Cmc04g0109701 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0109701
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr04: 29065286 .. 29065954 (+)
RNA-Seq Expression	Cmc04g0109701
Synteny	Cmc04g0109701

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATTAGAATGGAAGAAGGGAAGATTGCTGTGATACGCGATTGGGCAGTGTCAAAATCAGTCTCGGAGTTACGCTCCTTCCTCGGACTGGCGAATTACTATTGTCGATTTGTCGAGGGATTCTCCAAACGAGCAAGCCCGCTGACTGAACTACTGAAAAAAGACGTTCACTGGAGTTGGGACCCCGAGTGCCAAGCCACCTTCGACGACCTAAAACAAGCCATGATGGAGAGGCCACTTCTGGGGATTGCGAATGTGACCAAACCTTTCAAAGTCGAGACAAATGCGTCAGATTATGCGTTGGGGGGTGTGCTCCTGCAGAATGGGCACCCGATCGCATACGAAAGTCGAAAGTTGAATGCAGCCGAAAGGAGGTATACTGTATCCGAAAAAGAAATGCTCGCAGTAGTACATTGTTTGAGGGCCTGGAGACAATACCTACTAGGTTCGTCGTTTGTAGTGAAAACGGACAACAGTGCGACCTGCCACTTCTTTACCCAGCCAAAGTTGACTTCGAAGCAAGCAAGATGACAGGAATTTCTGGCCGAGTTCGACTTCGAATTTGAACACAAGAAGGGGTCAAGCAACCAGGCTGCTGATGCCCTAAGTTGAAAACAAGAACATGCAGCCATATGCCTGTTAGCTGACCTCCGAGGGAGCAAGATTGGTG

mRNA sequence

GAATTAGAATGGAAGAAGGGAAGATTGCTGTGATACGCGATTGGGCAGTGTCAAAATCAGTCTCGGAGTTACGCTCCTTCCTCGGACTGGCGAATTACTATTGTCGATTTGTCGAGGGATTCTCCAAACGAGCAAGCCCGCTGACTGAACTACTGAAAAAAGACGTTCACTGGAGTTGGGACCCCGAGTGCCAAGCCACCTTCGACGACCTAAAACAAGCCATGATGGAGAGGCCACTTCTGGGGATTGCGAATGTGACCAAACCTTTCAAAGTCGAGACAAATGCGTCAGATTATGCGTTGGGGGGTGTGCTCCTGCAGAATGGGCACCCGATCGCATACGAAAGTCGAAAGTTGAATGCAGCCGAAAGGAGGTATACTGTATCCGAAAAAGAAATGCTCGCAGTAGTACATTGTTTGAGGGCCTGGAGACAATACCTACTAGGTTCGTCGTTTGTAGTGAAAACGGACAACAGTGCGACCTGCCACTTCTTTACCCAGCCAAAGTTGACTTCGAAGCAAGCAAGATGACAGGAATTTCTGGCCGAGTTCGACTTCGAATTTGAACACAAGAAGGGGTCAAGCAACCAGGCTGCTGATGCCCTAAGTTGAAAACAAGAACATGCAGCCATATGCCTGTTAGCTGACCTCCGAGGGAGCAAGATTGGTG

Coding sequence (CDS)

ATGGAAGAAGGGAAGATTGCTGTGATACGCGATTGGGCAGTGTCAAAATCAGTCTCGGAGTTACGCTCCTTCCTCGGACTGGCGAATTACTATTGTCGATTTGTCGAGGGATTCTCCAAACGAGCAAGCCCGCTGACTGAACTACTGAAAAAAGACGTTCACTGGAGTTGGGACCCCGAGTGCCAAGCCACCTTCGACGACCTAAAACAAGCCATGATGGAGAGGCCACTTCTGGGGATTGCGAATGTGACCAAACCTTTCAAAGTCGAGACAAATGCGTCAGATTATGCGTTGGGGGGTGTGCTCCTGCAGAATGGGCACCCGATCGCATACGAAAGTCGAAAGTTGAATGCAGCCGAAAGGAGGTATACTGTATCCGAAAAAGAAATGCTCGCAGTAGTACATTGTTTGAGGGCCTGGAGACAATACCTACTAGGTTCGTCGTTTGTAGTGAAAACGGACAACAGTGCGACCTGCCACTTCTTTACCCAGCCAAAGTTGACTTCGAAGCAAGCAAGATGA

Protein sequence

MEEGKIAVIRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPECQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGGVLLQNGHPIAYESRKLNAAERRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR

Homology

[Close]

BLAST of Cmc04g0109701 vs. NCBI nr
Match: TYK07954.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 332.8 bits (852), Expect = 1.8e-87
Identity = 161/173 (93.06%), Postives = 167/173 (96.53%), Query Frame = 0


Query: 1    MEEGKIAVIRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPE 60
            MEEGKIA IRDWA+ KSVSELRSFLGLANYY RFVEGFSKRASPLTELLKKDVHW+WDPE
Sbjct: 846  MEEGKIAAIRDWAMPKSVSELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPE 905

Query: 61   CQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGGVLLQNGHPIAYESRKLNAAE 120
            CQA FD LKQA+ME PLLGIA+VTKPF+VET+ASDYALGGVLLQNGHPIAYESRKLNAAE
Sbjct: 906  CQAAFDGLKQALMEGPLLGIADVTKPFEVETDASDYALGGVLLQNGHPIAYESRKLNAAE 965

Query: 121  RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR 174
            RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR
Sbjct: 966  RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR 1018

[Close]

BLAST of Cmc04g0109701 vs. NCBI nr
Match: KAA0036604.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 332.8 bits (852), Expect = 1.8e-87
Identity = 161/173 (93.06%), Postives = 167/173 (96.53%), Query Frame = 0


Query: 1    MEEGKIAVIRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPE 60
            MEEGKIA IRDWA+ KSVSELRSFLGLANYY RFVEGFSKRASPLTELLKKDVHW+WDPE
Sbjct: 843  MEEGKIAAIRDWAMPKSVSELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPE 902

Query: 61   CQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGGVLLQNGHPIAYESRKLNAAE 120
            CQA FD LKQA+ME PLLGIA+VTKPF+VET+ASDYALGGVLLQNGHPIAYESRKLNAAE
Sbjct: 903  CQAAFDGLKQALMEGPLLGIADVTKPFEVETDASDYALGGVLLQNGHPIAYESRKLNAAE 962

Query: 121  RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR 174
            RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR
Sbjct: 963  RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR 1015

[Close]

BLAST of Cmc04g0109701 vs. NCBI nr
Match: KAA0035531.1 (uncharacterized protein E6C27_scaffold285G001970 [Cucumis melo var. makuwa])

HSP 1 Score: 332.4 bits (851), Expect = 2.3e-87
Identity = 161/173 (93.06%), Postives = 166/173 (95.95%), Query Frame = 0


Query: 1   MEEGKIAVIRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPE 60
           MEEGKIA IRDWAV KSVSELRSFLGLANYY RFVEGFSKRASPLTELLKKDVHW+WDPE
Sbjct: 407 MEEGKIAAIRDWAVPKSVSELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPE 466

Query: 61  CQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGGVLLQNGHPIAYESRKLNAAE 120
           CQ  FD LKQA+ME PLLGIA+VTKPF+VET+ASDYALGGVLLQNGHPIAYESRKLNAAE
Sbjct: 467 CQTAFDGLKQALMEGPLLGIADVTKPFEVETDASDYALGGVLLQNGHPIAYESRKLNAAE 526

Query: 121 RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR 174
           RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR
Sbjct: 527 RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR 579

[Close]

BLAST of Cmc04g0109701 vs. NCBI nr
Match: KAA0051481.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 331.6 bits (849), Expect = 3.9e-87
Identity = 160/173 (92.49%), Postives = 166/173 (95.95%), Query Frame = 0


Query: 1   MEEGKIAVIRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPE 60
           MEEGKIA IRDWA+ KSVSELRSFLGLANYY RFVEGF KRASPLTELLKKDVHW+WDPE
Sbjct: 727 MEEGKIAAIRDWAIPKSVSELRSFLGLANYYRRFVEGFLKRASPLTELLKKDVHWNWDPE 786

Query: 61  CQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGGVLLQNGHPIAYESRKLNAAE 120
           CQA FDDLKQA+ME PLLGIA+VTKPF+VET+ASDYALGGVLLQNGHPIAYESRKLNAA 
Sbjct: 787 CQAAFDDLKQALMEGPLLGIADVTKPFEVETDASDYALGGVLLQNGHPIAYESRKLNAAA 846

Query: 121 RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR 174
           RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR
Sbjct: 847 RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR 899

