Cmc04g0110211 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0110211
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3-gypsy retrotransposon protein
Location	CMiso1.1chr04: 29493089 .. 29493739 (+)
RNA-Seq Expression	Cmc04g0110211
Synteny	Cmc04g0110211

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGCATGGACCGATTTTGATCAGGGTTACTTGGTTGAGTGTAGAGCACTAGAAGGAGGAGTAATGTTGACGGAAGAAAGTGCCGAAACGGAAACTAATGTGGTGCCTACTAACATGCAGAACGTAGTGGGAAAATTCAACGATGTCTTTGAATGGTCAGAATTATTGCCCCCAAGGAGATCAATTGAGCATCAGATTCATTTGAAAACAGGAACAAATCTAGTGAACGTCAGGCCACATAGATATGCTTTTCATCAAAAGGCAGAGATGGAGAAGCTGGTTGATGAGATGTTGTCATCTGGCATCATACAGCCGAGTTCTAGCCCTTATTCCAGCCTAGTACTACTTGTCAAGAAAAAAAATGGAAGCTGGAGATTTTGTGTGGATTACCATGCACTCAATAACGTTACCATACCAGATAAGTTTCCTATTCCAATTATAGAGGAGTTGTTTGATGAATTGAATGGTGCAAATCTGTTTTCTAAAATTGATTTAAAGGCTGGATACCATCAAATTAGAATGCATAAGGAGGATGTAGAAAAAACTGCATTTAGGACACATGAGGGGCATTATGAATTTTTAGTGATGTCTTTCGGTTTAACAAATGCACCAGCCACATTCGAGTCACTTATGAACTCTATTTTTTGA

mRNA sequence

ATGAAAGCATGGACCGATTTTGATCAGGGTTACTTGGTTGAGTGTAGAGCACTAGAAGGAGGAGTAATGTTGACGGAAGAAAGTGCCGAAACGGAAACTAATGTGGTGCCTACTAACATGCAGAACGTAGTGGGAAAATTCAACGATGTCTTTGAATGGTCAGAATTATTGCCCCCAAGGAGATCAATTGAGCATCAGATTCATTTGAAAACAGGAACAAATCTAGTGAACGTCAGGCCACATAGATATGCTTTTCATCAAAAGGCAGAGATGGAGAAGCTGGTTGATGAGATGTTGTCATCTGGCATCATACAGCCGAGTTCTAGCCCTTATTCCAGCCTAGTACTACTTGTCAAGAAAAAAAATGGAAGCTGGAGATTTTGTGTGGATTACCATGCACTCAATAACGTTACCATACCAGATAAGTTTCCTATTCCAATTATAGAGGAGTTGTTTGATGAATTGAATGGTGCAAATCTGTTTTCTAAAATTGATTTAAAGGCTGGATACCATCAAATTAGAATGCATAAGGAGGATGTAGAAAAAACTGCATTTAGGACACATGAGGGGCATTATGAATTTTTAGTGATGTCTTTCGGTTTAACAAATGCACCAGCCACATTCGAGTCACTTATGAACTCTATTTTTTGA

Coding sequence (CDS)

ATGAAAGCATGGACCGATTTTGATCAGGGTTACTTGGTTGAGTGTAGAGCACTAGAAGGAGGAGTAATGTTGACGGAAGAAAGTGCCGAAACGGAAACTAATGTGGTGCCTACTAACATGCAGAACGTAGTGGGAAAATTCAACGATGTCTTTGAATGGTCAGAATTATTGCCCCCAAGGAGATCAATTGAGCATCAGATTCATTTGAAAACAGGAACAAATCTAGTGAACGTCAGGCCACATAGATATGCTTTTCATCAAAAGGCAGAGATGGAGAAGCTGGTTGATGAGATGTTGTCATCTGGCATCATACAGCCGAGTTCTAGCCCTTATTCCAGCCTAGTACTACTTGTCAAGAAAAAAAATGGAAGCTGGAGATTTTGTGTGGATTACCATGCACTCAATAACGTTACCATACCAGATAAGTTTCCTATTCCAATTATAGAGGAGTTGTTTGATGAATTGAATGGTGCAAATCTGTTTTCTAAAATTGATTTAAAGGCTGGATACCATCAAATTAGAATGCATAAGGAGGATGTAGAAAAAACTGCATTTAGGACACATGAGGGGCATTATGAATTTTTAGTGATGTCTTTCGGTTTAACAAATGCACCAGCCACATTCGAGTCACTTATGAACTCTATTTTTTGA

