Cmc04g0116451 (gene) Melon (Charmono) v1.1

Overview
NameCmc04g0116451
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Descriptionreplication protein A 14 kDa subunit B
LocationCMiso1.1chr04: 34028229 .. 34031616 (+)
RNA-Seq ExpressionCmc04g0116451
SyntenyCmc04g0116451
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTAAAACTAGACTCATTACATAAGGTGTCGATTAATTTTTACTAATTCATATTCATTTTAACTTTTTTTTTTTTACATTAAGTTCTCTTTTCTCATAGTTTTTGTTTTACCCTTTTTATAATATTGAAAAAGAAAAATGTATATGAAAAATCTGAAAATGATACCGTTCGTTGATTGCTCGTGCGAGCACGTGTAGACCGTCGGATGAAGCAGACTATCTGTCTATAAATACCTATCTTCTCATTTCGTTTTTAGTCGAAGCTTCAATTTTGCCTCTTTCAAAAACCGCGCGCTTTTTCGATCGATTCGATTGCCATTTCCGGCGAACTCTCCGATCGCTGAATCAGGTATTGTAGTTCCTCAGTGCTCTTTTGATTCTTTGTTCGAGTGTTTTGCAATTATTCTCCCCCTTGTTTGGTTCAGTTTGTTAGATCGAAGTGCACGATGAAATTCTTTTTGACTCTTTTCTTGTATCGTCTTGTCAGGAATATGGATATGTTTGTTTGGCGTCAAATTAAGTCTAGTTGTTTTCTAGTTTGGTCGCATTTTCTTCCTGATTATGGTCTGGGTTCCTCATTTTGACATTTAAAGAAAGTAGAGAATTTAGACGCTGGAAGACAGTTGTGAGTGGAGAATTTTAACATTAGTGAAGCTAAAATAAGAGCTAACCCACAGTGATCATCATTCATACTCGTATTGTTATAATTAATTTTTCTTTCAAATGCAAAGAGCTTAGAGAGAATGGAACCACCTACTTAGGATTTAAATTTTAACAAGTTATCTTGACAATCAAATGCGTTAAAATCACATGTTTCTTTTGTTAGAACAGTTGAGTGCAACAAAGTGGGATGAACACTCTGTGAAAATTTCTCTGACTGATATCTTATAGACATTTTTTAAACATAGCAATTGGTTTTGAGTACAAATGTCAAAAGTAACTGTTTGGATCTCCACCACATTAGATTTTTGTAACGAGGAAGAAAATTACTTGTGAAATGCTGTCTGCTAGTTGCATAAATGCCACCATGAATTTTTTTTATTGATTTGGTGTTTAACCCAACAAATTTCAAGCATTGCTAACATGGTGGAACAAGTTTGTTTTGTTCTCACTAGATGTTCCTCTCTGAAATATTTTCTTCTTGTTCTTGCTGTTTACTATAGATGGATACATCAAACCCTTCAGTTTTTGTCAATGCTGAGCTTTTACGACTGTATGTTGGAAGAAGAGTTCGGGCTGTGATTCAGGTACTGTCTGAAGGCAATGGAGTCATACTTGGTAAATCAACGGATGACAACCAGATCACTGTCAAAGGTTCCCCGCCCTTTCCTCTTTCAAAGTTTGTCGAGGTGATTGGAATTGCTGATACTGACAAATCCATTCGAGCTGATGTGTGGACCAATTTTGGTGATTCATTTGGTATGCTCTCTTCTTCAATCATGCTTACGCTAAAATGACATTTGGTATTCTTACGCAAAAATGACGGTAGAAATAGTTGGCTTGGGTCATGCTGAAAGCCCAAGGAATTTATTTTCCCCTAATTTTATTCTTTTGATGAGGCTATTTTCCCCTAATTTTATTCTTTTAATGAGGCTTGTGGTGTCTATAAATACTTCCCCTTTGTACCTTTATAATTTCAGAAATAATAAGAAACATCTATACCATGGTTTTTCTCCCTGTACTAGGGTTTTCACATAGACCTCGTATTCTTTCTTTCTCTTTACTTTCAATAATGACACTTTGAAGCTCAGAAACTGTATAGTGCCAATATTTATGTTTGAATTAGCTGAAGAGGATCACTAATTGTGTTTTCAGCTGTATCAATGTTCTTGGCGAAAGCAATGTTGAGTTTTAAATAGATATTTTCTCAAAAAGCCTAGCTAAATCTGGCATGTGCAATTCTGAAGCGTAACTTGGCTAGATCATCAGTTTGGAACCGGGATCAAACTAGTTGAAACTAGTATTTGACATTCATTTTGTATCTAGTTGAAACTAGCATTTGACATTCATTTTGTATCTAGTTGAAACTAAATCCATTCTCTTTTTAAAACCTTCTGCTTACCTTGTATGAATGTGAAATTACCGAACTGGAACATTGTGCACTTGAGTTGGATCTATCACACTTCTCTTGGTCCTTAGGTTTTAGGTCTTCCCACTCTCCTGGCGCTCTCTATTTTCTCTTGCTCTTGTACTCACTCCTTTTTTTTATAATTAAAAGGGAGTGAATATAACAAGACTGCGAGAGTCAACATTAGGAATTGAAATTGAGGATGTATAGTTCCAAGAGCGAGAGTTGCCCAATACAAAAGCACAATAAGGTCATTTCAACAATTTTCTGACGACGATGCAAACAAAATGTCAAAAAACTTTTTATAAAGTGGAGCTGTTTCTAGTATTGACCCAAAATTTGGTTCAACCATACAATTATCAGCAGTCACCAAGTTCTATAAATGTAGAAATAAGAGAAAAAAACTATACCAAATGATGAACTTGGCGAGTGAAAAACCAGTTATATGTGGGTGTGAGTGCGTTTCATTTTGTGAGCCCTTGGGATAATTCTGTTAGTTGGGAAAGGGGCGTTGAATAGGCTGAGGTAGGGAGTCTTTCGTTATCTTTTGGCATATTTTTTTTGTAGATCTTTTCAGCATAAAGGAGAAGGGGGAGATTTCGAACTCCCTCCATATTTGCCAAAACAGGGAATCTATAATTCATATCTCTCAAATCCATCTTACTTAGCTCATTAAGACTTAAGAATTTGTTACCCCACGATGTTTTATATAATCTTCTCCTTGGATGAGGAGCCTGAAGATGAGATATGCCAATAATTCAAGCACGAGTTACTTATAGAATAATCACTCTTGGATTATTCTTTCAACATTCTATGAGATTAGATTAGTTATTGAACTTTTACCAACTATTATGAGAACAACTAGCATTCTGAATTCTTTGTTTAACGCTGTTTGCAGATACATCTACCTTCAATCAACTATGCCAGTTTGCTAATGGGGAGTTCAAACACTTGTTTATCTGATTTTCAAGCCAGACATTCTTTAGCAAGCTCCCGTGACACGCCAAGTCGCCAATGTTCTCTTCATGTTCTTCTGAAAGCATCCGAGATTTATCGTTCATACGGTATTGAACTTTTCAGGTAAGGGATGTATAAAATTTGAATATGCAAAGTATGTTTGTGTTAGAATATACTAGAATGAACATTGCTTCAAAATGATAAAAAGAATTATATTTTAATCAATTTCGTTTGTAGTTTTTTAGGTTAGTAAGCCTTTGTGAATGCAAATAAACTGAAAACCGATGATTACAAACTGACGAACTATAATCTTTAACTGAAGCTCAATGTTATGAAAAACATAATCTAGAGAATATATGCCAAC

mRNA sequence

GTTAAAACTAGACTCATTACATAAGGTGTCGATTAATTTTTACTAATTCATATTCATTTTAACTTTTTTTTTTTTACATTAAGTTCTCTTTTCTCATAGTTTTTGTTTTACCCTTTTTATAATATTGAAAAAGAAAAATGTATATGAAAAATCTGAAAATGATACCGTTCGTTGATTGCTCGTGCGAGCACGTGTAGACCGTCGGATGAAGCAGACTATCTGTCTATAAATACCTATCTTCTCATTTCGTTTTTAGTCGAAGCTTCAATTTTGCCTCTTTCAAAAACCGCGCGCTTTTTCGATCGATTCGATTGCCATTTCCGGCGAACTCTCCGATCGCTGAATCAGGAATATGGATATGTTTATGGATACATCAAACCCTTCAGTTTTTGTCAATGCTGAGCTTTTACGACTGTATGTTGGAAGAAGAGTTCGGGCTGTGATTCAGGTACTGTCTGAAGGCAATGGAGTCATACTTGGTAAATCAACGGATGACAACCAGATCACTGTCAAAGGTTCCCCGCCCTTTCCTCTTTCAAAGTTTGTCGAGGTGATTGGAATTGCTGATACTGACAAATCCATTCGAGCTGATGTGTGGACCAATTTTGGTGATTCATTTGATACATCTACCTTCAATCAACTATGCCAGTTTGCTAATGGGGAGTTCAAACACTTGTTTATCTGATTTTCAAGCCAGACATTCTTTAGCAAGCTCCCGTGACACGCCAAGTCGCCAATGTTCTCTTCATGTTCTTCTGAAAGCATCCGAGATTTATCGTTCATACGGTATTGAACTTTTCAGGTAAGGGATGTATAAAATTTGAATATGCAAAGTATGTTTGTGTTAGAATATACTAGAATGAACATTGCTTCAAAATGATAAAAAGAATTATATTTTAATCAATTTCGTTTGTAGTTTTTTAGGTTAGTAAGCCTTTGTGAATGCAAATAAACTGAAAACCGATGATTACAAACTGACGAACTATAATCTTTAACTGAAGCTCAATGTTATGAAAAACATAATCTAGAGAATATATGCCAAC

Coding sequence (CDS)

ATGGATATGTTTATGGATACATCAAACCCTTCAGTTTTTGTCAATGCTGAGCTTTTACGACTGTATGTTGGAAGAAGAGTTCGGGCTGTGATTCAGGTACTGTCTGAAGGCAATGGAGTCATACTTGGTAAATCAACGGATGACAACCAGATCACTGTCAAAGGTTCCCCGCCCTTTCCTCTTTCAAAGTTTGTCGAGGTGATTGGAATTGCTGATACTGACAAATCCATTCGAGCTGATGTGTGGACCAATTTTGGTGATTCATTTGATACATCTACCTTCAATCAACTATGCCAGTTTGCTAATGGGGAGTTCAAACACTTGTTTATCTGA

Protein sequence

MDMFMDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKFVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI
Homology
[Close]
BLAST of Cmc04g0116451 vs. NCBI nr
Match: XP_008442847.1 (PREDICTED: replication protein A 14 kDa subunit B [Cucumis melo])

HSP 1 Score: 215.3 bits (547), Expect = 2.6e-52
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 5   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 64
           MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF
Sbjct: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 60

Query: 65  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 111
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI
Sbjct: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 106

[Close]
BLAST of Cmc04g0116451 vs. NCBI nr
Match: XP_038905423.1 (replication protein A 14 kDa subunit B [Benincasa hispida])

HSP 1 Score: 211.5 bits (537), Expect = 3.8e-51
Identity = 104/106 (98.11%), Postives = 104/106 (98.11%), Query Frame = 0 

Query: 5   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 64
           MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVI GKSTDDNQITVKGSPPFPLSKF
Sbjct: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVIFGKSTDDNQITVKGSPPFPLSKF 60

Query: 65  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 111
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQ ANGEFKHLFI
Sbjct: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKHLFI 106

[Close]
BLAST of Cmc04g0116451 vs. NCBI nr
Match: XP_004149201.1 (replication protein A 14 kDa subunit B [Cucumis sativus] >KAE8651091.1 hypothetical protein Csa_001329 [Cucumis sativus])

HSP 1 Score: 204.5 bits (519), Expect = 4.6e-49
Identity = 101/106 (95.28%), Postives = 102/106 (96.23%), Query Frame = 0 

Query: 5   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 64
           MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSE NGV+ GKSTDDNQITVKGSPPFPLSKF
Sbjct: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKF 60

Query: 65  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 111
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLC FANGEFK LFI
Sbjct: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANGEFKPLFI 106

[Close]
BLAST of Cmc04g0116451 vs. NCBI nr
Match: XP_023528146.1 (replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 201.4 bits (511), Expect = 3.9e-48
Identity = 100/106 (94.34%), Postives = 101/106 (95.28%), Query Frame = 0 