[Close]

BLAST of Cmc04g0109701 vs. NCBI nr
Match: KAA0067557.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 331.3 bits (848), Expect = 5.1e-87
Identity = 160/173 (92.49%), Postives = 166/173 (95.95%), Query Frame = 0


Query: 1    MEEGKIAVIRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPE 60
            MEEGKIA IRDWA+ KSVSELRSFLGLANYY RFVEGFSKRASPLTELLKKDVHW+WDPE
Sbjct: 872  MEEGKIAAIRDWAMPKSVSELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPE 931

Query: 61   CQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGGVLLQNGHPIAYESRKLNAAE 120
            CQ  FD LKQA+ME PLLGIA+VTKPF+VET+ASDYALGGVLLQNGHPIAYESRKLNAAE
Sbjct: 932  CQTAFDGLKQALMEGPLLGIADVTKPFEVETDASDYALGGVLLQNGHPIAYESRKLNAAE 991

Query: 121  RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR 174
            RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR
Sbjct: 992  RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR 1044

[Close]

BLAST of Cmc04g0109701 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.5e-28
Identity = 65/170 (38.24%), Postives = 99/170 (58.24%), Query Frame = 0


Query: 5   KIAVIRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHW-SWDPECQA 64
           KI  I+ + +     E+++FLGL  YY +F+  F+  A P+T+ LKK++   + +PE  +
Sbjct: 426 KIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDS 485

Query: 65  TFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGGVLLQNGHPIAYESRKLNAAERRY 124
            F  LK  + E P+L + + TK F + T+ASD ALG VL Q+GHP++Y SR LN  E  Y
Sbjct: 486 AFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEINY 545

Query: 125 TVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR 174
           +  EKE+LA+V   + +R YLLG  F + +D+      +      SK  R
Sbjct: 546 STIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKDPNSKLTR 595

[Close]

BLAST of Cmc04g0109701 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.5e-25
Identity = 59/154 (38.31%), Postives = 88/154 (57.14%), Query Frame = 0


Query: 9   IRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPECQATFDDL 68
           +  W   K+  ELR FLG  NY  +F+   S+   PL  LLKKDV W W P      +++
Sbjct: 630 VLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENI 689

Query: 69  KQAMMERPLLGIANVTKPFKVETNASDYALGGVLLQNG-----HPIAYESRKLNAAERRY 128
           KQ ++  P+L   + +K   +ET+ASD A+G VL Q       +P+ Y S K++ A+  Y
Sbjct: 690 KQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNY 749

Query: 129 TVSEKEMLAVVHCLRAWRQYLLGS--SFVVKTDN 156
           +VS+KEMLA++  L+ WR YL  +   F + TD+
Sbjct: 750 SVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDH 783

[Close]

BLAST of Cmc04g0109701 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.5e-25
Identity = 59/154 (38.31%), Postives = 88/154 (57.14%), Query Frame = 0


Query: 9   IRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPECQATFDDL 68
           +  W   K+  ELR FLG  NY  +F+   S+   PL  LLKKDV W W P      +++
Sbjct: 630 VLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENI 689

Query: 69  KQAMMERPLLGIANVTKPFKVETNASDYALGGVLLQNG-----HPIAYESRKLNAAERRY 128
           KQ ++  P+L   + +K   +ET+ASD A+G VL Q       +P+ Y S K++ A+  Y
Sbjct: 690 KQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNY 749

Query: 129 TVSEKEMLAVVHCLRAWRQYLLGS--SFVVKTDN 156
           +VS+KEMLA++  L+ WR YL  +   F + TD+
Sbjct: 750 SVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDH 783

[Close]

BLAST of Cmc04g0109701 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.5e-25
Identity = 59/154 (38.31%), Postives = 88/154 (57.14%), Query Frame = 0


Query: 9   IRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPECQATFDDL 68
           +  W   K+  ELR FLG  NY  +F+   S+   PL  LLKKDV W W P      +++
Sbjct: 630 VLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENI 689

Query: 69  KQAMMERPLLGIANVTKPFKVETNASDYALGGVLLQNG-----HPIAYESRKLNAAERRY 128
           KQ ++  P+L   + +K   +ET+ASD A+G VL Q       +P+ Y S K++ A+  Y
Sbjct: 690 KQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNY 749

Query: 129 TVSEKEMLAVVHCLRAWRQYLLGS--SFVVKTDN 156
           +VS+KEMLA++  L+ WR YL  +   F + TD+
Sbjct: 750 SVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDH 783

[Close]

BLAST of Cmc04g0109701 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 4.5e-25
Identity = 59/154 (38.31%), Postives = 88/154 (57.14%), Query Frame = 0


Query: 9   IRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPECQATFDDL 68
           +  W   K+  ELR FLG  NY  +F+   S+   PL  LLKKDV W W P      +++
Sbjct: 630 VLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENI 689

Query: 69  KQAMMERPLLGIANVTKPFKVETNASDYALGGVLLQNG-----HPIAYESRKLNAAERRY 128
           KQ ++  P+L   + +K   +ET+ASD A+G VL Q       +P+ Y S K++ A+  Y
Sbjct: 690 KQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNY 749

Query: 129 TVSEKEMLAVVHCLRAWRQYLLGS--SFVVKTDN 156
           +VS+KEMLA++  L+ WR YL  +   F + TD+
Sbjct: 750 SVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDH 783

[Close]

BLAST of Cmc04g0109701 vs. ExPASy TrEMBL
Match: A0A5D3C9P8 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G00750 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 8.6e-88
Identity = 161/173 (93.06%), Postives = 167/173 (96.53%), Query Frame = 0


Query: 1    MEEGKIAVIRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPE 60
            MEEGKIA IRDWA+ KSVSELRSFLGLANYY RFVEGFSKRASPLTELLKKDVHW+WDPE
Sbjct: 846  MEEGKIAAIRDWAMPKSVSELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPE 905

Query: 61   CQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGGVLLQNGHPIAYESRKLNAAE 120
            CQA FD LKQA+ME PLLGIA+VTKPF+VET+ASDYALGGVLLQNGHPIAYESRKLNAAE
Sbjct: 906  CQAAFDGLKQALMEGPLLGIADVTKPFEVETDASDYALGGVLLQNGHPIAYESRKLNAAE 965

Query: 121  RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR 174
            RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR
Sbjct: 966  RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR 1018

[Close]

BLAST of Cmc04g0109701 vs. ExPASy TrEMBL
Match: A0A5A7SZ91 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G001280 PE=4 SV=1)

HSP 1 Score: 332.8 bits (852), Expect = 8.6e-88
Identity = 161/173 (93.06%), Postives = 167/173 (96.53%), Query Frame = 0


Query: 1    MEEGKIAVIRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPE 60
            MEEGKIA IRDWA+ KSVSELRSFLGLANYY RFVEGFSKRASPLTELLKKDVHW+WDPE
Sbjct: 843  MEEGKIAAIRDWAMPKSVSELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPE 902

Query: 61   CQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGGVLLQNGHPIAYESRKLNAAE 120
            CQA FD LKQA+ME PLLGIA+VTKPF+VET+ASDYALGGVLLQNGHPIAYESRKLNAAE
Sbjct: 903  CQAAFDGLKQALMEGPLLGIADVTKPFEVETDASDYALGGVLLQNGHPIAYESRKLNAAE 962

Query: 121  RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR 174
            RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR
Sbjct: 963  RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR 1015

[Close]

BLAST of Cmc04g0109701 vs. ExPASy TrEMBL
Match: A0A5A7T1S6 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G001970 PE=4 SV=1)

HSP 1 Score: 332.4 bits (851), Expect = 1.1e-87
Identity = 161/173 (93.06%), Postives = 166/173 (95.95%), Query Frame = 0


Query: 1   MEEGKIAVIRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPE 60
           MEEGKIA IRDWAV KSVSELRSFLGLANYY RFVEGFSKRASPLTELLKKDVHW+WDPE
Sbjct: 407 MEEGKIAAIRDWAVPKSVSELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPE 466

Query: 61  CQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGGVLLQNGHPIAYESRKLNAAE 120
           CQ  FD LKQA+ME PLLGIA+VTKPF+VET+ASDYALGGVLLQNGHPIAYESRKLNAAE
Sbjct: 467 CQTAFDGLKQALMEGPLLGIADVTKPFEVETDASDYALGGVLLQNGHPIAYESRKLNAAE 526

Query: 121 RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR 174
           RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR
Sbjct: 527 RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR 579

[Close]

BLAST of Cmc04g0109701 vs. ExPASy TrEMBL
Match: A0A5A7UD54 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G002510 PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 1.9e-87
Identity = 160/173 (92.49%), Postives = 166/173 (95.95%), Query Frame = 0


Query: 1   MEEGKIAVIRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPE 60
           MEEGKIA IRDWA+ KSVSELRSFLGLANYY RFVEGF KRASPLTELLKKDVHW+WDPE
Sbjct: 727 MEEGKIAAIRDWAIPKSVSELRSFLGLANYYRRFVEGFLKRASPLTELLKKDVHWNWDPE 786

Query: 61  CQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGGVLLQNGHPIAYESRKLNAAE 120
           CQA FDDLKQA+ME PLLGIA+VTKPF+VET+ASDYALGGVLLQNGHPIAYESRKLNAA 
Sbjct: 787 CQAAFDDLKQALMEGPLLGIADVTKPFEVETDASDYALGGVLLQNGHPIAYESRKLNAAA 846

Query: 121 RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR 174
           RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR
Sbjct: 847 RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR 899

[Close]

BLAST of Cmc04g0109701 vs. ExPASy TrEMBL
Match: A0A5D3C4R1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001990 PE=4 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 2.5e-87
Identity = 160/173 (92.49%), Postives = 166/173 (95.95%), Query Frame = 0


Query: 1    MEEGKIAVIRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPE 60
            MEEGKIA IRDWA+ KSVSELRSFLGLANYY RFVEGFSKRASPLTELLKKDVHW+WDPE
Sbjct: 876  MEEGKIAAIRDWAMPKSVSELRSFLGLANYYRRFVEGFSKRASPLTELLKKDVHWNWDPE 935

Query: 61   CQATFDDLKQAMMERPLLGIANVTKPFKVETNASDYALGGVLLQNGHPIAYESRKLNAAE 120
            CQ  FD LKQA+ME PLLGIA+VTKPF+VET+ASDYALGGVLLQNGHPIAYESRKLNAAE
Sbjct: 936  CQTAFDGLKQALMEGPLLGIADVTKPFEVETDASDYALGGVLLQNGHPIAYESRKLNAAE 995

Query: 121  RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR 174
            RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR
Sbjct: 996  RRYTVSEKEMLAVVHCLRAWRQYLLGSSFVVKTDNSATCHFFTQPKLTSKQAR 1048

[Close]

BLAST of Cmc04g0109701 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 64.7 bits (156), Expect = 8.4e-11
Identity = 33/86 (38.37%), Postives = 46/86 (53.49%), Query Frame = 0


Query: 2   EEGKIAVIRDWAVSKSVSELRSFLGLANYYCRFVEGFSKRASPLTELLKKDVHWSWDPEC 61
           +  K+  +  W   K+ +ELR FLGL  YY RFV+ + K   PLTELLKK+    W    
Sbjct: 47  DPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKN-SLKWTEMA 106

Query: 62  QATFDDLKQAMMERPLLGIANVTKPF 88
              F  LK A+   P+L + ++  PF
Sbjct: 107 ALAFKALKGAVTTLPVLALPDLKLPF 131

The following BLAST results are available for this feature:

BLAST of Cmc04g0109701 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK07954.1	1.8e-87	93.06	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0036604.1	1.8e-87	93.06	polyprotein [Cucumis melo var. makuwa]	[more]
KAA0035531.1	2.3e-87	93.06	uncharacterized protein E6C27_scaffold285G001970 [Cucumis melo var. makuwa]	[more]
KAA0051481.1	3.9e-87	92.49	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0067557.1	5.1e-87	92.49	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0109701 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	2.5e-28	38.24	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
Q9UR07	4.5e-25	38.31	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	4.5e-25	38.31	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	4.5e-25	38.31	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	4.5e-25	38.31	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc04g0109701 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C9P8	8.6e-88	93.06	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold26...	[more]
A0A5A7SZ91	8.6e-88	93.06	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold191G001280 P...	[more]
A0A5A7T1S6	1.1e-87	93.06	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7UD54	1.9e-87	92.49	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55...	[more]
A0A5D3C4R1	2.5e-87	92.49	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]

BLAST of Cmc04g0109701 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	8.4e-11	38.37	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 4..93 e-value: 2.2E-26 score: 93.7
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 57..151 e-value: 6.5E-33 score: 112.7
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 5..165
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 5..165
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 89..173 e-value: 5.79215E-42 score: 134.928
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 3..172

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0109701.1	Cmc04g0109701.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding