Cmc04g0107791 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0107791
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ribonuclease H
Location	CMiso1.1chr04: 26336602 .. 26337174 (-)
RNA-Seq Expression	Cmc04g0107791
Synteny	Cmc04g0107791

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGATGCCACTACTGGACACGAGGCACTATCCTTTATGGATGGGTCGTCTGGATATAATCAAATACGAATGGACCTTTCAGATGAAGAAATAACAGCTTTCAGGACCCCAAAGGGAATATATTGTTACAAGGTGATACCCTTTGGATTAAAAAATGCTGGTGCCACTTATCAACGTGCTATGCAAAAAGTGTTTGACGATATGCTACATAAGTATGTCGAGTGCTACGTTGATGACCTTGTGGTCAAATCCAAGAGACGACAAGACCATCTGAAGGATCTAAAAGTTGTGTTCGACCGCTTGCGAAAATATCAGTTGACGATGAACCCTCTCAAATGCGCGTTCGGTGTAACTTCAGGAAAGTTTCTTGGCTTTATTGTAAGGCATCGAGGGATTGAGATAGACCAGTCCAAGATTGATGCCATTCAGAAGATGCCAAGGCCAAAGAGTTTGCATGACCTAAGAAGTCTCCAAGGACGATTGGCTTACATTCGAAGGTTCATCTCCAACCTGGCTGGTCAGTGCCAACCTTTTCAAAAGTTGATGAGAAAAGGAGAAACTTTTGTGTGA

mRNA sequence

ATGGTTGATGCCACTACTGGACACGAGGCACTATCCTTTATGGATGGGTCGTCTGGATATAATCAAATACGAATGGACCTTTCAGATGAAGAAATAACAGCTTTCAGGACCCCAAAGGGAATATATTGTTACAAGGTGATACCCTTTGGATTAAAAAATGCTGGTGCCACTTATCAACGTGCTATGCAAAAAGTGTTTGACGATATGCTACATAAGTATGTCGAGTGCTACGTTGATGACCTTGTGGTCAAATCCAAGAGACGACAAGACCATCTGAAGGATCTAAAAGTTGTGTTCGACCGCTTGCGAAAATATCAGTTGACGATGAACCCTCTCAAATGCGCGTTCGGTGTAACTTCAGGAAAGTTTCTTGGCTTTATTGTAAGGCATCGAGGGATTGAGATAGACCAGTCCAAGATTGATGCCATTCAGAAGATGCCAAGGCCAAAGAGTTTGCATGACCTAAGAAGTCTCCAAGGACGATTGGCTTACATTCGAAGGTTCATCTCCAACCTGGCTGGTCAGTGCCAACCTTTTCAAAAGTTGATGAGAAAAGGAGAAACTTTTGTGTGA

Coding sequence (CDS)

ATGGTTGATGCCACTACTGGACACGAGGCACTATCCTTTATGGATGGGTCGTCTGGATATAATCAAATACGAATGGACCTTTCAGATGAAGAAATAACAGCTTTCAGGACCCCAAAGGGAATATATTGTTACAAGGTGATACCCTTTGGATTAAAAAATGCTGGTGCCACTTATCAACGTGCTATGCAAAAAGTGTTTGACGATATGCTACATAAGTATGTCGAGTGCTACGTTGATGACCTTGTGGTCAAATCCAAGAGACGACAAGACCATCTGAAGGATCTAAAAGTTGTGTTCGACCGCTTGCGAAAATATCAGTTGACGATGAACCCTCTCAAATGCGCGTTCGGTGTAACTTCAGGAAAGTTTCTTGGCTTTATTGTAAGGCATCGAGGGATTGAGATAGACCAGTCCAAGATTGATGCCATTCAGAAGATGCCAAGGCCAAAGAGTTTGCATGACCTAAGAAGTCTCCAAGGACGATTGGCTTACATTCGAAGGTTCATCTCCAACCTGGCTGGTCAGTGCCAACCTTTTCAAAAGTTGATGAGAAAAGGAGAAACTTTTGTGTGA

Protein sequence

MVDATTGHEALSFMDGSSGYNQIRMDLSDEEITAFRTPKGIYCYKVIPFGLKNAGATYQRAMQKVFDDMLHKYVECYVDDLVVKSKRRQDHLKDLKVVFDRLRKYQLTMNPLKCAFGVTSGKFLGFIVRHRGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLAGQCQPFQKLMRKGETFV

Homology

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BLAST of Cmc04g0107791 vs. NCBI nr
Match: KAA0054151.1 (uncharacterized protein E6C27_scaffold131G00750 [Cucumis melo var. makuwa])

HSP 1 Score: 377.9 bits (969), Expect = 5.3e-101
Identity = 182/190 (95.79%), Postives = 187/190 (98.42%), Query Frame = 0


Query: 1   MVDATTGHEALSFMDGSSGYNQIRMDLSDEEITAFRTPKGIYCYKVIPFGLKNAGATYQR 60
           MVDATTGHEALSFMDGSSGYNQI+MDLSDEE+TAFRT KGIYCYKV+PFGLKN GATYQR
Sbjct: 150 MVDATTGHEALSFMDGSSGYNQIQMDLSDEEMTAFRTSKGIYCYKVMPFGLKNVGATYQR 209

Query: 61  AMQKVFDDMLHKYVECYVDDLVVKSKRRQDHLKDLKVVFDRLRKYQLTMNPLKCAFGVTS 120
           AMQKVFDDMLHKYVECYVDDLVVKSKRRQDHLKDLKV+FDRLRKYQL MNPLKCAFGVTS
Sbjct: 210 AMQKVFDDMLHKYVECYVDDLVVKSKRRQDHLKDLKVMFDRLRKYQLRMNPLKCAFGVTS 269

Query: 121 GKFLGFIVRHRGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLAGQCQPFQ 180
           GKFLGFIVRHRGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLAG+CQPFQ
Sbjct: 270 GKFLGFIVRHRGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLAGRCQPFQ 329

Query: 181 KLMRKGETFV 191
           KLMRKGETFV
Sbjct: 330 KLMRKGETFV 339

[Close]

BLAST of Cmc04g0107791 vs. NCBI nr
Match: KAA0033244.1 (uncharacterized protein E6C27_scaffold845G00390 [Cucumis melo var. makuwa] >TYK19597.1 uncharacterized protein E5676_scaffold9G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 377.5 bits (968), Expect = 6.9e-101
Identity = 183/190 (96.32%), Postives = 185/190 (97.37%), Query Frame = 0


Query: 1   MVDATTGHEALSFMDGSSGYNQIRMDLSDEEITAFRTPKGIYCYKVIPFGLKNAGATYQR 60
           MVDATTGHE LSFMDGSSGYNQIRM LSDEE+TAFRTPKGIYCYKVIPFGLKNAGATYQR
Sbjct: 382 MVDATTGHETLSFMDGSSGYNQIRMALSDEEMTAFRTPKGIYCYKVIPFGLKNAGATYQR 441

Query: 61  AMQKVFDDMLHKYVECYVDDLVVKSKRRQDHLKDLKVVFDRLRKYQLTMNPLKCAFGVTS 120
           AMQKVFDDMLHKYVECYVDDLVVKSKRRQDHLKDLKVVFDRLRKYQL MNPLKCAF VTS
Sbjct: 442 AMQKVFDDMLHKYVECYVDDLVVKSKRRQDHLKDLKVVFDRLRKYQLRMNPLKCAFSVTS 501

Query: 121 GKFLGFIVRHRGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLAGQCQPFQ 180
           GKFLGFIVRHRGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLAG+CQPFQ
Sbjct: 502 GKFLGFIVRHRGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLAGRCQPFQ 561

Query: 181 KLMRKGETFV 191
           KLMRKGE FV
Sbjct: 562 KLMRKGENFV 571

[Close]

BLAST of Cmc04g0107791 vs. NCBI nr
Match: KAA0065979.1 (uncharacterized protein E6C27_scaffold62G00640 [Cucumis melo var. makuwa])

HSP 1 Score: 376.7 bits (966), Expect = 1.2e-100
Identity = 182/190 (95.79%), Postives = 186/190 (97.89%), Query Frame = 0


Query: 1   MVDATTGHEALSFMDGSSGYNQIRMDLSDEEITAFRTPKGIYCYKVIPFGLKNAGATYQR 60
           MVDATTGHEALSFMDGSSGYNQIRM LSDEEITAFRTPKGIYCYKV+PFGLKNAGATYQR
Sbjct: 225 MVDATTGHEALSFMDGSSGYNQIRMALSDEEITAFRTPKGIYCYKVMPFGLKNAGATYQR 284

Query: 61  AMQKVFDDMLHKYVECYVDDLVVKSKRRQDHLKDLKVVFDRLRKYQLTMNPLKCAFGVTS 120
           AMQKVFDDMLHKYVECY DDLVVKSKRRQDHLKDLKVVFDRLRKYQL MNPLKCAFGVTS
Sbjct: 285 AMQKVFDDMLHKYVECYADDLVVKSKRRQDHLKDLKVVFDRLRKYQLRMNPLKCAFGVTS 344

Query: 121 GKFLGFIVRHRGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLAGQCQPFQ 180
           GKFLGFIVRHRGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYI+RFISNLAG+CQPFQ
Sbjct: 345 GKFLGFIVRHRGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIQRFISNLAGRCQPFQ 404

Query: 181 KLMRKGETFV 191
           KLMRKGE F+
Sbjct: 405 KLMRKGEKFL 414

[Close]

BLAST of Cmc04g0107791 vs. NCBI nr
Match: TYK28924.1 (uncharacterized protein E5676_scaffold120G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 376.7 bits (966), Expect = 1.2e-100
Identity = 182/190 (95.79%), Postives = 186/190 (97.89%), Query Frame = 0


Query: 1   MVDATTGHEALSFMDGSSGYNQIRMDLSDEEITAFRTPKGIYCYKVIPFGLKNAGATYQR 60
           MVDATTGHEALSFMDGSSGYNQIRM LSDEEITAFRTPKGIYCYKV+PFGLKNAGATYQR
Sbjct: 225 MVDATTGHEALSFMDGSSGYNQIRMALSDEEITAFRTPKGIYCYKVMPFGLKNAGATYQR 284

Query: 61  AMQKVFDDMLHKYVECYVDDLVVKSKRRQDHLKDLKVVFDRLRKYQLTMNPLKCAFGVTS 120
           AMQKVFDDMLHKYVECY DDLVVKSKRRQDHLKDLKVVFDRLRKYQL MNPLKCAFGVTS
Sbjct: 285 AMQKVFDDMLHKYVECYADDLVVKSKRRQDHLKDLKVVFDRLRKYQLRMNPLKCAFGVTS 344

Query: 121 GKFLGFIVRHRGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLAGQCQPFQ 180
           GKFLGFIVRHRGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYI+RFISNLAG+CQPFQ
Sbjct: 345 GKFLGFIVRHRGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIQRFISNLAGRCQPFQ 404

Query: 181 KLMRKGETFV 191
           KLMRKGE F+
Sbjct: 405 KLMRKGEKFL 414

[Close]

BLAST of Cmc04g0107791 vs. NCBI nr
Match: TYK28756.1 (uncharacterized protein E5676_scaffold403G001090 [Cucumis melo var. makuwa])

HSP 1 Score: 376.3 bits (965), Expect = 1.5e-100
Identity = 181/190 (95.26%), Postives = 187/190 (98.42%), Query Frame = 0


Query: 1   MVDATTGHEALSFMDGSSGYNQIRMDLSDEEITAFRTPKGIYCYKVIPFGLKNAGATYQR 60
           MVDATTGHEALSFMDGSSGYNQIR+ LSDEE+TAFRTPKGIYCYKV+PFGLKNAGATYQR
Sbjct: 311 MVDATTGHEALSFMDGSSGYNQIRIALSDEEMTAFRTPKGIYCYKVMPFGLKNAGATYQR 370

Query: 61  AMQKVFDDMLHKYVECYVDDLVVKSKRRQDHLKDLKVVFDRLRKYQLTMNPLKCAFGVTS 120
           AMQKVFDDMLHKYVECYVDDLVVKSKRRQDHLKDLKVVFDRLRKYQL MNPLKCAFG+TS
Sbjct: 371 AMQKVFDDMLHKYVECYVDDLVVKSKRRQDHLKDLKVVFDRLRKYQLRMNPLKCAFGLTS 430

Query: 121 GKFLGFIVRHRGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLAGQCQPFQ 180
           GKFLGFIVRHRGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLAG+CQPFQ
Sbjct: 431 GKFLGFIVRHRGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLAGRCQPFQ 490

Query: 181 KLMRKGETFV 191
           KLMRKGE F+
Sbjct: 491 KLMRKGENFM 500

[Close]

BLAST of Cmc04g0107791 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 4.7e-28
Identity = 66/172 (38.37%), Postives = 98/172 (56.98%), Query Frame = 0


Query: 14  MDGSSGYNQIRMDLSDEEITAFRTPKGIYCYKVIPFGLKNAGATYQRAMQKVFDDMLHKY 73
           +D + G++QI MD      TAF T  G Y Y  +PFGLKNA AT+QR M  +   +L+K+
Sbjct: 301 IDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNAPATFQRCMNDILRPLLNKH 360

Query: 74  VECYVDDLVVKSKRRQDHLKDLKVVFDRLRKYQLTMNPLKCAFGVTSGKFLGFIVRHRGI 133
              Y+DD++V S    +HL+ L +VF++L K  L +   KC F      FLG ++   GI
Sbjct: 361 CLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGI 420

Query: 134 EIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLAGQCQPFQKLMRK 186
           + +  KI+AIQK P P    ++++  G   Y R+FI N A   +P  K ++K
Sbjct: 421 KPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTKCLKK 472

[Close]

BLAST of Cmc04g0107791 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.6e-26
Identity = 56/179 (31.28%), Postives = 97/179 (54.19%), Query Frame = 0


Query: 7   GHEALSFMDGSSGYNQIRMDLSDEEITAFRTPKGIYCYKVIPFGLKNAGATYQRAMQKVF 66
           G    + +D  S Y+ IR+   DE   AFR P+G++ Y V+P+G+  A A +Q  +  + 
Sbjct: 494 GSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTIL 553

Query: 67  DDMLHKYVECYVDDLVVKSKRRQDHLKDLKVVFDRLRKYQLTMNPLKCAFGVTSGKFLGF 126
            +    +V CY+DD+++ SK   +H+K +K V  +L+   L +N  KC F  +  KF+G+
Sbjct: 554 GEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGY 613

Query: 127 IVRHRGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLAGQCQPFQKLMRK 186
            +  +G    Q  ID + +  +PK+  +LR   G + Y+R+FI   +    P   L++K
Sbjct: 614 HISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKK 672

[Close]

BLAST of Cmc04g0107791 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.6e-26
Identity = 56/179 (31.28%), Postives = 97/179 (54.19%), Query Frame = 0


Query: 7   GHEALSFMDGSSGYNQIRMDLSDEEITAFRTPKGIYCYKVIPFGLKNAGATYQRAMQKVF 66
           G    + +D  S Y+ IR+   DE   AFR P+G++ Y V+P+G+  A A +Q  +  + 
Sbjct: 494 GSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTIL 553

Query: 67  DDMLHKYVECYVDDLVVKSKRRQDHLKDLKVVFDRLRKYQLTMNPLKCAFGVTSGKFLGF 126
            +    +V CY+DD+++ SK   +H+K +K V  +L+   L +N  KC F  +  KF+G+
Sbjct: 554 GEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGY 613

Query: 127 IVRHRGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLAGQCQPFQKLMRK 186
            +  +G    Q  ID + +  +PK+  +LR   G + Y+R+FI   +    P   L++K
Sbjct: 614 HISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKK 672

[Close]

BLAST of Cmc04g0107791 vs. ExPASy Swiss-Prot
Match: P0CT35 (Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-2 PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.6e-26
Identity = 56/179 (31.28%), Postives = 97/179 (54.19%), Query Frame = 0


Query: 7   GHEALSFMDGSSGYNQIRMDLSDEEITAFRTPKGIYCYKVIPFGLKNAGATYQRAMQKVF 66
           G    + +D  S Y+ IR+   DE   AFR P+G++ Y V+P+G+  A A +Q  +  + 
Sbjct: 494 GSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTIL 553

Query: 67  DDMLHKYVECYVDDLVVKSKRRQDHLKDLKVVFDRLRKYQLTMNPLKCAFGVTSGKFLGF 126
            +    +V CY+DD+++ SK   +H+K +K V  +L+   L +N  KC F  +  KF+G+
Sbjct: 554 GEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGY 613

Query: 127 IVRHRGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLAGQCQPFQKLMRK 186
            +  +G    Q  ID + +  +PK+  +LR   G + Y+R+FI   +    P   L++K
Sbjct: 614 HISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKK 672

[Close]

BLAST of Cmc04g0107791 vs. ExPASy Swiss-Prot
Match: P0CT36 (Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-3 PE=1 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 2.6e-26
Identity = 56/179 (31.28%), Postives = 97/179 (54.19%), Query Frame = 0


Query: 7   GHEALSFMDGSSGYNQIRMDLSDEEITAFRTPKGIYCYKVIPFGLKNAGATYQRAMQKVF 66
           G    + +D  S Y+ IR+   DE   AFR P+G++ Y V+P+G+  A A +Q  +  + 
Sbjct: 494 GSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGISTAPAHFQYFINTIL 553

Query: 67  DDMLHKYVECYVDDLVVKSKRRQDHLKDLKVVFDRLRKYQLTMNPLKCAFGVTSGKFLGF 126
            +    +V CY+DD+++ SK   +H+K +K V  +L+   L +N  KC F  +  KF+G+
Sbjct: 554 GEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQVKFIGY 613

Query: 127 IVRHRGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLAGQCQPFQKLMRK 186
            +  +G    Q  ID + +  +PK+  +LR   G + Y+R+FI   +    P   L++K
Sbjct: 614 HISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNNLLKK 672

[Close]

BLAST of Cmc04g0107791 vs. ExPASy TrEMBL
Match: A0A5A7UKT7 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G00750 PE=4 SV=1)

HSP 1 Score: 377.9 bits (969), Expect = 2.5e-101
Identity = 182/190 (95.79%), Postives = 187/190 (98.42%), Query Frame = 0


Query: 1   MVDATTGHEALSFMDGSSGYNQIRMDLSDEEITAFRTPKGIYCYKVIPFGLKNAGATYQR 60
           MVDATTGHEALSFMDGSSGYNQI+MDLSDEE+TAFRT KGIYCYKV+PFGLKN GATYQR
Sbjct: 150 MVDATTGHEALSFMDGSSGYNQIQMDLSDEEMTAFRTSKGIYCYKVMPFGLKNVGATYQR 209

Query: 61  AMQKVFDDMLHKYVECYVDDLVVKSKRRQDHLKDLKVVFDRLRKYQLTMNPLKCAFGVTS 120
           AMQKVFDDMLHKYVECYVDDLVVKSKRRQDHLKDLKV+FDRLRKYQL MNPLKCAFGVTS
Sbjct: 210 AMQKVFDDMLHKYVECYVDDLVVKSKRRQDHLKDLKVMFDRLRKYQLRMNPLKCAFGVTS 269

Query: 121 GKFLGFIVRHRGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLAGQCQPFQ 180
           GKFLGFIVRHRGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLAG+CQPFQ
Sbjct: 270 GKFLGFIVRHRGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLAGRCQPFQ 329

Query: 181 KLMRKGETFV 191
           KLMRKGETFV
Sbjct: 330 KLMRKGETFV 339

[Close]

BLAST of Cmc04g0107791 vs. ExPASy TrEMBL
Match: A0A5A7SPV8 (Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9G00010 PE=4 SV=1)

HSP 1 Score: 377.5 bits (968), Expect = 3.3e-101
Identity = 183/190 (96.32%), Postives = 185/190 (97.37%), Query Frame = 0


Query: 1   MVDATTGHEALSFMDGSSGYNQIRMDLSDEEITAFRTPKGIYCYKVIPFGLKNAGATYQR 60
           MVDATTGHE LSFMDGSSGYNQIRM LSDEE+TAFRTPKGIYCYKVIPFGLKNAGATYQR
Sbjct: 382 MVDATTGHETLSFMDGSSGYNQIRMALSDEEMTAFRTPKGIYCYKVIPFGLKNAGATYQR 441

Query: 61  AMQKVFDDMLHKYVECYVDDLVVKSKRRQDHLKDLKVVFDRLRKYQLTMNPLKCAFGVTS 120
           AMQKVFDDMLHKYVECYVDDLVVKSKRRQDHLKDLKVVFDRLRKYQL MNPLKCAF VTS
Sbjct: 442 AMQKVFDDMLHKYVECYVDDLVVKSKRRQDHLKDLKVVFDRLRKYQLRMNPLKCAFSVTS 501

Query: 121 GKFLGFIVRHRGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLAGQCQPFQ 180
           GKFLGFIVRHRGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLAG+CQPFQ
Sbjct: 502 GKFLGFIVRHRGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLAGRCQPFQ 561

Query: 181 KLMRKGETFV 191
           KLMRKGE FV
Sbjct: 562 KLMRKGENFV 571

[Close]

BLAST of Cmc04g0107791 vs. ExPASy TrEMBL
Match: A0A5A7VKY8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold62G00640 PE=4 SV=1)

HSP 1 Score: 376.7 bits (966), Expect = 5.7e-101
Identity = 182/190 (95.79%), Postives = 186/190 (97.89%), Query Frame = 0


Query: 1   MVDATTGHEALSFMDGSSGYNQIRMDLSDEEITAFRTPKGIYCYKVIPFGLKNAGATYQR 60
           MVDATTGHEALSFMDGSSGYNQIRM LSDEEITAFRTPKGIYCYKV+PFGLKNAGATYQR
Sbjct: 225 MVDATTGHEALSFMDGSSGYNQIRMALSDEEITAFRTPKGIYCYKVMPFGLKNAGATYQR 284

Query: 61  AMQKVFDDMLHKYVECYVDDLVVKSKRRQDHLKDLKVVFDRLRKYQLTMNPLKCAFGVTS 120
           AMQKVFDDMLHKYVECY DDLVVKSKRRQDHLKDLKVVFDRLRKYQL MNPLKCAFGVTS
Sbjct: 285 AMQKVFDDMLHKYVECYADDLVVKSKRRQDHLKDLKVVFDRLRKYQLRMNPLKCAFGVTS 344

Query: 121 GKFLGFIVRHRGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLAGQCQPFQ 180
           GKFLGFIVRHRGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYI+RFISNLAG+CQPFQ
Sbjct: 345 GKFLGFIVRHRGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIQRFISNLAGRCQPFQ 404

Query: 181 KLMRKGETFV 191
           KLMRKGE F+
Sbjct: 405 KLMRKGEKFL 414

[Close]

BLAST of Cmc04g0107791 vs. ExPASy TrEMBL
Match: A0A5D3DZI7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G00050 PE=4 SV=1)

HSP 1 Score: 376.7 bits (966), Expect = 5.7e-101
Identity = 182/190 (95.79%), Postives = 186/190 (97.89%), Query Frame = 0


Query: 1   MVDATTGHEALSFMDGSSGYNQIRMDLSDEEITAFRTPKGIYCYKVIPFGLKNAGATYQR 60
           MVDATTGHEALSFMDGSSGYNQIRM LSDEEITAFRTPKGIYCYKV+PFGLKNAGATYQR
Sbjct: 225 MVDATTGHEALSFMDGSSGYNQIRMALSDEEITAFRTPKGIYCYKVMPFGLKNAGATYQR 284

Query: 61  AMQKVFDDMLHKYVECYVDDLVVKSKRRQDHLKDLKVVFDRLRKYQLTMNPLKCAFGVTS 120
           AMQKVFDDMLHKYVECY DDLVVKSKRRQDHLKDLKVVFDRLRKYQL MNPLKCAFGVTS
Sbjct: 285 AMQKVFDDMLHKYVECYADDLVVKSKRRQDHLKDLKVVFDRLRKYQLRMNPLKCAFGVTS 344

Query: 121 GKFLGFIVRHRGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLAGQCQPFQ 180
           GKFLGFIVRHRGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYI+RFISNLAG+CQPFQ
Sbjct: 345 GKFLGFIVRHRGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIQRFISNLAGRCQPFQ 404

Query: 181 KLMRKGETFV 191
           KLMRKGE F+
Sbjct: 405 KLMRKGEKFL 414

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BLAST of Cmc04g0107791 vs. ExPASy TrEMBL
Match: A0A5D3DYG9 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G001090 PE=4 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 7.4e-101
Identity = 181/190 (95.26%), Postives = 187/190 (98.42%), Query Frame = 0


Query: 1   MVDATTGHEALSFMDGSSGYNQIRMDLSDEEITAFRTPKGIYCYKVIPFGLKNAGATYQR 60
           MVDATTGHEALSFMDGSSGYNQIR+ LSDEE+TAFRTPKGIYCYKV+PFGLKNAGATYQR
Sbjct: 311 MVDATTGHEALSFMDGSSGYNQIRIALSDEEMTAFRTPKGIYCYKVMPFGLKNAGATYQR 370

Query: 61  AMQKVFDDMLHKYVECYVDDLVVKSKRRQDHLKDLKVVFDRLRKYQLTMNPLKCAFGVTS 120
           AMQKVFDDMLHKYVECYVDDLVVKSKRRQDHLKDLKVVFDRLRKYQL MNPLKCAFG+TS
Sbjct: 371 AMQKVFDDMLHKYVECYVDDLVVKSKRRQDHLKDLKVVFDRLRKYQLRMNPLKCAFGLTS 430

Query: 121 GKFLGFIVRHRGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLAGQCQPFQ 180
           GKFLGFIVRHRGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLAG+CQPFQ
Sbjct: 431 GKFLGFIVRHRGIEIDQSKIDAIQKMPRPKSLHDLRSLQGRLAYIRRFISNLAGRCQPFQ 490

Query: 181 KLMRKGETFV 191
           KLMRKGE F+
Sbjct: 491 KLMRKGENFM 500

The following BLAST results are available for this feature:

BLAST of Cmc04g0107791 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0054151.1	5.3e-101	95.79	uncharacterized protein E6C27_scaffold131G00750 [Cucumis melo var. makuwa]	[more]
KAA0033244.1	6.9e-101	96.32	uncharacterized protein E6C27_scaffold845G00390 [Cucumis melo var. makuwa] >TYK1...	[more]
KAA0065979.1	1.2e-100	95.79	uncharacterized protein E6C27_scaffold62G00640 [Cucumis melo var. makuwa]	[more]
TYK28924.1	1.2e-100	95.79	uncharacterized protein E5676_scaffold120G00050 [Cucumis melo var. makuwa]	[more]
TYK28756.1	1.5e-100	95.26	uncharacterized protein E5676_scaffold403G001090 [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0107791 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	4.7e-28	38.37	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P0CT41	2.6e-26	31.28	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	2.6e-26	31.28	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT35	2.6e-26	31.28	Transposon Tf2-2 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]
P0CT36	2.6e-26	31.28	Transposon Tf2-3 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc04g0107791 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UKT7	2.5e-101	95.79	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7SPV8	3.3e-101	96.32	Ribonuclease H OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold9G00010 P...	[more]
A0A5A7VKY8	5.7e-101	95.79	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DZI7	5.7e-101	95.79	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DYG9	7.4e-101	95.26	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of Cmc04g0107791 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 21..53 e-value: 2.2E-39 score: 136.9
None	No IPR available	PANTHER	PTHR24559:SF341	RNA-DIRECTED DNA POLYMERASE HOMOLOG	coord: 1..171
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 1..171
None	No IPR available	CDD	cd01647	RT_LTR	coord: 1..128 e-value: 7.01282E-61 score: 185.492
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 2..128 e-value: 2.2E-39 score: 136.9
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 137..190 e-value: 3.2E-11 score: 45.1
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 4..128 e-value: 7.4E-25 score: 87.8
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 1..128 score: 12.934419
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0107791.1	Cmc04g0107791.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
cellular_component	GO:0030430	host cell cytoplasm
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity