1

Overview
NameCmc04g0117291
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Descriptionembryonic protein DC-8 isoform X1
LocationCMiso1.1chr04: 34519970 .. 34520249 (-)
RNA-Seq ExpressionCmc04g0117291
SyntenyCmc04g0117291
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCTGTAGTTTCATTTCTTGACAACGAAACGTATGGATTGTTCTATTGCCAGAGGCCGTGGCGGGGAGGGAGAGGTGGTGGTAGGTTTGGAGGAGACACGACCGGGTGCGCTGGCCTCGACTTTGAAGCAGGCAGACGACATGGCGGGACAGTCGTTTAACGATGTGGGTCGAATGGATGAGGAGGAAGTTGTGCGTATAAAGGATCGTCAAGGCAAGATGTGAATCTGATGCGAAAATTCTCTAAGGGGGGCATTCTGTTTGTTGATCATATGATCTGCC

mRNA sequence

TCTGTAGTTTCATTTCTTGACAACGAAACGTATGGATTGTTCTATTGCCAGAGGCCGTGGCGGGGAGGGAGAGGTGGTGGTAGGTTTGGAGGAGACACGACCGGGTGCGCTGGCCTCGACTTTGAAGCAGGCAGACGACATGGCGGGACAGTCGTTTAACGATGTGGGTCGAATGGATGAGGAGGAAGTTGTGCGTATAAAGGATCGTCAAGGCAAGATGTGAATCTGATGCGAAAATTCTCTAAGGGGGGCATTCTGTTTGTTGATCATATGATCTGCC

Coding sequence (CDS)

ATGGATTGTTCTATTGCCAGAGGCCGTGGCGGGGAGGGAGAGGTGGTGGTAGGTTTGGAGGAGACACGACCGGGTGCGCTGGCCTCGACTTTGAAGCAGGCAGACGACATGGCGGGACAGTCGTTTAACGATGTGGGTCGAATGGATGAGGAGGAAGTTGTGCGTATAAAGGATCGTCAAGGCAAGATGTGA

Protein sequence

MDCSIARGRGGEGEVVVGLEETRPGALASTLKQADDMAGQSFNDVGRMDEEEVVRIKDRQGKM
Homology
[Close]
BLAST of Cmc04g0117291 vs. NCBI nr
Match: KAA0043937.1 (embryonic protein DC-8 isoform X1 [Cucumis melo var. makuwa] >TYK25202.1 embryonic protein DC-8 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 108.2 bits (269), Expect = 2.6e-20
Identity = 55/57 (96.49%), Postives = 55/57 (96.49%), Query Frame = 0 

Query: 7   RGRGGEGEVVVGLEETRPGALASTLKQADDMAGQSFNDVGRMDEEEVVRIKDRQGKM 64
           RGRGGEGEVVVGLEETRPGALASTLKQADDMAGQSFNDVGRMDEE VVR KDRQGKM
Sbjct: 474 RGRGGEGEVVVGLEETRPGALASTLKQADDMAGQSFNDVGRMDEEGVVRSKDRQGKM 530

[Close]
BLAST of Cmc04g0117291 vs. NCBI nr
Match: XP_008442777.1 (PREDICTED: embryonic protein DC-8 isoform X1 [Cucumis melo])

HSP 1 Score: 108.2 bits (269), Expect = 2.6e-20
Identity = 55/57 (96.49%), Postives = 55/57 (96.49%), Query Frame = 0 

Query: 7   RGRGGEGEVVVGLEETRPGALASTLKQADDMAGQSFNDVGRMDEEEVVRIKDRQGKM 64
           RGRGGEGEVVVGLEETRPGALASTLKQADDMAGQSFNDVGRMDEE VVR KDRQGKM
Sbjct: 434 RGRGGEGEVVVGLEETRPGALASTLKQADDMAGQSFNDVGRMDEEGVVRSKDRQGKM 490

[Close]
BLAST of Cmc04g0117291 vs. NCBI nr
Match: XP_008442778.1 (PREDICTED: embryonic protein DC-8 isoform X2 [Cucumis melo])

HSP 1 Score: 108.2 bits (269), Expect = 2.6e-20
Identity = 55/57 (96.49%), Postives = 55/57 (96.49%), Query Frame = 0 

Query: 7   RGRGGEGEVVVGLEETRPGALASTLKQADDMAGQSFNDVGRMDEEEVVRIKDRQGKM 64
           RGRGGEGEVVVGLEETRPGALASTLKQADDMAGQSFNDVGRMDEE VVR KDRQGKM
Sbjct: 431 RGRGGEGEVVVGLEETRPGALASTLKQADDMAGQSFNDVGRMDEEGVVRSKDRQGKM 487

[Close]
BLAST of Cmc04g0117291 vs. NCBI nr
Match: XP_038903631.1 (late embryogenesis abundant protein At3g53040-like isoform X1 [Benincasa hispida])

HSP 1 Score: 96.7 bits (239), Expect = 7.8e-17
Identity = 48/57 (84.21%), Postives = 52/57 (91.23%), Query Frame = 0 

Query: 7   RGRGGEGEVVVGLEETRPGALASTLKQADDMAGQSFNDVGRMDEEEVVRIKDRQGKM 64
           RG GGEG VVVGLEE+RPGALASTLK+ADDMAGQ+FNDVGR+DEE  VR KDRQGKM
Sbjct: 392 RGSGGEGAVVVGLEESRPGALASTLKEADDMAGQTFNDVGRVDEEGAVRSKDRQGKM 448

[Close]
BLAST of Cmc04g0117291 vs. NCBI nr
Match: XP_038903633.1 (late embryogenesis abundant protein At3g53040-like isoform X3 [Benincasa hispida])

HSP 1 Score: 96.7 bits (239), Expect = 7.8e-17
Identity = 48/57 (84.21%), Postives = 52/57 (91.23%), Query Frame = 0 

Query: 7   RGRGGEGEVVVGLEETRPGALASTLKQADDMAGQSFNDVGRMDEEEVVRIKDRQGKM 64
           RG GGEG VVVGLEE+RPGALASTLK+ADDMAGQ+FNDVGR+DEE  VR KDRQGKM
Sbjct: 389 RGSGGEGAVVVGLEESRPGALASTLKEADDMAGQTFNDVGRVDEEGAVRSKDRQGKM 445

[Close]
BLAST of Cmc04g0117291 vs. ExPASy Swiss-Prot
Match: P20075 (Embryonic protein DC-8 OS=Daucus carota OX=4039 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 3.6e-09
Identity = 31/52 (59.62%), Postives = 40/52 (76.92%), Query Frame = 0 

Query: 14  EVVVGLEETRPGALASTLKQADDMAGQSFNDVGRMDEEEVV--RIKDRQGKM 64
           E V+ ++ETRPGA+A  LK AD M GQ+FNDVG+M +EEV+  R + RQGKM
Sbjct: 504 EAVIKVDETRPGAVAEALKAADQMHGQAFNDVGKMGDEEVIVERKETRQGKM 555

[Close]
BLAST of Cmc04g0117291 vs. ExPASy Swiss-Prot
Match: Q9LF88 (Late embryogenesis abundant protein At3g53040 OS=Arabidopsis thaliana OX=3702 GN=At3g53040 PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 1.2e-07
Identity = 26/46 (56.52%), Postives = 36/46 (78.26%), Query Frame = 0 

Query: 11  GEGEVVVGLEETRPGALASTLKQADDMAGQSFNDVGRMDEEEVVRI 57
           G+  V V +++TRPG +A+ LK+AD M GQ+FNDVG +D+EE VRI
Sbjct: 427 GKTVVAVDVKDTRPGYVATVLKEADQMTGQTFNDVGEIDDEEKVRI 472

