Cmc04g0108161 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0108161
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	CMiso1.1chr04: 27108715 .. 27109251 (+)
RNA-Seq Expression	Cmc04g0108161
Synteny	Cmc04g0108161

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATGTTTTATTCAAATAAATCAAACTTTGATCTAGTTGGTTATGCAGATGCTGGATATTTATCTGATCCACACAAAGCAAGATCTCAAACAGGTTATCTGTTTACATGTGGAGGAACTGCTATATCTTGGCGATCTGTAAAGCAAACCATGACGGCCACTTCATCGAATCATGCAGAAATTCTTGCAATTCATGAAGCTAGTAGAGAATGTGTATGGTTGAGGTCAATGACTCATCATATTCGAGAAACATGTGGTTTGTCTTTCAGTAAAAATTTACCAACAATATTATTTGAAAATAATACCGCATGTATAGCACAAATCAAAGGAAGGTATATAAAAGGAGATAGAACAAAGCATATTTCACCAAAACTTTTCTATACGCATGACCTTGAAGAAAATGGTGACATCAGTGTTCAACAAATTTCTTTAAAAGACAACTTGGGAGACTTATTCACAAAAGCATTACCCACATCAACATTTGAAAAGCTAGTGCGCAACATTGGAATGCGACGACTCAGAGAACTTAAGTGA

mRNA sequence

ATGGGTATGTTTTATTCAAATAAATCAAACTTTGATCTAGTTGGTTATGCAGATGCTGGATATTTATCTGATCCACACAAAGCAAGATCTCAAACAGGTTATCTGTTTACATGTGGAGGAACTGCTATATCTTGGCGATCTGTAAAGCAAACCATGACGGCCACTTCATCGAATCATGCAGAAATTCTTGCAATTCATGAAGCTAGTAGAGAATGTGTATGGTTGAGGTCAATGACTCATCATATTCGAGAAACATGTGGTTTGTCTTTCAGTAAAAATTTACCAACAATATTATTTGAAAATAATACCGCATGTATAGCACAAATCAAAGGAAGGTATATAAAAGGAGATAGAACAAAGCATATTTCACCAAAACTTTTCTATACGCATGACCTTGAAGAAAATGGTGACATCAGTGTTCAACAAATTTCTTTAAAAGACAACTTGGGAGACTTATTCACAAAAGCATTACCCACATCAACATTTGAAAAGCTAGTGCGCAACATTGGAATGCGACGACTCAGAGAACTTAAGTGA

Coding sequence (CDS)

ATGGGTATGTTTTATTCAAATAAATCAAACTTTGATCTAGTTGGTTATGCAGATGCTGGATATTTATCTGATCCACACAAAGCAAGATCTCAAACAGGTTATCTGTTTACATGTGGAGGAACTGCTATATCTTGGCGATCTGTAAAGCAAACCATGACGGCCACTTCATCGAATCATGCAGAAATTCTTGCAATTCATGAAGCTAGTAGAGAATGTGTATGGTTGAGGTCAATGACTCATCATATTCGAGAAACATGTGGTTTGTCTTTCAGTAAAAATTTACCAACAATATTATTTGAAAATAATACCGCATGTATAGCACAAATCAAAGGAAGGTATATAAAAGGAGATAGAACAAAGCATATTTCACCAAAACTTTTCTATACGCATGACCTTGAAGAAAATGGTGACATCAGTGTTCAACAAATTTCTTTAAAAGACAACTTGGGAGACTTATTCACAAAAGCATTACCCACATCAACATTTGAAAAGCTAGTGCGCAACATTGGAATGCGACGACTCAGAGAACTTAAGTGA

Protein sequence

MGMFYSNKSNFDLVGYADAGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTMTATSSNHAEILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFENNTACIAQIKGRYIKGDRTKHISPKLFYTHDLEENGDISVQQISLKDNLGDLFTKALPTSTFEKLVRNIGMRRLRELK

Homology

[Close]

BLAST of Cmc04g0108161 vs. NCBI nr
Match: TYK21506.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 337.0 bits (863), Expect = 9.6e-89
Identity = 166/178 (93.26%), Postives = 171/178 (96.07%), Query Frame = 0


Query: 1   MGMFYSNKSNFDLVGYADAGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTMTATSSNHA 60
           MG+FYSNKSNFDLVGYADAG+LSDPHKARSQTGYLFTC GTAISWRSVKQTMTATSSNHA
Sbjct: 82  MGLFYSNKSNFDLVGYADAGHLSDPHKARSQTGYLFTCEGTAISWRSVKQTMTATSSNHA 141

Query: 61  EILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFENNTACIAQIKGRYIKGDRTK 120
           EILAIHEASRECVWLRSMTH+IRETCGLSFSKNLPTILFE+NTACI QIKG YIKGDRTK
Sbjct: 142 EILAIHEASRECVWLRSMTHYIRETCGLSFSKNLPTILFEDNTACITQIKGGYIKGDRTK 201

Query: 121 HISPKLFYTHDLEENGDISVQQISLKDNLGDLFTKALPTSTFEKLVRNIGMRRLRELK 179
           HISPKLFYTHDLEENGDISVQQIS KDNL DLFTKAL TSTFEKLV NIGMR+LRELK
Sbjct: 202 HISPKLFYTHDLEENGDISVQQISSKDNLVDLFTKALLTSTFEKLVHNIGMRQLRELK 259

[Close]

BLAST of Cmc04g0108161 vs. NCBI nr
Match: KAA0067250.1 (Pol [Cucumis melo var. makuwa] >TYK10859.1 Pol [Cucumis melo var. makuwa])

HSP 1 Score: 330.1 bits (845), Expect = 1.2e-86
Identity = 163/178 (91.57%), Postives = 167/178 (93.82%), Query Frame = 0


Query: 1   MGMFYSNKSNFDLVGYADAGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTMTATSSNHA 60
           M +FYSNKSNFDLVGYADAGYLSDP KARSQ GYLFT GGTAISWRSVKQTMTATSSNHA
Sbjct: 92  MSLFYSNKSNFDLVGYADAGYLSDPDKARSQIGYLFTWGGTAISWRSVKQTMTATSSNHA 151

Query: 61  EILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFENNTACIAQIKGRYIKGDRTK 120
           EILAIHE SRECVWLRSMTHHIRETCGLSFSKNLPTILFE+NTACIAQIKG YIKGDRTK
Sbjct: 152 EILAIHEVSRECVWLRSMTHHIRETCGLSFSKNLPTILFEDNTACIAQIKGGYIKGDRTK 211

Query: 121 HISPKLFYTHDLEENGDISVQQISLKDNLGDLFTKALPTSTFEKLVRNIGMRRLRELK 179
           H+SPKLFYTH+LEENGDISVQQIS KDNL DLFTKALPT TFEKLV NIGM RLRELK
Sbjct: 212 HMSPKLFYTHELEENGDISVQQISSKDNLVDLFTKALPTPTFEKLVHNIGMGRLRELK 269

[Close]

BLAST of Cmc04g0108161 vs. NCBI nr
Match: KAF7137709.1 (hypothetical protein RHSIM_Rhsim07G0041900 [Rhododendron simsii])

HSP 1 Score: 293.1 bits (749), Expect = 1.6e-75
Identity = 139/177 (78.53%), Postives = 154/177 (87.01%), Query Frame = 0


Query: 1    MGMFYSNKSNFDLVGYADAGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTMTATSSNHA 60
            +G+FYSN S   L+GYADAGYLSDPHKARSQTGY+FTCGG AISWRSVKQT+TATSSNH+
Sbjct: 1031 LGLFYSNGSASQLIGYADAGYLSDPHKARSQTGYVFTCGGAAISWRSVKQTLTATSSNHS 1090

Query: 61   EILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFENNTACIAQIKGRYIKGDRTK 120
            EI+AIHE SRECVWLRSM  HIRE CGLS  K+ PTIL+E+N ACI QIKG YIKGDRTK
Sbjct: 1091 EIIAIHETSRECVWLRSMIQHIREKCGLSSIKDCPTILYEDNAACITQIKGGYIKGDRTK 1150

Query: 121  HISPKLFYTHDLEENGDISVQQISLKDNLGDLFTKALPTSTFEKLVRNIGMRRLREL 178
            HISPK FYTHDL++NGDI VQQI   DNL DLFTKALPT+TF+KLV NIGMRRL+ L
Sbjct: 1151 HISPKFFYTHDLQKNGDIDVQQIRSSDNLADLFTKALPTTTFKKLVANIGMRRLKNL 1207

[Close]

BLAST of Cmc04g0108161 vs. NCBI nr
Match: ERM98543.1 (hypothetical protein AMTR_s04311p00004950, partial [Amborella trichopoda])

HSP 1 Score: 292.7 bits (748), Expect = 2.1e-75
Identity = 138/176 (78.41%), Postives = 154/176 (87.50%), Query Frame = 0


Query: 2   GMFYSNKSNFDLVGYADAGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTMTATSSNHAE 61
           G+FYSN     L+GYADAGYLSDPHKARSQTGYLFTCG TAISWRS KQT+ ATSSNHAE
Sbjct: 105 GLFYSNNCGSQLIGYADAGYLSDPHKARSQTGYLFTCGDTAISWRSTKQTLVATSSNHAE 164

Query: 62  ILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFENNTACIAQIKGRYIKGDRTKH 121
           ILAIHEASRECVWLRSMT HIR TCGL+ +K +PTIL+E+N ACIAQ+KG YIKGDRTKH
Sbjct: 165 ILAIHEASRECVWLRSMTQHIRGTCGLTSNKEVPTILYEDNAACIAQLKGGYIKGDRTKH 224

Query: 122 ISPKLFYTHDLEENGDISVQQISLKDNLGDLFTKALPTSTFEKLVRNIGMRRLREL 178
           ISPK F+TH+L+ENGDI VQQI   DNL DLFTK+LPTSTFEK+V  IGMRRL++L
Sbjct: 225 ISPKFFFTHNLQENGDIDVQQIRSSDNLADLFTKSLPTSTFEKMVHKIGMRRLKDL 280

[Close]

BLAST of Cmc04g0108161 vs. NCBI nr
Match: AQY61297.1 (Pol [Coffea canephora])

HSP 1 Score: 288.1 bits (736), Expect = 5.1e-74
Identity = 138/179 (77.09%), Postives = 161/179 (89.94%), Query Frame = 0


Query: 1    MGMFYSNKSNFDLVGYADAGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTMTATSSNHA 60
            +G+FYSNKS  +LVGY DAGYLS+PHKARSQTGYLFT GGTAISWRS KQ++ ATSSNHA
Sbjct: 867  LGLFYSNKSKPELVGYTDAGYLSNPHKARSQTGYLFTYGGTAISWRSTKQSLAATSSNHA 926

Query: 61   EILAIHEASRECVWLRSMTHHIRETCGLSFSK-NLPTILFENNTACIAQIKGRYIKGDRT 120
            EI+AIHEASRECVWLRSMTH+IR+ CGLS  K N PTIL+E+N ACIAQ+KGRYIKGDRT
Sbjct: 927  EIIAIHEASRECVWLRSMTHYIRKNCGLSSEKENPPTILYEDNAACIAQLKGRYIKGDRT 986

Query: 121  KHISPKLFYTHDLEENGDISVQQISLKDNLGDLFTKALPTSTFEKLVRNIGMRRLRELK 179
            KHISPK F+THDL++NG+I VQQI   +NL DLFTKALPT+TFEKLV++IGM+RL++LK
Sbjct: 987  KHISPKFFFTHDLQKNGEIDVQQIRSDNNLTDLFTKALPTATFEKLVKSIGMQRLKDLK 1045

[Close]

BLAST of Cmc04g0108161 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.3e-15
Identity = 49/159 (30.82%), Postives = 74/159 (46.54%), Query Frame = 0


Query: 13   LVGYADAGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTMTATSSNHAEILAIHEASREC 72
            L GY DA    D    +S TGYLFT  G AISW+S  Q   A S+  AE +A  E  +E 
Sbjct: 1175 LKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEM 1234

Query: 73   VWLRSMTHHIRETCGLSFSKNLPTILFENNTACIAQIKGRYIKGDRTKHISPKLFYTHDL 132
            +WL+           L   +    +  ++ +A        Y    RTKHI  +  +  ++
Sbjct: 1235 IWLKRFLQE------LGLHQKEYVVYCDSQSAIDLSKNSMY--HARTKHIDVRYHWIREM 1294

Query: 133  EENGDISVQQISLKDNLGDLFTKALPTSTFEKLVRNIGM 172
             ++  + V +IS  +N  D+ TK +P + FE     +GM
Sbjct: 1295 VDDESLKVLKISTNENPADMLTKVVPRNKFELCKELVGM 1325

[Close]

BLAST of Cmc04g0108161 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 81.3 bits (199), Expect = 1.3e-14
Identity = 48/160 (30.00%), Postives = 78/160 (48.75%), Query Frame = 0


Query: 13   LVGYADAGYLSDPHKARSQTGYLFTC-GGTAISWRSVKQTMTATSSNHAEILAIHEASRE 72
            ++GY D+ +       +S TGYLF       I W + +Q   A SS  AE +A+ EA RE
Sbjct: 1248 IIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVRE 1307

Query: 73   CVWLRSMTHHIRETCGLSFSKNLPTILFENNTACIAQIKGRYIKGDRTKHISPKLFYTHD 132
             +WL+ +         ++     P  ++E+N  CI+ I        R KHI  K  +  +
Sbjct: 1308 ALWLKFL------LTSINIKLENPIKIYEDNQGCIS-IANNPSCHKRAKHIDIKYHFARE 1367

Query: 133  LEENGDISVQQISLKDNLGDLFTKALPTSTFEKLVRNIGM 172
              +N  I ++ I  ++ L D+FTK LP + F +L   +G+
Sbjct: 1368 QVQNNVICLEYIPTENQLADIFTKPLPAARFVELRDKLGL 1400

[Close]

BLAST of Cmc04g0108161 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.4e-10
Identity = 33/82 (40.24%), Postives = 45/82 (54.88%), Query Frame = 0


Query: 2   GMFYSNKSNFDLVGYADAGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTMTATSSNHAE 61
           G+ ++      LVGY+DA +  D    RS +GYLF   G  +SWRS KQ   A SS   E
Sbjct: 60  GLEFTRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDE 119

Query: 62  ILAIHEASRECVWLRSMTHHIR 84
            +A+ EA++E VWL   T   +
Sbjct: 120 YMALSEATQEAVWLTVRTRRTK 141

[Close]

BLAST of Cmc04g0108161 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-09
Identity = 48/158 (30.38%), Postives = 75/158 (47.47%), Query Frame = 0


Query: 8    KSNFDLVGYADAGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTMTATSSNHAEILAIHE 67
            K +  LV  +DA Y + P+  +SQ G +F   G  I  +S K ++T TS+  AEI A+ E
Sbjct: 1615 KPDNKLVAISDASYGNQPY-YKSQIGNIFLLNGKVIGGKSTKASLTCTSTTEAEIHAVSE 1674

Query: 68   ASRECVWLRSMTHHIRETCGLSFSKNLPTILFENNTACIAQIKGRYIKGDRTKHISPKLF 127
            A      L +++H ++E       K L T    ++ + I+ IK    +  R +    K  
Sbjct: 1675 A---IPLLNNLSHLVQELNKKPIIKGLLT----DSRSTISIIKSTNEEKFRNRFFGTKAM 1734

Query: 128  YTHDLEENGDISVQQISLKDNLGDLFTKALPTSTFEKL 166
               D     ++ V  I  K N+ D+ TK LP  TF+ L
Sbjct: 1735 RLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTFKLL 1764

[Close]

BLAST of Cmc04g0108161 vs. ExPASy Swiss-Prot
Match: P25384 (Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-C PE=3 SV=2)

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-09
Identity = 48/158 (30.38%), Postives = 75/158 (47.47%), Query Frame = 0


Query: 8    KSNFDLVGYADAGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTMTATSSNHAEILAIHE 67
            K +  LV  +DA Y + P+  +SQ G +F   G  I  +S K ++T TS+  AEI A+ E
Sbjct: 1615 KPDNKLVAISDASYGNQPY-YKSQIGNIFLLNGKVIGGKSTKASLTCTSTTEAEIHAVSE 1674

Query: 68   ASRECVWLRSMTHHIRETCGLSFSKNLPTILFENNTACIAQIKGRYIKGDRTKHISPKLF 127
            A      L +++H ++E       K L T    ++ + I+ IK    +  R +    K  
Sbjct: 1675 A---IPLLNNLSHLVQELNKKPIIKGLLT----DSRSTISIIKSTNEEKFRNRFFGTKAM 1734

Query: 128  YTHDLEENGDISVQQISLKDNLGDLFTKALPTSTFEKL 166
               D     ++ V  I  K N+ D+ TK LP  TF+ L
Sbjct: 1735 RLRDEVSGNNLYVYYIETKKNIADVMTKPLPIKTFKLL 1764

[Close]

BLAST of Cmc04g0108161 vs. ExPASy TrEMBL
Match: A0A5D3DD63 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold518G00010 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 4.7e-89
Identity = 166/178 (93.26%), Postives = 171/178 (96.07%), Query Frame = 0


Query: 1   MGMFYSNKSNFDLVGYADAGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTMTATSSNHA 60
           MG+FYSNKSNFDLVGYADAG+LSDPHKARSQTGYLFTC GTAISWRSVKQTMTATSSNHA
Sbjct: 82  MGLFYSNKSNFDLVGYADAGHLSDPHKARSQTGYLFTCEGTAISWRSVKQTMTATSSNHA 141

Query: 61  EILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFENNTACIAQIKGRYIKGDRTK 120
           EILAIHEASRECVWLRSMTH+IRETCGLSFSKNLPTILFE+NTACI QIKG YIKGDRTK
Sbjct: 142 EILAIHEASRECVWLRSMTHYIRETCGLSFSKNLPTILFEDNTACITQIKGGYIKGDRTK 201

Query: 121 HISPKLFYTHDLEENGDISVQQISLKDNLGDLFTKALPTSTFEKLVRNIGMRRLRELK 179
           HISPKLFYTHDLEENGDISVQQIS KDNL DLFTKAL TSTFEKLV NIGMR+LRELK
Sbjct: 202 HISPKLFYTHDLEENGDISVQQISSKDNLVDLFTKALLTSTFEKLVHNIGMRQLRELK 259

[Close]

BLAST of Cmc04g0108161 vs. ExPASy TrEMBL
Match: A0A5D3CKU4 (Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00300 PE=4 SV=1)

HSP 1 Score: 330.1 bits (845), Expect = 5.7e-87
Identity = 163/178 (91.57%), Postives = 167/178 (93.82%), Query Frame = 0


Query: 1   MGMFYSNKSNFDLVGYADAGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTMTATSSNHA 60
           M +FYSNKSNFDLVGYADAGYLSDP KARSQ GYLFT GGTAISWRSVKQTMTATSSNHA
Sbjct: 92  MSLFYSNKSNFDLVGYADAGYLSDPDKARSQIGYLFTWGGTAISWRSVKQTMTATSSNHA 151

Query: 61  EILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFENNTACIAQIKGRYIKGDRTK 120
           EILAIHE SRECVWLRSMTHHIRETCGLSFSKNLPTILFE+NTACIAQIKG YIKGDRTK
Sbjct: 152 EILAIHEVSRECVWLRSMTHHIRETCGLSFSKNLPTILFEDNTACIAQIKGGYIKGDRTK 211

Query: 121 HISPKLFYTHDLEENGDISVQQISLKDNLGDLFTKALPTSTFEKLVRNIGMRRLRELK 179
           H+SPKLFYTH+LEENGDISVQQIS KDNL DLFTKALPT TFEKLV NIGM RLRELK
Sbjct: 212 HMSPKLFYTHELEENGDISVQQISSKDNLVDLFTKALPTPTFEKLVHNIGMGRLRELK 269

[Close]

BLAST of Cmc04g0108161 vs. ExPASy TrEMBL
Match: U5CXL6 (Uncharacterized protein (Fragment) OS=Amborella trichopoda OX=13333 GN=AMTR_s04311p00004950 PE=4 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 1.0e-75
Identity = 138/176 (78.41%), Postives = 154/176 (87.50%), Query Frame = 0


Query: 2   GMFYSNKSNFDLVGYADAGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTMTATSSNHAE 61
           G+FYSN     L+GYADAGYLSDPHKARSQTGYLFTCG TAISWRS KQT+ ATSSNHAE
Sbjct: 105 GLFYSNNCGSQLIGYADAGYLSDPHKARSQTGYLFTCGDTAISWRSTKQTLVATSSNHAE 164

Query: 62  ILAIHEASRECVWLRSMTHHIRETCGLSFSKNLPTILFENNTACIAQIKGRYIKGDRTKH 121
           ILAIHEASRECVWLRSMT HIR TCGL+ +K +PTIL+E+N ACIAQ+KG YIKGDRTKH
Sbjct: 165 ILAIHEASRECVWLRSMTQHIRGTCGLTSNKEVPTILYEDNAACIAQLKGGYIKGDRTKH 224

Query: 122 ISPKLFYTHDLEENGDISVQQISLKDNLGDLFTKALPTSTFEKLVRNIGMRRLREL 178
           ISPK F+TH+L+ENGDI VQQI   DNL DLFTK+LPTSTFEK+V  IGMRRL++L
Sbjct: 225 ISPKFFFTHNLQENGDIDVQQIRSSDNLADLFTKSLPTSTFEKMVHKIGMRRLKDL 280

[Close]

BLAST of Cmc04g0108161 vs. ExPASy TrEMBL
Match: A0A1U9WY86 (Pol OS=Coffea canephora OX=49390 GN=Pol PE=4 SV=1)

HSP 1 Score: 288.1 bits (736), Expect = 2.5e-74
Identity = 138/179 (77.09%), Postives = 161/179 (89.94%), Query Frame = 0


Query: 1    MGMFYSNKSNFDLVGYADAGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTMTATSSNHA 60
            +G+FYSNKS  +LVGY DAGYLS+PHKARSQTGYLFT GGTAISWRS KQ++ ATSSNHA
Sbjct: 867  LGLFYSNKSKPELVGYTDAGYLSNPHKARSQTGYLFTYGGTAISWRSTKQSLAATSSNHA 926

Query: 61   EILAIHEASRECVWLRSMTHHIRETCGLSFSK-NLPTILFENNTACIAQIKGRYIKGDRT 120
            EI+AIHEASRECVWLRSMTH+IR+ CGLS  K N PTIL+E+N ACIAQ+KGRYIKGDRT
Sbjct: 927  EIIAIHEASRECVWLRSMTHYIRKNCGLSSEKENPPTILYEDNAACIAQLKGRYIKGDRT 986

Query: 121  KHISPKLFYTHDLEENGDISVQQISLKDNLGDLFTKALPTSTFEKLVRNIGMRRLRELK 179
            KHISPK F+THDL++NG+I VQQI   +NL DLFTKALPT+TFEKLV++IGM+RL++LK
Sbjct: 987  KHISPKFFFTHDLQKNGEIDVQQIRSDNNLTDLFTKALPTATFEKLVKSIGMQRLKDLK 1045

[Close]

BLAST of Cmc04g0108161 vs. ExPASy TrEMBL
Match: A0A1U9WYE0 (Pol OS=Coffea arabica OX=13443 GN=Pol PE=4 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 4.2e-74
Identity = 138/179 (77.09%), Postives = 160/179 (89.39%), Query Frame = 0


Query: 1    MGMFYSNKSNFDLVGYADAGYLSDPHKARSQTGYLFTCGGTAISWRSVKQTMTATSSNHA 60
            +G+FYSNKS  +LVGYADAGYLSDPHKARSQTGYLFT GGTAISWRS KQ++ ATSSNHA
Sbjct: 982  LGLFYSNKSKPELVGYADAGYLSDPHKARSQTGYLFTYGGTAISWRSTKQSLAATSSNHA 1041

Query: 61   EILAIHEASRECVWLRSMTHHIRETCGLSFSK-NLPTILFENNTACIAQIKGRYIKGDRT 120
            EI+AIHEASRECVWLRSMTH+IR+ CGLS  K N PTIL+E+N ACIAQ+KG YIKGDRT
Sbjct: 1042 EIIAIHEASRECVWLRSMTHYIRKNCGLSSGKENPPTILYEDNAACIAQLKGGYIKGDRT 1101

Query: 121  KHISPKLFYTHDLEENGDISVQQISLKDNLGDLFTKALPTSTFEKLVRNIGMRRLRELK 179
            KHISPK F+THDL++N +I VQQI   +NL DLFTKALPT+TFEKLV++IGM+RL++LK
Sbjct: 1102 KHISPKFFFTHDLQKNSEIDVQQIRSDNNLADLFTKALPTATFEKLVKSIGMQRLKDLK 1160

The following BLAST results are available for this feature:

BLAST of Cmc04g0108161 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK21506.1	9.6e-89	93.26	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0067250.1	1.2e-86	91.57	Pol [Cucumis melo var. makuwa] >TYK10859.1 Pol [Cucumis melo var. makuwa]	[more]
KAF7137709.1	1.6e-75	78.53	hypothetical protein RHSIM_Rhsim07G0041900 [Rhododendron simsii]	[more]
ERM98543.1	2.1e-75	78.41	hypothetical protein AMTR_s04311p00004950, partial [Amborella trichopoda]	[more]
AQY61297.1	5.1e-74	77.09	Pol [Coffea canephora]	[more]

BLAST of Cmc04g0108161 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	7.3e-15	30.82	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.3e-14	30.00	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P0CV72	2.4e-10	40.24	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
Q12491	1.2e-09	30.38	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P25384	1.2e-09	30.38	Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc04g0108161 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DD63	4.7e-89	93.26	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CKU4	5.7e-87	91.57	Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00300 PE=4 SV=1	[more]
U5CXL6	1.0e-75	78.41	Uncharacterized protein (Fragment) OS=Amborella trichopoda OX=13333 GN=AMTR_s043...	[more]
A0A1U9WY86	2.5e-74	77.09	Pol OS=Coffea canephora OX=49390 GN=Pol PE=4 SV=1	[more]
A0A1U9WYE0	4.2e-74	77.09	Pol OS=Coffea arabica OX=13443 GN=Pol PE=4 SV=1	[more]

BLAST of Cmc04g0108161 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 14..159 e-value: 1.95852E-49 score: 154.548

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0108161.1	Cmc04g0108161.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity