Cmc04g0110011 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0110011
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Unknown protein
Location	CMiso1.1chr04: 29339981 .. 29340626 (+)
RNA-Seq Expression	Cmc04g0110011
Synteny	Cmc04g0110011

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCATATTCACATGGTGTAGAAAAAATTCTTGAAATTTCCACAACATTCCTATAAATAAATAACCCCATTTATAAGCACACATCTATATCATCATCATCAAACACCAAACTCTCTCTCTTATTTCTTCGTCTTCTTCTTCTTCTTCTCTTATTCTTCGATATATATATGGCAGGTCTTCAATACAAGTTCTTCCCCACTGACTTCCTCTACCCTCGTCCATCATCATCCTCCGACGTCCCCAACAACATCGTTGTCTCCGTCGTTCCTCCCAAAACCGACGATCTTACCGCCAAACCCAAGGGACCAAAATCATTAACCAACAACAAGGCCGGTGTTGTTGTTGTTGTTGAACCTATCGTCATCTCCCGGAATATTCCCAAAAGCTCCAATTTCTAATTTATATTATCAATATATAGTTTTTGTTTTTTGTTTTTTGTTTTTTGCTTTTTGGGTTTGCTTGATTAATTACTGTAATTTCATGATTGAAGTTGGAAAGCTATTTACTTGAGCTTGAGAATAATACAAAAAATTATATGAAGGAACAGAGTCCTTCTTCCTTAAACTTTATTGCAAATTTGATCAATAAATATATATACATATATATATATGTATATATCCTCTGAATTAATTTTATATCAATGTTT

mRNA sequence

TTTCATATTCACATGGTGTAGAAAAAATTCTTGAAATTTCCACAACATTCCTATAAATAAATAACCCCATTTATAAGCACACATCTATATCATCATCATCAAACACCAAACTCTCTCTCTTATTTCTTCGTCTTCTTCTTCTTCTTCTCTTATTCTTCGATATATATATGGCAGGTCTTCAATACAAGTTCTTCCCCACTGACTTCCTCTACCCTCGTCCATCATCATCCTCCGACGTCCCCAACAACATCGTTGTCTCCGTCGTTCCTCCCAAAACCGACGATCTTACCGCCAAACCCAAGGGACCAAAATCATTAACCAACAACAAGGCCGGTGTTGTTGTTGTTGTTGAACCTATCGTCATCTCCCGGAATATTCCCAAAAGCTCCAATTTCTAATTTATATTATCAATATATAGTTTTTGTTTTTTGTTTTTTGTTTTTTGCTTTTTGGGTTTGCTTGATTAATTACTGTAATTTCATGATTGAAGTTGGAAAGCTATTTACTTGAGCTTGAGAATAATACAAAAAATTATATGAAGGAACAGAGTCCTTCTTCCTTAAACTTTATTGCAAATTTGATCAATAAATATATATACATATATATATATGTATATATCCTCTGAATTAATTTTATATCAATGTTT

Coding sequence (CDS)

ATGGCAGGTCTTCAATACAAGTTCTTCCCCACTGACTTCCTCTACCCTCGTCCATCATCATCCTCCGACGTCCCCAACAACATCGTTGTCTCCGTCGTTCCTCCCAAAACCGACGATCTTACCGCCAAACCCAAGGGACCAAAATCATTAACCAACAACAAGGCCGGTGTTGTTGTTGTTGTTGAACCTATCGTCATCTCCCGGAATATTCCCAAAAGCTCCAATTTCTAA

Protein sequence

MAGLQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPKTDDLTAKPKGPKSLTNNKAGVVVVVEPIVISRNIPKSSNF

Homology

[Close]

BLAST of Cmc04g0110011 vs. NCBI nr
Match: KAA0057217.1 (hypothetical protein E6C27_scaffold280G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 151.0 bits (380), Expect = 4.2e-33
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 1  MAGLQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPKTDDLTAKPKGPKSLTNNKAGVVVV 60
          MAGLQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPK DDLTAKPKGPKSLTNNKAGVVVV
Sbjct: 1  MAGLQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPKPDDLTAKPKGPKSLTNNKAGVVVV 60

Query: 61 VEPIVISRNIPKSSNF 77
          VEPIVISRNIPKSSNF
Sbjct: 61 VEPIVISRNIPKSSNF 76

[Close]

BLAST of Cmc04g0110011 vs. NCBI nr
Match: KGN59725.1 (hypothetical protein Csa_002570 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 1.6e-24
Identity = 64/76 (84.21%), Postives = 65/76 (85.53%), Query Frame = 0


Query: 1  MAGLQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPKTDDLTAKPKGPKSLTNNKAGVVVV 60
          MAGLQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPK DDLTAKPKG    TNNKA   V 
Sbjct: 1  MAGLQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPKPDDLTAKPKGAIHSTNNKA--AVA 60

Query: 61 VEPIVISRNIPKSSNF 77
          VEPIVISRN PK+S F
Sbjct: 61 VEPIVISRNNPKNSTF 74

[Close]

BLAST of Cmc04g0110011 vs. NCBI nr
Match: KAG6581666.1 (putative galacturonosyltransferase 14, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.6 bits (161), Expect = 1.0e-07
Identity = 41/67 (61.19%), Postives = 46/67 (68.66%), Query Frame = 0


Query: 4   LQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPKTDDLTAKPKGPKSLTNNKAGVVVVVEP 63
           LQYKFFPTDFLYPRP  SSDV +NI VSVVPPK+DD +A  KG +   NNK  V  +V P
Sbjct: 507 LQYKFFPTDFLYPRP-PSSDVADNI-VSVVPPKSDDSSANSKG-RLHANNKPAVQPIVAP 566

Query: 64  IVISRNI 71
                NI
Sbjct: 567 APNPSNI 570

[Close]

BLAST of Cmc04g0110011 vs. ExPASy TrEMBL
Match: A0A5A7URF0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G00510 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 2.0e-33
Identity = 75/76 (98.68%), Postives = 75/76 (98.68%), Query Frame = 0


Query: 1  MAGLQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPKTDDLTAKPKGPKSLTNNKAGVVVV 60
          MAGLQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPK DDLTAKPKGPKSLTNNKAGVVVV
Sbjct: 1  MAGLQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPKPDDLTAKPKGPKSLTNNKAGVVVV 60

Query: 61 VEPIVISRNIPKSSNF 77
          VEPIVISRNIPKSSNF
Sbjct: 61 VEPIVISRNIPKSSNF 76

[Close]

BLAST of Cmc04g0110011 vs. ExPASy TrEMBL
Match: A0A0A0LCI2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G841490 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 7.7e-25
Identity = 64/76 (84.21%), Postives = 65/76 (85.53%), Query Frame = 0


Query: 1  MAGLQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPKTDDLTAKPKGPKSLTNNKAGVVVV 60
          MAGLQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPK DDLTAKPKG    TNNKA   V 
Sbjct: 1  MAGLQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPKPDDLTAKPKGAIHSTNNKA--AVA 60

Query: 61 VEPIVISRNIPKSSNF 77
          VEPIVISRN PK+S F
Sbjct: 61 VEPIVISRNNPKNSTF 74

The following BLAST results are available for this feature:

BLAST of Cmc04g0110011 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0057217.1	4.2e-33	98.68	hypothetical protein E6C27_scaffold280G00510 [Cucumis melo var. makuwa]	[more]
KGN59725.1	1.6e-24	84.21	hypothetical protein Csa_002570 [Cucumis sativus]	[more]
KAG6581666.1	1.0e-07	61.19	putative galacturonosyltransferase 14, partial [Cucurbita argyrosperma subsp. so...	[more]

BLAST of Cmc04g0110011 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc04g0110011 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7URF0	2.0e-33	98.68	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A0A0LCI2	7.7e-25	84.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G841490 PE=4 SV=1	[more]

BLAST of Cmc04g0110011 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR38223	FAMILY NOT NAMED	coord: 1..74
None	No IPR available	PANTHER	PTHR38223:SF4	SUBFAMILY NOT NAMED	coord: 1..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0110011.1	Cmc04g0110011.1	mRNA