[Close]
BLAST of Cmc04g0117291 vs. ExPASy Swiss-Prot
Match: Q9SKP0 (Late embryogenesis abundant protein ECP63 OS=Arabidopsis thaliana OX=3702 GN=ECP63 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 2.9e-06
Identity = 25/48 (52.08%), Postives = 36/48 (75.00%), Query Frame = 0 

Query: 6   ARGRGGEGEVV--VGLEETRPGALASTLKQADDMAGQSFNDVGRMDEE 52
           AR  GG G  V  V +E+++PG +A++LK +D M GQ+FNDVGRMD++
Sbjct: 393 AREHGGTGRTVVEVKVEDSKPGKVATSLKASDQMTGQTFNDVGRMDDD 440

[Close]
BLAST of Cmc04g0117291 vs. ExPASy TrEMBL
Match: A0A5A7TQ42 (Embryonic protein DC-8 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G003310 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.2e-20
Identity = 55/57 (96.49%), Postives = 55/57 (96.49%), Query Frame = 0 

Query: 7   RGRGGEGEVVVGLEETRPGALASTLKQADDMAGQSFNDVGRMDEEEVVRIKDRQGKM 64
           RGRGGEGEVVVGLEETRPGALASTLKQADDMAGQSFNDVGRMDEE VVR KDRQGKM
Sbjct: 474 RGRGGEGEVVVGLEETRPGALASTLKQADDMAGQSFNDVGRMDEEGVVRSKDRQGKM 530

[Close]
BLAST of Cmc04g0117291 vs. ExPASy TrEMBL
Match: A0A1S3B611 (embryonic protein DC-8 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486554 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.2e-20
Identity = 55/57 (96.49%), Postives = 55/57 (96.49%), Query Frame = 0 

Query: 7   RGRGGEGEVVVGLEETRPGALASTLKQADDMAGQSFNDVGRMDEEEVVRIKDRQGKM 64
           RGRGGEGEVVVGLEETRPGALASTLKQADDMAGQSFNDVGRMDEE VVR KDRQGKM
Sbjct: 431 RGRGGEGEVVVGLEETRPGALASTLKQADDMAGQSFNDVGRMDEEGVVRSKDRQGKM 487

[Close]
BLAST of Cmc04g0117291 vs. ExPASy TrEMBL
Match: A0A1S3B797 (embryonic protein DC-8 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486554 PE=3 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.2e-20
Identity = 55/57 (96.49%), Postives = 55/57 (96.49%), Query Frame = 0 

Query: 7   RGRGGEGEVVVGLEETRPGALASTLKQADDMAGQSFNDVGRMDEEEVVRIKDRQGKM 64
           RGRGGEGEVVVGLEETRPGALASTLKQADDMAGQSFNDVGRMDEE VVR KDRQGKM
Sbjct: 434 RGRGGEGEVVVGLEETRPGALASTLKQADDMAGQSFNDVGRMDEEGVVRSKDRQGKM 490

[Close]
BLAST of Cmc04g0117291 vs. ExPASy TrEMBL
Match: A0A0A0LAP9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G748200 PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 9.3e-16
Identity = 48/58 (82.76%), Postives = 52/58 (89.66%), Query Frame = 0 

Query: 7   RGRGGEGEVVVGLEETRPGALASTLKQADDMAGQSFNDVGRMDEEE-VVRIKDRQGKM 64
           RGRGGEG VVV LEETRPGALASTLK+ADDMA Q+FNDVGR+D+EE  VR KDRQGKM
Sbjct: 494 RGRGGEGAVVVDLEETRPGALASTLKKADDMAAQTFNDVGRIDDEEGAVRSKDRQGKM 551

[Close]
BLAST of Cmc04g0117291 vs. ExPASy TrEMBL
Match: A0A6J1J0R8 (embryonic protein DC-8 OS=Cucurbita maxima OX=3661 GN=LOC111481635 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 3.9e-14
Identity = 46/58 (79.31%), Postives = 52/58 (89.66%), Query Frame = 0 

Query: 7   RGRGGEGE-VVVGLEETRPGALASTLKQADDMAGQSFNDVGRMDEEEVVRIKDRQGKM 64
           RG GG+G+ VVVG+EETRPG+LASTLKQADDMAGQ+FNDVGRMDE+   R KDRQGKM
Sbjct: 412 RGSGGKGDTVVVGMEETRPGSLASTLKQADDMAGQTFNDVGRMDED---RSKDRQGKM 466

[Close]
BLAST of Cmc04g0117291 vs. TAIR 10
Match: AT3G53040.1 (late embryogenesis abundant protein, putative / LEA protein, putative )

HSP 1 Score: 56.6 bits (135), Expect = 8.3e-09
Identity = 26/46 (56.52%), Postives = 36/46 (78.26%), Query Frame = 0 

Query: 11  GEGEVVVGLEETRPGALASTLKQADDMAGQSFNDVGRMDEEEVVRI 57
           G+  V V +++TRPG +A+ LK+AD M GQ+FNDVG +D+EE VRI
Sbjct: 427 GKTVVAVDVKDTRPGYVATVLKEADQMTGQTFNDVGEIDDEEKVRI 472

[Close]
BLAST of Cmc04g0117291 vs. TAIR 10
Match: AT2G36640.1 (embryonic cell protein 63 )

HSP 1 Score: 52.0 bits (123), Expect = 2.0e-07
Identity = 25/48 (52.08%), Postives = 36/48 (75.00%), Query Frame = 0 

Query: 6   ARGRGGEGEVV--VGLEETRPGALASTLKQADDMAGQSFNDVGRMDEE 52
           AR  GG G  V  V +E+++PG +A++LK +D M GQ+FNDVGRMD++
Sbjct: 393 AREHGGTGRTVVEVKVEDSKPGKVATSLKASDQMTGQTFNDVGRMDDD 440

The following BLAST results are available for this feature:
BLAST of Cmc04g0117291 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0043937.12.6e-2096.49embryonic protein DC-8 isoform X1 [Cucumis melo var. makuwa] >TYK25202.1 embryon... [more]
XP_008442777.12.6e-2096.49PREDICTED: embryonic protein DC-8 isoform X1 [Cucumis melo][more]
XP_008442778.12.6e-2096.49PREDICTED: embryonic protein DC-8 isoform X2 [Cucumis melo][more]
XP_038903631.17.8e-1784.21late embryogenesis abundant protein At3g53040-like isoform X1 [Benincasa hispida... [more]
XP_038903633.17.8e-1784.21late embryogenesis abundant protein At3g53040-like isoform X3 [Benincasa hispida... [more]
BLAST of Cmc04g0117291 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P200753.6e-0959.62Embryonic protein DC-8 OS=Daucus carota OX=4039 PE=3 SV=1[more]
Q9LF881.2e-0756.52Late embryogenesis abundant protein At3g53040 OS=Arabidopsis thaliana OX=3702 GN... [more]
Q9SKP02.9e-0652.08Late embryogenesis abundant protein ECP63 OS=Arabidopsis thaliana OX=3702 GN=ECP... [more]
BLAST of Cmc04g0117291 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TQ421.2e-2096.49Embryonic protein DC-8 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A1S3B6111.2e-2096.49embryonic protein DC-8 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486554 PE=3 S... [more]
A0A1S3B7971.2e-2096.49embryonic protein DC-8 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486554 PE=3 S... [more]
A0A0A0LAP99.3e-1682.76Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G748200 PE=3 SV=1[more]
A0A6J1J0R83.9e-1479.31embryonic protein DC-8 OS=Cucurbita maxima OX=3661 GN=LOC111481635 PE=3 SV=1[more]
BLAST of Cmc04g0117291 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G53040.18.3e-0956.52late embryogenesis abundant protein, putative / LEA protein, putative [more]
AT2G36640.12.0e-0752.08embryonic cell protein 63 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc04g0117291.1Cmc04g0117291.1mRNA