Query: 5   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 64
           MDTSNPSVFVNAELLRLYVGRRVRAVIQV SEGNGVI GKSTDDNQITVKGSPPF LSKF
Sbjct: 54  MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDDNQITVKGSPPFTLSKF 113

Query: 65  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 111
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQ ANGEFK LF+
Sbjct: 114 VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 159

[Close]
BLAST of Cmc04g0116451 vs. NCBI nr
Match: XP_022983164.1 (replication protein A 14 kDa subunit B-like [Cucurbita maxima])

HSP 1 Score: 200.7 bits (509), Expect = 6.7e-48
Identity = 99/106 (93.40%), Postives = 101/106 (95.28%), Query Frame = 0 

Query: 5   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 64
           MDTSNPSVFVNAELLR+YVGRRVRAVIQV SEGNGVI GKSTDDNQITVKGSPPF LSKF
Sbjct: 1   MDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVIYGKSTDDNQITVKGSPPFSLSKF 60

Query: 65  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 111
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQ ANGEFK LF+
Sbjct: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 106

[Close]
BLAST of Cmc04g0116451 vs. ExPASy Swiss-Prot
Match: Q6NLG7 (Replication protein A 14 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA3B PE=1 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 6.1e-36
Identity = 69/106 (65.09%), Postives = 87/106 (82.08%), Query Frame = 0 

Query: 5   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 64
           MDTS+P+ FVN  LLR Y+G++VRAVIQV+    G ++GKSTDD QI VKGSP  PL+ +
Sbjct: 1   MDTSSPAAFVNGALLRRYIGQKVRAVIQVIRSDVGSVIGKSTDDQQIVVKGSPQPPLTTY 60

Query: 65  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 111
           +EVIGIA+TD +IRA+VWTNFGDSFD   +N+LC+ ANGEF+HLFI
Sbjct: 61  LEVIGIAETDNTIRAEVWTNFGDSFDVQNYNELCKLANGEFRHLFI 106

[Close]
BLAST of Cmc04g0116451 vs. ExPASy Swiss-Prot
Match: Q9LXK1 (Replication protein A 14 kDa subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA3A PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 4.8e-33
Identity = 66/107 (61.68%), Postives = 86/107 (80.37%), Query Frame = 0 

Query: 5   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKG-SPPFPLSK 64
           MDTS+PS FVN  LLR ++G++VR VIQV     G ++GKSTDD QI V+G SPP PL+ 
Sbjct: 1   MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 65  FVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 111
           ++EVIGIA++D +IRA+ WTNFG++FDT  +N+LC+ ANGEFKHLFI
Sbjct: 61  YLEVIGIAESDNAIRAETWTNFGNTFDTQNYNELCKLANGEFKHLFI 107

[Close]
BLAST of Cmc04g0116451 vs. ExPASy Swiss-Prot
Match: Q9SDK9 (Replication protein A 14 kDa subunit OS=Oryza sativa subsp. japonica OX=39947 GN=RPA3 PE=1 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 2.1e-28
Identity = 55/106 (51.89%), Postives = 84/106 (79.25%), Query Frame = 0 

Query: 5   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 64
           MDTS P+ FVN E+L+++VGRRVR V+Q   E  G+++G+STD +Q+T+KG+   P+S +
Sbjct: 1   MDTSGPAAFVNGEILKMFVGRRVRTVVQAQREEGGLLIGQSTDGHQLTIKGASGAPMSHY 60

Query: 65  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 111
           VE+IGIA+ +++IRA+V T+FG++FD + FN LC+ ANG+ K LF+
Sbjct: 61  VEIIGIAEPNQAIRAEVCTDFGENFDPAPFNGLCKLANGQMKDLFL 106

[Close]
BLAST of Cmc04g0116451 vs. ExPASy TrEMBL
Match: A0A1S3B7E2 (replication protein A 14 kDa subunit B OS=Cucumis melo OX=3656 GN=LOC103486618 PE=3 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.3e-52
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 0 

Query: 5   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 64
           MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF
Sbjct: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 60

Query: 65  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 111
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI
Sbjct: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 106

[Close]
BLAST of Cmc04g0116451 vs. ExPASy TrEMBL
Match: A0A0A0LGP0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G777000 PE=3 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 2.2e-49
Identity = 101/106 (95.28%), Postives = 102/106 (96.23%), Query Frame = 0 

Query: 5   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 64
           MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSE NGV+ GKSTDDNQITVKGSPPFPLSKF
Sbjct: 40  MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSESNGVVFGKSTDDNQITVKGSPPFPLSKF 99

Query: 65  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 111
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLC FANGEFK LFI
Sbjct: 100 VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCLFANGEFKPLFI 145

[Close]
BLAST of Cmc04g0116451 vs. ExPASy TrEMBL
Match: A0A6J1J6J3 (replication protein A 14 kDa subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC111481797 PE=3 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 3.2e-48
Identity = 99/106 (93.40%), Postives = 101/106 (95.28%), Query Frame = 0 

Query: 5   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 64
           MDTSNPSVFVNAELLR+YVGRRVRAVIQV SEGNGVI GKSTDDNQITVKGSPPF LSKF
Sbjct: 1   MDTSNPSVFVNAELLRMYVGRRVRAVIQVQSEGNGVIYGKSTDDNQITVKGSPPFSLSKF 60

Query: 65  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 111
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQ ANGEFK LF+
Sbjct: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQLANGEFKPLFV 106

[Close]
BLAST of Cmc04g0116451 vs. ExPASy TrEMBL
Match: A0A6J1L034 (replication protein A 14 kDa subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC111498639 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 7.2e-48
Identity = 99/106 (93.40%), Postives = 101/106 (95.28%), Query Frame = 0 

Query: 5   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 64
           MDTSNPSVFVNAELLRLYVGRRVRAVIQV SEGNGVI GKSTD+NQI VKGSPPFPLSKF
Sbjct: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKF 60

Query: 65  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 111
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFN+LCQ ANGEFK LFI
Sbjct: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGEFKPLFI 106

[Close]
BLAST of Cmc04g0116451 vs. ExPASy TrEMBL
Match: A0A6J1FQS1 (replication protein A 14 kDa subunit B-like OS=Cucurbita moschata OX=3662 GN=LOC111447925 PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 7.2e-48
Identity = 99/106 (93.40%), Postives = 101/106 (95.28%), Query Frame = 0 

Query: 5   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 64
           MDTSNPSVFVNAELLRLYVGRRVRAVIQV SEGNGVI GKSTD+NQI VKGSPPFPLSKF
Sbjct: 1   MDTSNPSVFVNAELLRLYVGRRVRAVIQVQSEGNGVIYGKSTDNNQIVVKGSPPFPLSKF 60

Query: 65  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 111
           VEVIGIADTDKSIRADVWTNFGDSFDTSTFN+LCQ ANGEFK LFI
Sbjct: 61  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNKLCQLANGEFKPLFI 106

[Close]
BLAST of Cmc04g0116451 vs. TAIR 10
Match: AT4G18590.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 151.4 bits (381), Expect = 4.3e-37
Identity = 69/106 (65.09%), Postives = 87/106 (82.08%), Query Frame = 0 

Query: 5   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKGSPPFPLSKF 64
           MDTS+P+ FVN  LLR Y+G++VRAVIQV+    G ++GKSTDD QI VKGSP  PL+ +
Sbjct: 1   MDTSSPAAFVNGALLRRYIGQKVRAVIQVIRSDVGSVIGKSTDDQQIVVKGSPQPPLTTY 60

Query: 65  VEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 111
           +EVIGIA+TD +IRA+VWTNFGDSFD   +N+LC+ ANGEF+HLFI
Sbjct: 61  LEVIGIAETDNTIRAEVWTNFGDSFDVQNYNELCKLANGEFRHLFI 106

[Close]
BLAST of Cmc04g0116451 vs. TAIR 10
Match: AT3G52630.1 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 141.7 bits (356), Expect = 3.4e-34
Identity = 66/107 (61.68%), Postives = 86/107 (80.37%), Query Frame = 0 

Query: 5   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKG-SPPFPLSK 64
           MDTS+PS FVN  LLR ++G++VR VIQV     G ++GKSTDD QI V+G SPP PL+ 
Sbjct: 1   MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 65  FVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 111
           ++EVIGIA++D +IRA+ WTNFG++FDT  +N+LC+ ANGEFKHLFI
Sbjct: 61  YLEVIGIAESDNAIRAETWTNFGNTFDTQNYNELCKLANGEFKHLFI 107

[Close]
BLAST of Cmc04g0116451 vs. TAIR 10
Match: AT3G52630.2 (Nucleic acid-binding, OB-fold-like protein )

HSP 1 Score: 141.7 bits (356), Expect = 3.4e-34
Identity = 66/107 (61.68%), Postives = 86/107 (80.37%), Query Frame = 0 

Query: 5   MDTSNPSVFVNAELLRLYVGRRVRAVIQVLSEGNGVILGKSTDDNQITVKG-SPPFPLSK 64
           MDTS+PS FVN  LLR ++G++VR VIQV     G ++GKSTDD QI V+G SPP PL+ 
Sbjct: 1   MDTSSPSAFVNGALLRRFIGQKVRTVIQVTGSEIGSVVGKSTDDLQIVVRGSSPPSPLTT 60

Query: 65  FVEVIGIADTDKSIRADVWTNFGDSFDTSTFNQLCQFANGEFKHLFI 111
           ++EVIGIA++D +IRA+ WTNFG++FDT  +N+LC+ ANGEFKHLFI
Sbjct: 61  YLEVIGIAESDNAIRAETWTNFGNTFDTQNYNELCKLANGEFKHLFI 107

The following BLAST results are available for this feature:
BLAST of Cmc04g0116451 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008442847.12.6e-52100.00PREDICTED: replication protein A 14 kDa subunit B [Cucumis melo][more]
XP_038905423.13.8e-5198.11replication protein A 14 kDa subunit B [Benincasa hispida][more]
XP_004149201.14.6e-4995.28replication protein A 14 kDa subunit B [Cucumis sativus] >KAE8651091.1 hypotheti... [more]
XP_023528146.13.9e-4894.34replication protein A 14 kDa subunit B-like [Cucurbita pepo subsp. pepo][more]
XP_022983164.16.7e-4893.40replication protein A 14 kDa subunit B-like [Cucurbita maxima][more]
BLAST of Cmc04g0116451 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6NLG76.1e-3665.09Replication protein A 14 kDa subunit B OS=Arabidopsis thaliana OX=3702 GN=RPA3B ... [more]
Q9LXK14.8e-3361.68Replication protein A 14 kDa subunit A OS=Arabidopsis thaliana OX=3702 GN=RPA3A ... [more]
Q9SDK92.1e-2851.89Replication protein A 14 kDa subunit OS=Oryza sativa subsp. japonica OX=39947 GN... [more]
BLAST of Cmc04g0116451 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3B7E21.3e-52100.00replication protein A 14 kDa subunit B OS=Cucumis melo OX=3656 GN=LOC103486618 P... [more]
A0A0A0LGP02.2e-4995.28Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G777000 PE=3 SV=1[more]
A0A6J1J6J33.2e-4893.40replication protein A 14 kDa subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A6J1L0347.2e-4893.40replication protein A 14 kDa subunit B-like OS=Cucurbita maxima OX=3661 GN=LOC11... [more]
A0A6J1FQS17.2e-4893.40replication protein A 14 kDa subunit B-like OS=Cucurbita moschata OX=3662 GN=LOC... [more]
BLAST of Cmc04g0116451 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G18590.14.3e-3765.09Nucleic acid-binding, OB-fold-like protein [more]
AT3G52630.13.4e-3461.68Nucleic acid-binding, OB-fold-like protein [more]
AT3G52630.23.4e-3461.68Nucleic acid-binding, OB-fold-like protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D2.40.50.140coord: 5..110
e-value: 3.2E-21
score: 77.4
NoneNo IPR availablePANTHERPTHR47058REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATEDcoord: 3..110
NoneNo IPR availableCDDcd04479RPA3coord: 10..102
e-value: 2.50003E-24
score: 86.9333
IPR013970Replication factor A protein 3PFAMPF08661Rep_fac-A_3coord: 5..106
e-value: 4.0E-21
score: 75.3
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 9..109

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc04g0116451.1Cmc04g0116451.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006310 DNA recombination
biological_process GO:0006281 DNA repair
biological_process GO:0006260 DNA replication
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
cellular_component GO:0031981 nuclear lumen
cellular_component GO:0005634 nucleus
molecular_function GO:0140359 ABC-type transporter activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0003677 DNA binding