Cmc04g0108471 (gene) Melon (Charmono) v1.1

Overview
NameCmc04g0108471
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionRetrotrans_gag domain-containing protein
LocationCMiso1.1chr04: 28008543 .. 28008997 (-)
RNA-Seq ExpressionCmc04g0108471
SyntenyCmc04g0108471
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTCCCCACACATGACCCATTTATTTCTTCCAATTGCTTTGGAGGTTATGTATTATGCAAAACGACGAAAAACACAAGTGTTAGTGAGGGGTTTGGCCTTCAACTAGAAAACAAGTTGACGCGAAACATCTTCGAATTTCCAAGTACATGATAGGGTGCTCGTGTGCAAGTCAAGGCCCATGGCCGAGGCCTTGGAGTACAAATCACGGCCATGGGCACGCGCGCCGTGCGTCAATGGGCGTGCGTGGGGAGCTCGCTGCACGCCCATGCGTCTGCGGGGGGCGTGCGCACAGGGTGCCGCGCGCGCCATGCGTCTGCGGGCGTGTGTGGGGCGCGCGTCGCAAGCCCAGGCGATGCAGTGGGGCGTGCGCGTAGGGTGCCGCACACGCCATGCTTGTGCGAGCGTGGGGATCCGTCTAAGGGGCGTGCGTTCTTGGCTTGTAAGTGGCAGATGA

mRNA sequence

CCTCCCCACACATGACCCATTTATTTCTTCCAATTGCTTTGGAGGTTATGTATTATGCAAAACGACGAAAAACACAAGTGTTAGTGAGGGGTTTGGCCTTCAACTAGAAAACAAGTTGACGCGAAACATCTTCGAATTTCCAAGTACATGATAGGGTGCTCGTGTGCAAGTCAAGGCCCATGGCCGAGGCCTTGGAGTACAAATCACGGCCATGGGCACGCGCGCCGTGCGTCAATGGGCGTGCGTGGGGAGCTCGCTGCACGCCCATGCGTCTGCGGGGGGCGTGCGCACAGGGTGCCGCGCGCGCCATGCGTCTGCGGGCGTGTGTGGGGCGCGCGTCGCAAGCCCAGGCGATGCAGTGGGGCGTGCGCGTAGGGTGCCGCACACGCCATGCTTGTGCGAGCGTGGGGATCCGTCTAAGGGGCGTGCGTTCTTGGCTTGTAAGTGGCAGATGA

Coding sequence (CDS)

ATGGCCGAGGCCTTGGAGTACAAATCACGGCCATGGGCACGCGCGCCGTGCGTCAATGGGCGTGCGTGGGGAGCTCGCTGCACGCCCATGCGTCTGCGGGGGGCGTGCGCACAGGGTGCCGCGCGCGCCATGCGTCTGCGGGCGTGTGTGGGGCGCGCGTCGCAAGCCCAGGCGATGCAGTGGGGCGTGCGCGTAGGGTGCCGCACACGCCATGCTTGTGCGAGCGTGGGGATCCGTCTAAGGGGCGTGCGTTCTTGGCTTGTAAGTGGCAGATGA

Protein sequence

MAEALEYKSRPWARAPCVNGRAWGARCTPMRLRGACAQGAARAMRLRACVGRASQAQAMQWGVRVGCRTRHACASVGIRLRGVRSWLVSGR
Homology
[Close]
BLAST of Cmc04g0108471 vs. NCBI nr
Match: KAA0053169.1 (uncharacterized protein E6C27_scaffold1121G00060 [Cucumis melo var. makuwa] >TYK21291.1 uncharacterized protein E5676_scaffold1775G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-05
Identity = 39/76 (51.32%), Postives = 48/76 (63.16%), Query Frame = 0 

Query: 2   AEALEYKSRPWARAPCVNGRAWGARCTPMRLRGACAQGAARAMRLRACVGRASQAQAMQW 61
           AEALEYK+RPWA APCV+GR W AR  P+RLRGACA  A +A      VG A +   ++ 
Sbjct: 39  AEALEYKARPWACAPCVSGRQWVARSMPVRLRGACAWRAPQAH--ATAVGHARRVPRVK- 98

Query: 62  GVRV---GCRTRHACA 75
           G+ V   G R RH  +
Sbjct: 99  GIIVQERGGRLRHTAS 111

[Close]
BLAST of Cmc04g0108471 vs. ExPASy TrEMBL
Match: A0A5A7UI67 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1775G00050 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 7.4e-06
Identity = 39/76 (51.32%), Postives = 48/76 (63.16%), Query Frame = 0 

Query: 2   AEALEYKSRPWARAPCVNGRAWGARCTPMRLRGACAQGAARAMRLRACVGRASQAQAMQW 61
           AEALEYK+RPWA APCV+GR W AR  P+RLRGACA  A +A      VG A +   ++ 
Sbjct: 39  AEALEYKARPWACAPCVSGRQWVARSMPVRLRGACAWRAPQAH--ATAVGHARRVPRVK- 98

Query: 62  GVRV---GCRTRHACA 75
           G+ V   G R RH  +
Sbjct: 99  GIIVQERGGRLRHTAS 111

The following BLAST results are available for this feature:
BLAST of Cmc04g0108471 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0053169.11.5e-0551.32uncharacterized protein E6C27_scaffold1121G00060 [Cucumis melo var. makuwa] >TYK... [more]
BLAST of Cmc04g0108471 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Cmc04g0108471 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UI677.4e-0651.32Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
BLAST of Cmc04g0108471 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc04g0108471.1Cmc04g0108471.1mRNA