Protein sequence

MKAWTDFDQGYLVECRALEGGVMLTEESAETETNVVPTNMQNVVGKFNDVFEWSELLPPRRSIEHQIHLKTGTNLVNVRPHRYAFHQKAEMEKLVDEMLSSGIIQPSSSPYSSLVLLVKKKNGSWRFCVDYHALNNVTIPDKFPIPIIEELFDELNGANLFSKIDLKAGYHQIRMHKEDVEKTAFRTHEGHYEFLVMSFGLTNAPATFESLMNSIF

Homology

[Close]

BLAST of Cmc04g0110211 vs. NCBI nr
Match: KAA0057242.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 373.6 bits (958), Expect = 1.1e-99
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1    MKAWTDFDQGYLVECRALEGGVMLTEESAETETNVVPTNMQNVVGKFNDVFEWSELLPPR 60
            MKAWTDFDQGYLVECRALEGGVMLTEESAETETNVVPTNMQNVVGKFNDVFEWSELLPPR
Sbjct: 960  MKAWTDFDQGYLVECRALEGGVMLTEESAETETNVVPTNMQNVVGKFNDVFEWSELLPPR 1019

Query: 61   RSIEHQIHLKTGTNLVNVRPHRYAFHQKAEMEKLVDEMLSSGIIQPSSSPYSSLVLLVKK 120
            RSIEHQIHLKTGTNLVNVRPHRYAFHQKAEMEKLVDEMLSSGIIQPSSSPYSSLVLLVKK
Sbjct: 1020 RSIEHQIHLKTGTNLVNVRPHRYAFHQKAEMEKLVDEMLSSGIIQPSSSPYSSLVLLVKK 1079

Query: 121  KNGSWRFCVDYHALNNVTIPDKFPIPIIEELFDELNGANLFSKIDLKAGYHQIRMHKED 180
            KNGSWRFCVDYHALNNVTIPDKFPIPIIEELFDELNGANLFSKIDLKAGYHQIRMHKED
Sbjct: 1080 KNGSWRFCVDYHALNNVTIPDKFPIPIIEELFDELNGANLFSKIDLKAGYHQIRMHKED 1138

[Close]

BLAST of Cmc04g0110211 vs. NCBI nr
Match: TYK18719.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 373.6 bits (958), Expect = 1.1e-99
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1    MKAWTDFDQGYLVECRALEGGVMLTEESAETETNVVPTNMQNVVGKFNDVFEWSELLPPR 60
            MKAWTDFDQGYLVECRALEGGVMLTEESAETETNVVPTNMQNVVGKFNDVFEWSELLPPR
Sbjct: 993  MKAWTDFDQGYLVECRALEGGVMLTEESAETETNVVPTNMQNVVGKFNDVFEWSELLPPR 1052

Query: 61   RSIEHQIHLKTGTNLVNVRPHRYAFHQKAEMEKLVDEMLSSGIIQPSSSPYSSLVLLVKK 120
            RSIEHQIHLKTGTNLVNVRPHRYAFHQKAEMEKLVDEMLSSGIIQPSSSPYSSLVLLVKK
Sbjct: 1053 RSIEHQIHLKTGTNLVNVRPHRYAFHQKAEMEKLVDEMLSSGIIQPSSSPYSSLVLLVKK 1112

Query: 121  KNGSWRFCVDYHALNNVTIPDKFPIPIIEELFDELNGANLFSKIDLKAGYHQIRMHKED 180
            KNGSWRFCVDYHALNNVTIPDKFPIPIIEELFDELNGANLFSKIDLKAGYHQIRMHKED
Sbjct: 1113 KNGSWRFCVDYHALNNVTIPDKFPIPIIEELFDELNGANLFSKIDLKAGYHQIRMHKED 1171

[Close]

BLAST of Cmc04g0110211 vs. NCBI nr
Match: KAA0037155.1 (peroxidase 64 [Cucumis melo var. makuwa] >TYK13918.1 peroxidase 64 [Cucumis melo var. makuwa])

HSP 1 Score: 352.8 bits (904), Expect = 2.1e-93
Identity = 165/207 (79.71%), Postives = 184/207 (88.89%), Query Frame = 0


Query: 10  GYLVECRALEGGVMLTEESAETETNVVPTNMQNVVGKFNDVFEWSELLPPRRSIEHQIHL 69
           GYLVECRALE GV+L EE+   E N  P  +Q ++ K+NDVFEWSE LPPRR+IEH IHL
Sbjct: 101 GYLVECRALEAGVLLLEETTVEENNNAPEEVQKILAKYNDVFEWSETLPPRRAIEHHIHL 160

Query: 70  KTGTNLVNVRPHRYAFHQKAEMEKLVDEMLSSGIIQPSSSPYSSLVLLVKKKNGSWRFCV 129
           KTGT  VNVRP+ YAF QKAEMEKLVDEM+SSGIIQP +SPYSSLVLLVKK +GSWRFC+
Sbjct: 161 KTGTEPVNVRPYWYAFQQKAEMEKLVDEMMSSGIIQPDNSPYSSLVLLVKKTDGSWRFCM 220

Query: 130 DYHALNNVTIPDKFPIPIIEELFDELNGANLFSKIDLKAGYHQIRMHKEDVEKTAFRTHE 189
           +Y ALNN T+PDKFPIP+IEELFDELNGANLFSKIDLKAGYHQIRMHKED+EKTAFRTHE
Sbjct: 221 NYRALNNATVPDKFPIPVIEELFDELNGANLFSKIDLKAGYHQIRMHKEDIEKTAFRTHE 280

Query: 190 GHYEFLVMSFGLTNAPATFESLMNSIF 217
           GHYEFLVM FGLTNAPATF+SL+NS+F
Sbjct: 281 GHYEFLVMPFGLTNAPATFQSLVNSVF 307

[Close]

BLAST of Cmc04g0110211 vs. NCBI nr
Match: KAA0061363.1 (peroxidase 64 [Cucumis melo var. makuwa] >TYK14718.1 peroxidase 64 [Cucumis melo var. makuwa])

HSP 1 Score: 348.6 bits (893), Expect = 3.9e-92
Identity = 170/216 (78.70%), Postives = 187/216 (86.57%), Query Frame = 0


Query: 1   MKAWTDFDQGYLVECRALEGGVMLTEESAETETNVVPTNMQNVVGKFNDVFEWSELLPPR 60
           MKAWTD DQGYLVECRAL+GGV+L+EE  E E N+VP ++Q ++ KFNDVFEW E LPPR
Sbjct: 215 MKAWTDSDQGYLVECRALQGGVILSEEVMEEEVNMVPADVQTMLDKFNDVFEWPETLPPR 274

Query: 61  RSIEHQIHLKTGTNLVNVRPHRYAFHQKAEMEKLVDEMLSSGIIQPSSSPYSSLVLLVKK 120
           R+IEHQIH+K GT  VNVRP+RYAFHQKAEME+LVDEMLSSGIIQPS+SPYSS VLLVKK
Sbjct: 275 RAIEHQIHMKLGTVPVNVRPYRYAFHQKAEMERLVDEMLSSGIIQPSNSPYSSPVLLVKK 334

Query: 121 KNGSWRFCVDYHALNNVTIPDKFPIPIIEELFDELNGANLFSKIDLKAGYHQIRMHKEDV 180
           K+GS   C DY A NN TI  KFPI +IEELFDELNGANLFSKIDLK GYHQIR HKED 
Sbjct: 335 KDGS---CADYRAFNNETIQYKFPILVIEELFDELNGANLFSKIDLKVGYHQIRRHKEDT 394

Query: 181 EKTAFRTHEGHYEFLVMSFGLTNAPATFESLMNSIF 217
           EKTAFRTHEGHYEFL+M FGL NAPATF+SLMNSIF
Sbjct: 395 EKTAFRTHEGHYEFLMMPFGLRNAPATFQSLMNSIF 427

[Close]

BLAST of Cmc04g0110211 vs. NCBI nr
Match: TYK21518.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 333.2 bits (853), Expect = 1.7e-87
Identity = 162/219 (73.97%), Postives = 184/219 (84.02%), Query Frame = 0


Query: 1   MKAWTDFDQGYLVECRALEGGVMLT---EESAETETNVVPTNMQNVVGKFNDVFEWSELL 60
           +K W + D GYL+ECR +E   + T   EE  ETE  ++P     ++ +F+DVFEW E L
Sbjct: 372 VKTWEEHDHGYLIECRPIEVVELKTFHKEEKEETEEKLIP-----ILNQFSDVFEWLEKL 431

Query: 61  PPRRSIEHQIHLKTGTNLVNVRPHRYAFHQKAEMEKLVDEMLSSGIIQPSSSPYSSLVLL 120
           PPRRSIEHQIHLK GTN VNVRP+RYA+HQK EMEKLV+EML SGII+PS+SPYSS VLL
Sbjct: 432 PPRRSIEHQIHLKEGTNPVNVRPYRYAYHQKEEMEKLVNEMLVSGIIRPSASPYSSPVLL 491

Query: 121 VKKKNGSWRFCVDYHALNNVTIPDKFPIPIIEELFDELNGANLFSKIDLKAGYHQIRMHK 180
           VKKK+GSWRFCVDY ALNNVTIPDKFPIPI+EELFDEL GA+LFSKIDLKAGYHQIRM  
Sbjct: 492 VKKKDGSWRFCVDYRALNNVTIPDKFPIPIVEELFDELGGASLFSKIDLKAGYHQIRMVD 551

Query: 181 EDVEKTAFRTHEGHYEFLVMSFGLTNAPATFESLMNSIF 217
            D+EKTAF+THEGHYEFLVM FGLTNAPATF+SLMNSIF
Sbjct: 552 RDIEKTAFQTHEGHYEFLVMPFGLTNAPATFQSLMNSIF 585

[Close]

BLAST of Cmc04g0110211 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 146.7 bits (369), Expect = 2.9e-34
Identity = 73/166 (43.98%), Postives = 100/166 (60.24%), Query Frame = 0


Query: 57  LPPRRS------IEHQIHLKTGTNLVNVRPHRYAFHQKAEMEKLVDEMLSSGIIQPSSSP 116
           LPPR +      ++H I +K G  L  ++P+      + E+ K+V ++L +  I PS SP
Sbjct: 572 LPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSP 631

Query: 117 YSSLVLLVKKKNGSWRFCVDYHALNNVTIPDKFPIPIIEELFDELNGANLFSKIDLKAGY 176
            SS V+LV KK+G++R CVDY  LN  TI D FP+P I+ L   +  A +F+ +DL +GY
Sbjct: 632 CSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGY 691

Query: 177 HQIRMHKEDVEKTAFRTHEGHYEFLVMSFGLTNAPATFESLMNSIF 217
           HQI M  +D  KTAF T  G YE+ VM FGL NAP+TF   M   F
Sbjct: 692 HQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTF 737

[Close]

BLAST of Cmc04g0110211 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 146.7 bits (369), Expect = 2.9e-34
Identity = 73/166 (43.98%), Postives = 100/166 (60.24%), Query Frame = 0


Query: 57  LPPRRS------IEHQIHLKTGTNLVNVRPHRYAFHQKAEMEKLVDEMLSSGIIQPSSSP 116
           LPPR +      ++H I +K G  L  ++P+      + E+ K+V ++L +  I PS SP
Sbjct: 598 LPPRPADINNIPVKHDIEIKPGARLPRLQPYHVTEKNEQEINKIVQKLLDNKFIVPSKSP 657

Query: 117 YSSLVLLVKKKNGSWRFCVDYHALNNVTIPDKFPIPIIEELFDELNGANLFSKIDLKAGY 176
            SS V+LV KK+G++R CVDY  LN  TI D FP+P I+ L   +  A +F+ +DL +GY
Sbjct: 658 CSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGY 717

Query: 177 HQIRMHKEDVEKTAFRTHEGHYEFLVMSFGLTNAPATFESLMNSIF 217
           HQI M  +D  KTAF T  G YE+ VM FGL NAP+TF   M   F
Sbjct: 718 HQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTFARYMADTF 763

[Close]

BLAST of Cmc04g0110211 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 5.2e-31
Identity = 74/186 (39.78%), Postives = 111/186 (59.68%), Query Frame = 0


Query: 40  MQNVVGKFNDVFEWSELLPP--RRSIEHQIHLKTGTNL---VNVRPHRYAFHQKAEMEKL 99
           + +++G+F  +FE     PP    S+E  +  +  TN    +  + + Y  + + E+E+ 
Sbjct: 88  LNSLLGEFPRIFE-----PPLSGMSVETAVKAEIRTNTQDPIYAKSYPYPVNMRGEVERQ 147

Query: 100 VDEMLSSGIIQPSSSPYSSLVLLVKKK---NG--SWRFCVDYHALNNVTIPDKFPIPIIE 159
           +DE+L  GII+PS+SPY+S + +V KK   NG   +R  VD+  LN VTIPD +PIP I 
Sbjct: 148 IDELLQDGIIRPSNSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNTVTIPDTYPIPDIN 207

Query: 160 ELFDELNGANLFSKIDLKAGYHQIRMHKEDVEKTAFRTHEGHYEFLVMSFGLTNAPATFE 216
                L  A  F+ +DL +G+HQI M + D+ KTAF T  G YEFL + FGL NAPA F+
Sbjct: 208 ATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYEFLRLPFGLKNAPAIFQ 267

[Close]

BLAST of Cmc04g0110211 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 8.9e-31
Identity = 71/182 (39.01%), Postives = 111/182 (60.99%), Query Frame = 0


Query: 40  MQNVVGKFNDV-FEWSELLPPRRSIEHQIHLKTGTNLVNVRPHRYAFHQKAEMEKLVDEM 99
           ++ ++ KF ++ ++  E L    +I+H ++  T  + +  + +  A   + E+E  V EM
Sbjct: 171 LKGLLNKFRNLEYKEGEKLTFTNTIKHVLN-TTHNSPIYSKQYPLAQTHEIEVENQVQEM 230

Query: 100 LSSGIIQPSSSPYSSLVLLVKKK-----NGSWRFCVDYHALNNVTIPDKFPIPIIEELFD 159
           L+ G+I+ S+SPY+S   +V KK        +R  +DY  LN +TIPD++PIP ++E+  
Sbjct: 231 LNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYPIPNMDEILG 290

Query: 160 ELNGANLFSKIDLKAGYHQIRMHKEDVEKTAFRTHEGHYEFLVMSFGLTNAPATFESLMN 216
           +L     F+ IDL  G+HQI M +E + KTAF T  GHYE+L M FGL NAPATF+  MN
Sbjct: 291 KLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNAPATFQRCMN 350

[Close]

BLAST of Cmc04g0110211 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.6e-30
Identity = 71/176 (40.34%), Postives = 104/176 (59.09%), Query Frame = 0


Query: 46  KFNDV-FEWSELLPPRRSIEHQIHLKTGTNLVNVRPHRYAFHQKAEMEKLVDEMLSSGII 105
           K++D+ +   + L      +H I+ K    L +   +  A+ Q  E+E  + +ML+ GII
Sbjct: 179 KYHDIQYHEGDKLTFTNQTKHTINTKHNLPLYSKYSYPQAYEQ--EVESQIQDMLNQGII 238

Query: 106 QPSSSPYSSLVLLVKKKNGS-----WRFCVDYHALNNVTIPDKFPIPIIEELFDELNGAN 165
           + S+SPY+S + +V KK  +     +R  +DY  LN +T+ D+ PIP ++E+  +L   N
Sbjct: 239 RTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRHPIPNMDEILGKLGRCN 298

Query: 166 LFSKIDLKAGYHQIRMHKEDVEKTAFRTHEGHYEFLVMSFGLTNAPATFESLMNSI 216
            F+ IDL  G+HQI M  E V KTAF T  GHYE+L M FGL NAPATF+  MN I
Sbjct: 299 YFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDI 352

[Close]

BLAST of Cmc04g0110211 vs. ExPASy TrEMBL
Match: A0A5A7UN06 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G00770 PE=4 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 5.5e-100
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1    MKAWTDFDQGYLVECRALEGGVMLTEESAETETNVVPTNMQNVVGKFNDVFEWSELLPPR 60
            MKAWTDFDQGYLVECRALEGGVMLTEESAETETNVVPTNMQNVVGKFNDVFEWSELLPPR
Sbjct: 960  MKAWTDFDQGYLVECRALEGGVMLTEESAETETNVVPTNMQNVVGKFNDVFEWSELLPPR 1019

Query: 61   RSIEHQIHLKTGTNLVNVRPHRYAFHQKAEMEKLVDEMLSSGIIQPSSSPYSSLVLLVKK 120
            RSIEHQIHLKTGTNLVNVRPHRYAFHQKAEMEKLVDEMLSSGIIQPSSSPYSSLVLLVKK
Sbjct: 1020 RSIEHQIHLKTGTNLVNVRPHRYAFHQKAEMEKLVDEMLSSGIIQPSSSPYSSLVLLVKK 1079

Query: 121  KNGSWRFCVDYHALNNVTIPDKFPIPIIEELFDELNGANLFSKIDLKAGYHQIRMHKED 180
            KNGSWRFCVDYHALNNVTIPDKFPIPIIEELFDELNGANLFSKIDLKAGYHQIRMHKED
Sbjct: 1080 KNGSWRFCVDYHALNNVTIPDKFPIPIIEELFDELNGANLFSKIDLKAGYHQIRMHKED 1138

[Close]

BLAST of Cmc04g0110211 vs. ExPASy TrEMBL
Match: A0A5D3D593 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold257G00200 PE=4 SV=1)

HSP 1 Score: 373.6 bits (958), Expect = 5.5e-100
Identity = 179/179 (100.00%), Postives = 179/179 (100.00%), Query Frame = 0


Query: 1    MKAWTDFDQGYLVECRALEGGVMLTEESAETETNVVPTNMQNVVGKFNDVFEWSELLPPR 60
            MKAWTDFDQGYLVECRALEGGVMLTEESAETETNVVPTNMQNVVGKFNDVFEWSELLPPR
Sbjct: 993  MKAWTDFDQGYLVECRALEGGVMLTEESAETETNVVPTNMQNVVGKFNDVFEWSELLPPR 1052

Query: 61   RSIEHQIHLKTGTNLVNVRPHRYAFHQKAEMEKLVDEMLSSGIIQPSSSPYSSLVLLVKK 120
            RSIEHQIHLKTGTNLVNVRPHRYAFHQKAEMEKLVDEMLSSGIIQPSSSPYSSLVLLVKK
Sbjct: 1053 RSIEHQIHLKTGTNLVNVRPHRYAFHQKAEMEKLVDEMLSSGIIQPSSSPYSSLVLLVKK 1112

Query: 121  KNGSWRFCVDYHALNNVTIPDKFPIPIIEELFDELNGANLFSKIDLKAGYHQIRMHKED 180
            KNGSWRFCVDYHALNNVTIPDKFPIPIIEELFDELNGANLFSKIDLKAGYHQIRMHKED
Sbjct: 1113 KNGSWRFCVDYHALNNVTIPDKFPIPIIEELFDELNGANLFSKIDLKAGYHQIRMHKED 1171

[Close]

BLAST of Cmc04g0110211 vs. ExPASy TrEMBL
Match: A0A5A7T6Q1 (Peroxidase 64 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G001160 PE=4 SV=1)

HSP 1 Score: 352.8 bits (904), Expect = 1.0e-93
Identity = 165/207 (79.71%), Postives = 184/207 (88.89%), Query Frame = 0


Query: 10  GYLVECRALEGGVMLTEESAETETNVVPTNMQNVVGKFNDVFEWSELLPPRRSIEHQIHL 69
           GYLVECRALE GV+L EE+   E N  P  +Q ++ K+NDVFEWSE LPPRR+IEH IHL
Sbjct: 101 GYLVECRALEAGVLLLEETTVEENNNAPEEVQKILAKYNDVFEWSETLPPRRAIEHHIHL 160

Query: 70  KTGTNLVNVRPHRYAFHQKAEMEKLVDEMLSSGIIQPSSSPYSSLVLLVKKKNGSWRFCV 129
           KTGT  VNVRP+ YAF QKAEMEKLVDEM+SSGIIQP +SPYSSLVLLVKK +GSWRFC+
Sbjct: 161 KTGTEPVNVRPYWYAFQQKAEMEKLVDEMMSSGIIQPDNSPYSSLVLLVKKTDGSWRFCM 220

Query: 130 DYHALNNVTIPDKFPIPIIEELFDELNGANLFSKIDLKAGYHQIRMHKEDVEKTAFRTHE 189
           +Y ALNN T+PDKFPIP+IEELFDELNGANLFSKIDLKAGYHQIRMHKED+EKTAFRTHE
Sbjct: 221 NYRALNNATVPDKFPIPVIEELFDELNGANLFSKIDLKAGYHQIRMHKEDIEKTAFRTHE 280

Query: 190 GHYEFLVMSFGLTNAPATFESLMNSIF 217
           GHYEFLVM FGLTNAPATF+SL+NS+F
Sbjct: 281 GHYEFLVMPFGLTNAPATFQSLVNSVF 307

[Close]

BLAST of Cmc04g0110211 vs. ExPASy TrEMBL
Match: A0A5D3CU29 (Peroxidase 64 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold692G00500 PE=4 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 1.9e-92
Identity = 170/216 (78.70%), Postives = 187/216 (86.57%), Query Frame = 0


Query: 1   MKAWTDFDQGYLVECRALEGGVMLTEESAETETNVVPTNMQNVVGKFNDVFEWSELLPPR 60
           MKAWTD DQGYLVECRAL+GGV+L+EE  E E N+VP ++Q ++ KFNDVFEW E LPPR
Sbjct: 215 MKAWTDSDQGYLVECRALQGGVILSEEVMEEEVNMVPADVQTMLDKFNDVFEWPETLPPR 274

Query: 61  RSIEHQIHLKTGTNLVNVRPHRYAFHQKAEMEKLVDEMLSSGIIQPSSSPYSSLVLLVKK 120
           R+IEHQIH+K GT  VNVRP+RYAFHQKAEME+LVDEMLSSGIIQPS+SPYSS VLLVKK
Sbjct: 275 RAIEHQIHMKLGTVPVNVRPYRYAFHQKAEMERLVDEMLSSGIIQPSNSPYSSPVLLVKK 334

Query: 121 KNGSWRFCVDYHALNNVTIPDKFPIPIIEELFDELNGANLFSKIDLKAGYHQIRMHKEDV 180
           K+GS   C DY A NN TI  KFPI +IEELFDELNGANLFSKIDLK GYHQIR HKED 
Sbjct: 335 KDGS---CADYRAFNNETIQYKFPILVIEELFDELNGANLFSKIDLKVGYHQIRRHKEDT 394

Query: 181 EKTAFRTHEGHYEFLVMSFGLTNAPATFESLMNSIF 217
           EKTAFRTHEGHYEFL+M FGL NAPATF+SLMNSIF
Sbjct: 395 EKTAFRTHEGHYEFLMMPFGLRNAPATFQSLMNSIF 427

[Close]

BLAST of Cmc04g0110211 vs. ExPASy TrEMBL
Match: A0A5D3DDC2 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold518G00130 PE=4 SV=1)

HSP 1 Score: 333.2 bits (853), Expect = 8.2e-88
Identity = 162/219 (73.97%), Postives = 184/219 (84.02%), Query Frame = 0


Query: 1   MKAWTDFDQGYLVECRALEGGVMLT---EESAETETNVVPTNMQNVVGKFNDVFEWSELL 60
           +K W + D GYL+ECR +E   + T   EE  ETE  ++P     ++ +F+DVFEW E L
Sbjct: 372 VKTWEEHDHGYLIECRPIEVVELKTFHKEEKEETEEKLIP-----ILNQFSDVFEWLEKL 431

Query: 61  PPRRSIEHQIHLKTGTNLVNVRPHRYAFHQKAEMEKLVDEMLSSGIIQPSSSPYSSLVLL 120
           PPRRSIEHQIHLK GTN VNVRP+RYA+HQK EMEKLV+EML SGII+PS+SPYSS VLL
Sbjct: 432 PPRRSIEHQIHLKEGTNPVNVRPYRYAYHQKEEMEKLVNEMLVSGIIRPSASPYSSPVLL 491

Query: 121 VKKKNGSWRFCVDYHALNNVTIPDKFPIPIIEELFDELNGANLFSKIDLKAGYHQIRMHK 180
           VKKK+GSWRFCVDY ALNNVTIPDKFPIPI+EELFDEL GA+LFSKIDLKAGYHQIRM  
Sbjct: 492 VKKKDGSWRFCVDYRALNNVTIPDKFPIPIVEELFDELGGASLFSKIDLKAGYHQIRMVD 551

Query: 181 EDVEKTAFRTHEGHYEFLVMSFGLTNAPATFESLMNSIF 217
            D+EKTAF+THEGHYEFLVM FGLTNAPATF+SLMNSIF
Sbjct: 552 RDIEKTAFQTHEGHYEFLVMPFGLTNAPATFQSLMNSIF 585

[Close]

BLAST of Cmc04g0110211 vs. TAIR 10
Match: ATMG00850.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 45.8 bits (107), Expect = 5.0e-05
Identity = 21/39 (53.85%), Postives = 29/39 (74.36%), Query Frame = 0


Query: 87  QKAEMEKLVDEMLSSGIIQPSSSPYSSLVLLVKKKNGSW 126
           ++  ++  + EML + IIQPS SPYSS VLLV+KK+G W
Sbjct: 41  RRTRLKNWLGEMLEARIIQPSISPYSSPVLLVQKKDGGW 79

The following BLAST results are available for this feature:

BLAST of Cmc04g0110211 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057242.1	1.1e-99	100.00	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK18719.1	1.1e-99	100.00	ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0037155.1	2.1e-93	79.71	peroxidase 64 [Cucumis melo var. makuwa] >TYK13918.1 peroxidase 64 [Cucumis melo...	[more]
KAA0061363.1	3.9e-92	78.70	peroxidase 64 [Cucumis melo var. makuwa] >TYK14718.1 peroxidase 64 [Cucumis melo...	[more]
TYK21518.1	1.7e-87	73.97	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0110211 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q99315	2.9e-34	43.98	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	2.9e-34	43.98	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q8I7P9	5.2e-31	39.78	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
P20825	8.9e-31	39.01	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	2.6e-30	40.34	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]

BLAST of Cmc04g0110211 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UN06	5.5e-100	100.00	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3D593	5.5e-100	100.00	Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7T6Q1	1.0e-93	79.71	Peroxidase 64 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold832G001160...	[more]
A0A5D3CU29	1.9e-92	78.70	Peroxidase 64 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold692G00500 ...	[more]
A0A5D3DDC2	8.2e-88	73.97	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Cmc04g0110211 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00850.1	5.0e-05	53.85	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 118..216 e-value: 3.8E-13 score: 49.5
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 143..214 e-value: 7.7E-62 score: 210.3
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 63..203 e-value: 7.7E-62 score: 210.3
None	No IPR available	PANTHER	PTHR24559:SF319	SUBFAMILY NOT NAMED	coord: 31..216
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 31..216
None	No IPR available	CDD	cd01647	RT_LTR	coord: 102..216 e-value: 6.39537E-64 score: 194.351
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 46..216

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0110211.1	Cmc04g0110211.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0098869	cellular oxidant detoxification
biological_process	GO:0015074	DNA integration
molecular_function	GO:0051537	2 iron, 2 sulfur cluster binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004601	peroxidase activity