Cmc04g0107021 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0107021
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr04: 25341185 .. 25341784 (+)
RNA-Seq Expression	Cmc04g0107021
Synteny	Cmc04g0107021

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAAGAGGTACTAAAGCTAAAAGATGTCGGAATTATCTACCCTGTCTCGGATAGTACATGGGTAAGTCCAATTCATGTGGTCCCAAAGAAGATCGGGATGACCGTTGTAAAGAACGACAAAGGTGAGATGGTTCCGATGCAAATGCAAAATGGTTGGAGAATGTGCATAGATTACCGGAAACTCAATGAGGTAACAAAAAAGGATCATTTTCCCTTACCTTTTCTTGATCAAATGGTAGAATTCTTAGCGGGTAGATCATATTTTTGTTTCTTAGATGGATCTTCTGGTTTTTACCAAATTCCTATAGCATGTGAAGACCAAAAGAAGACAACTTTTACTTGTGATTATGGAACTTATACATTTAGGTGTATGTCATTTGATCTTTGTAATGCATCGGGCACATTCCAACGTTGCATGATGAGCATATTTTCCGACTTTATTGAAAAATGCATTGAAGTTTTCATGGATGATTTCACAGTTTATGGTGATAGTTTTGATGCATTTTTAGCCAGTCTAGAATTAATTCTAAATAGATGCATAGAAACTAACATTGTCTTGAATTATGAAAAGTGTCATTTCATGGTGTCTCAGGTATAG

mRNA sequence

ATGAAAGAGGTACTAAAGCTAAAAGATGTCGGAATTATCTACCCTGTCTCGGATAGTACATGGGTAAGTCCAATTCATGTGGTCCCAAAGAAGATCGGGATGACCGTTGTAAAGAACGACAAAGGTGAGATGGTTCCGATGCAAATGCAAAATGGTTGGAGAATGTGCATAGATTACCGGAAACTCAATGAGGTAACAAAAAAGGATCATTTTCCCTTACCTTTTCTTGATCAAATGGTAGAATTCTTAGCGGGTAGATCATATTTTTGTTTCTTAGATGGATCTTCTGGTTTTTACCAAATTCCTATAGCATGTGAAGACCAAAAGAAGACAACTTTTACTTGTGATTATGGAACTTATACATTTAGGTGTATGTCATTTGATCTTTGTAATGCATCGGGCACATTCCAACGTTGCATGATGAGCATATTTTCCGACTTTATTGAAAAATGCATTGAAGTTTTCATGGATGATTTCACAGTTTATGGTGATAGTTTTGATGCATTTTTAGCCAGTCTAGAATTAATTCTAAATAGATGCATAGAAACTAACATTGTCTTGAATTATGAAAAGTGTCATTTCATGGTGTCTCAGGTATAG

Coding sequence (CDS)

ATGAAAGAGGTACTAAAGCTAAAAGATGTCGGAATTATCTACCCTGTCTCGGATAGTACATGGGTAAGTCCAATTCATGTGGTCCCAAAGAAGATCGGGATGACCGTTGTAAAGAACGACAAAGGTGAGATGGTTCCGATGCAAATGCAAAATGGTTGGAGAATGTGCATAGATTACCGGAAACTCAATGAGGTAACAAAAAAGGATCATTTTCCCTTACCTTTTCTTGATCAAATGGTAGAATTCTTAGCGGGTAGATCATATTTTTGTTTCTTAGATGGATCTTCTGGTTTTTACCAAATTCCTATAGCATGTGAAGACCAAAAGAAGACAACTTTTACTTGTGATTATGGAACTTATACATTTAGGTGTATGTCATTTGATCTTTGTAATGCATCGGGCACATTCCAACGTTGCATGATGAGCATATTTTCCGACTTTATTGAAAAATGCATTGAAGTTTTCATGGATGATTTCACAGTTTATGGTGATAGTTTTGATGCATTTTTAGCCAGTCTAGAATTAATTCTAAATAGATGCATAGAAACTAACATTGTCTTGAATTATGAAAAGTGTCATTTCATGGTGTCTCAGGTATAG

Protein sequence

MKEVLKLKDVGIIYPVSDSTWVSPIHVVPKKIGMTVVKNDKGEMVPMQMQNGWRMCIDYRKLNEVTKKDHFPLPFLDQMVEFLAGRSYFCFLDGSSGFYQIPIACEDQKKTTFTCDYGTYTFRCMSFDLCNASGTFQRCMMSIFSDFIEKCIEVFMDDFTVYGDSFDAFLASLELILNRCIETNIVLNYEKCHFMVSQV

Homology

[Close]

BLAST of Cmc04g0107021 vs. NCBI nr
Match: XP_031392309.1 (uncharacterized protein LOC116204368 [Punica granatum])

HSP 1 Score: 326.2 bits (835), Expect = 1.9e-85
Identity = 147/197 (74.62%), Postives = 175/197 (88.83%), Query Frame = 0


Query: 1    MKEVLKLKDVGIIYPVSDSTWVSPIHVVPKKIGMTVVKNDKGEMVPMQMQNGWRMCIDYR 60
            MKE+LKL D+GIIYP+SDS WVSPIHVVPKK G+T+VKN++GE+VP ++QNGWR+CIDYR
Sbjct: 951  MKEILKLLDLGIIYPISDSQWVSPIHVVPKKTGLTLVKNERGELVPTRVQNGWRVCIDYR 1010

Query: 61   KLNEVTKKDHFPLPFLDQMVEFLAGRSYFCFLDGSSGFYQIPIACEDQKKTTFTCDYGTY 120
            KLN  T+KDHFPLPF+DQM+E LAG+SYFCFLDG SG+YQI +A EDQ+KTTFTC +GT+
Sbjct: 1011 KLNAATRKDHFPLPFIDQMLERLAGKSYFCFLDGYSGYYQIVVAPEDQEKTTFTCPFGTF 1070

Query: 121  TFRCMSFDLCNASGTFQRCMMSIFSDFIEKCIEVFMDDFTVYGDSFDAFLASLELILNRC 180
             +R M F LC+A GTFQRCMMSIFSD IE CIEVFMDDFTVYGDSFD  LA+L  +L+RC
Sbjct: 1071 AYRRMPFGLCDAPGTFQRCMMSIFSDMIENCIEVFMDDFTVYGDSFDRCLANLSKVLHRC 1130

Query: 181  IETNIVLNYEKCHFMVS 198
            IE+N+VLNYEKCHFMV+
Sbjct: 1131 IESNLVLNYEKCHFMVT 1147

[Close]

BLAST of Cmc04g0107021 vs. NCBI nr
Match: XP_031402684.1 (uncharacterized protein LOC116212259 [Punica granatum])

HSP 1 Score: 324.3 bits (830), Expect = 7.2e-85
Identity = 146/197 (74.11%), Postives = 175/197 (88.83%), Query Frame = 0


Query: 1    MKEVLKLKDVGIIYPVSDSTWVSPIHVVPKKIGMTVVKNDKGEMVPMQMQNGWRMCIDYR 60
            MKE+LKL D+GIIYP+SDS WVSPIHVVPKK G+T+VKN++GE+VP ++QNGWR+CIDYR
Sbjct: 906  MKEILKLLDLGIIYPISDSQWVSPIHVVPKKTGLTLVKNERGELVPTRVQNGWRVCIDYR 965

Query: 61   KLNEVTKKDHFPLPFLDQMVEFLAGRSYFCFLDGSSGFYQIPIACEDQKKTTFTCDYGTY 120
            KLN  T+KDHFPLPF+DQM+E LAG+SYFCFLDG SG+YQI +A EDQ+KTTFTC +GT+
Sbjct: 966  KLNAATRKDHFPLPFIDQMLERLAGKSYFCFLDGYSGYYQIVVAPEDQEKTTFTCPFGTF 1025

Query: 121  TFRCMSFDLCNASGTFQRCMMSIFSDFIEKCIEVFMDDFTVYGDSFDAFLASLELILNRC 180
             +R M F LC+A GTFQRCMMSIFSD IE CIEVFMDDFTV+GDSFD  LA+L  +L+RC
Sbjct: 1026 AYRRMPFGLCDAPGTFQRCMMSIFSDMIENCIEVFMDDFTVHGDSFDRCLANLSKVLHRC 1085

Query: 181  IETNIVLNYEKCHFMVS 198
            IE+N+VLNYEKCHFMV+
Sbjct: 1086 IESNLVLNYEKCHFMVT 1102

[Close]

BLAST of Cmc04g0107021 vs. NCBI nr
Match: XP_031393661.1 (uncharacterized protein LOC116205261 [Punica granatum])

HSP 1 Score: 324.3 bits (830), Expect = 7.2e-85
Identity = 146/197 (74.11%), Postives = 175/197 (88.83%), Query Frame = 0


Query: 1    MKEVLKLKDVGIIYPVSDSTWVSPIHVVPKKIGMTVVKNDKGEMVPMQMQNGWRMCIDYR 60
            MKE+LKL D+GIIYP+SDS WVSPIHVVPKK G+T+VKN++GE+VP ++QNGWR+CIDYR
Sbjct: 906  MKEILKLLDLGIIYPISDSQWVSPIHVVPKKTGLTLVKNERGELVPTRVQNGWRVCIDYR 965

Query: 61   KLNEVTKKDHFPLPFLDQMVEFLAGRSYFCFLDGSSGFYQIPIACEDQKKTTFTCDYGTY 120
            KLN  T+KDHFPLPF+DQM+E LAG+SYFCFLDG SG+YQI +A EDQ+KTTFTC +GT+
Sbjct: 966  KLNAATRKDHFPLPFIDQMLERLAGKSYFCFLDGYSGYYQIVVAPEDQEKTTFTCPFGTF 1025

Query: 121  TFRCMSFDLCNASGTFQRCMMSIFSDFIEKCIEVFMDDFTVYGDSFDAFLASLELILNRC 180
             +R M F LC+A GTFQRCMMSIFSD IE CIEVFMDDFTV+GDSFD  LA+L  +L+RC
Sbjct: 1026 AYRRMPFGLCDAPGTFQRCMMSIFSDMIENCIEVFMDDFTVHGDSFDRCLANLSKVLHRC 1085

Query: 181  IETNIVLNYEKCHFMVS 198
            IE+N+VLNYEKCHFMV+
Sbjct: 1086 IESNLVLNYEKCHFMVT 1102

[Close]

BLAST of Cmc04g0107021 vs. NCBI nr
Match: XP_031392147.1 (uncharacterized protein LOC116204210 [Punica granatum])

HSP 1 Score: 324.3 bits (830), Expect = 7.2e-85
Identity = 146/197 (74.11%), Postives = 175/197 (88.83%), Query Frame = 0


Query: 1    MKEVLKLKDVGIIYPVSDSTWVSPIHVVPKKIGMTVVKNDKGEMVPMQMQNGWRMCIDYR 60
            MKE+LKL D+GIIYP+SDS WVSPIHVVPKK G+T+VKN++GE+VP ++QNGWR+CIDYR
Sbjct: 906  MKEILKLLDLGIIYPISDSQWVSPIHVVPKKTGLTLVKNERGELVPTRVQNGWRVCIDYR 965

Query: 61   KLNEVTKKDHFPLPFLDQMVEFLAGRSYFCFLDGSSGFYQIPIACEDQKKTTFTCDYGTY 120
            KLN  T+KDHFPLPF+DQM+E LAG+SYFCFLDG SG+YQI +A EDQ+KTTFTC +GT+
Sbjct: 966  KLNAATRKDHFPLPFIDQMLERLAGKSYFCFLDGYSGYYQIVVAPEDQEKTTFTCPFGTF 1025

Query: 121  TFRCMSFDLCNASGTFQRCMMSIFSDFIEKCIEVFMDDFTVYGDSFDAFLASLELILNRC 180
             +R M F LC+A GTFQRCMMSIFSD IE CIEVFMDDFTV+GDSFD  LA+L  +L+RC
Sbjct: 1026 AYRRMPFGLCDAPGTFQRCMMSIFSDMIENCIEVFMDDFTVHGDSFDRCLANLSKVLHRC 1085

Query: 181  IETNIVLNYEKCHFMVS 198
            IE+N+VLNYEKCHFMV+
Sbjct: 1086 IESNLVLNYEKCHFMVT 1102

[Close]

BLAST of Cmc04g0107021 vs. NCBI nr
Match: XP_031400978.1 (uncharacterized protein LOC116210952 [Punica granatum])

HSP 1 Score: 322.0 bits (824), Expect = 3.6e-84
Identity = 145/197 (73.60%), Postives = 174/197 (88.32%), Query Frame = 0


Query: 1    MKEVLKLKDVGIIYPVSDSTWVSPIHVVPKKIGMTVVKNDKGEMVPMQMQNGWRMCIDYR 60
            MKE+LKL D+GIIYP+SDS WVSPIHVVPKK G+T+VKN++GE+VP ++QNGWR+CIDYR
Sbjct: 1083 MKEILKLLDLGIIYPISDSQWVSPIHVVPKKTGLTLVKNERGELVPTRVQNGWRVCIDYR 1142

Query: 61   KLNEVTKKDHFPLPFLDQMVEFLAGRSYFCFLDGSSGFYQIPIACEDQKKTTFTCDYGTY 120
            KLN  T+KDHFPLPF+DQM+E LA +SYFCFLDG SG+YQI +A EDQ+KTTFTC +GT+
Sbjct: 1143 KLNAATRKDHFPLPFIDQMLERLASKSYFCFLDGYSGYYQIVVAPEDQEKTTFTCPFGTF 1202

Query: 121  TFRCMSFDLCNASGTFQRCMMSIFSDFIEKCIEVFMDDFTVYGDSFDAFLASLELILNRC 180
             +R M F LC+A GTFQRCMMSIFSD IE CIEVFMDDFTV+GDSFD  LA+L  +L+RC
Sbjct: 1203 AYRRMPFGLCDAPGTFQRCMMSIFSDMIENCIEVFMDDFTVHGDSFDRCLANLSKVLHRC 1262

Query: 181  IETNIVLNYEKCHFMVS 198
            IE+N+VLNYEKCHFMV+
Sbjct: 1263 IESNLVLNYEKCHFMVT 1279

[Close]

BLAST of Cmc04g0107021 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.3e-25
Identity = 68/183 (37.16%), Postives = 99/183 (54.10%), Query Frame = 0


Query: 13  IYPVSDSTWVSPIHVVPKKIGMTVVKNDKGEMVPMQMQNGWRMCIDYRKLNEVTKKDHFP 72
           I   S+S + SPI VVPKK      ++  G       +  +R+ IDYRKLNE+T  D  P
Sbjct: 235 IIRTSNSPYNSPIWVVPKK------QDASG-------KQKFRIVIDYRKLNEITVGDRHP 294

Query: 73  LPFLDQMVEFLAGRSYFCFLDGSSGFYQIPIACEDQKKTTFTCDYGTYTFRCMSFDLCNA 132
           +P +D+++  L   +YF  +D + GF+QI +  E   KT F+  +G Y +  M F L NA
Sbjct: 295 IPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKNA 354

Query: 133 SGTFQRCMMSIFSDFIEKCIEVFMDDFTVYGDSFDAFLASLELILNRCIETNIVLNYEKC 192
             TFQRCM  I    + K   V++DD  V+  S D  L SL L+  +  + N+ L  +KC
Sbjct: 355 PATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKC 404

Query: 193 HFM 196
            F+
Sbjct: 415 EFL 404

[Close]

BLAST of Cmc04g0107021 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.5e-24
Identity = 66/193 (34.20%), Postives = 103/193 (53.37%), Query Frame = 0


Query: 3   EVLKLKDVGIIYPVSDSTWVSPIHVVPKKIGMTVVKNDKGEMVPMQMQNGWRMCIDYRKL 62
           +V ++ + G+I   S+S + SP  VVPKK   +               N +R+ IDYRKL
Sbjct: 225 QVQEMLNQGLIRE-SNSPYNSPTWVVPKKPDASGA-------------NKYRVVIDYRKL 284

Query: 63  NEVTKKDHFPLPFLDQMVEFLAGRSYFCFLDGSSGFYQIPIACEDQKKTTFTCDYGTYTF 122
           NE+T  D +P+P +D+++  L    YF  +D + GF+QI +  E   KT F+   G Y +
Sbjct: 285 NEITIPDRYPIPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEY 344

Query: 123 RCMSFDLCNASGTFQRCMMSIFSDFIEKCIEVFMDDFTVYGDSFDAFLASLELILNRCIE 182
             M F L NA  TFQRCM +I    + K   V++DD  ++  S    L S++L+  +  +
Sbjct: 345 LRMPFGLRNAPATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLAD 403

Query: 183 TNIVLNYEKCHFM 196
            N+ L  +KC F+
Sbjct: 405 ANLKLQLDKCEFL 403

[Close]

BLAST of Cmc04g0107021 vs. ExPASy Swiss-Prot
Match: Q8I7P9 (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 9.7e-24
Identity = 69/198 (34.85%), Postives = 105/198 (53.03%), Query Frame = 0


Query: 2   KEVLKLKDVGIIYPVSDSTWVSPIHVVPKKIGMTVVKNDKGEMVPMQMQNGWRMCIDYRK 61
           +++ +L   GII P S+S + SPI +VPKK          GE         +RM +D+++
Sbjct: 141 RQIDELLQDGIIRP-SNSPYNSPIWIVPKK------PKPNGE-------KQYRMVVDFKR 200

Query: 62  LNEVTKKDHFPLPFLDQMVEFLAGRSYFCFLDGSSGFYQIPIACEDQKKTTFTCDYGTYT 121
           LN VT  D +P+P ++  +  L    YF  LD +SGF+QI +   D  KT F+   G Y 
Sbjct: 201 LNTVTIPDTYPIPDINATLASLGNAKYFTTLDLTSGFHQIHMKESDIPKTAFSTLNGKYE 260

Query: 122 FRCMSFDLCNASGTFQRCMMSIFSDFIEKCIEVFMDDFTVYGDSFDAFLASLELILNRCI 181
           F  + F L NA   FQR +  I  + I K   V++DD  V+ + +D    +L L+L    
Sbjct: 261 FLRLPFGLKNAPAIFQRMIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLS 320

Query: 182 ETNIVLNYEKCHFMVSQV 200
           + N+ +N EK HF+ +QV
Sbjct: 321 KANLQVNLEKSHFLDTQV 324

[Close]

BLAST of Cmc04g0107021 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 109.8 bits (273), Expect = 3.7e-23
Identity = 66/193 (34.20%), Postives = 96/193 (49.74%), Query Frame = 0


Query: 2   KEVLKLKDVGIIYPVSDSTWVSPIHVVPKKIGMTVVKNDKGEMVPMQMQNGWRMCIDYRK 61
           K V KL D   I P S S   SP+ +VPKK G                   +R+C+DYR 
Sbjct: 614 KIVQKLLDNKFIVP-SKSPCSSPVVLVPKKDGT------------------FRLCVDYRT 673

Query: 62  LNEVTKKDHFPLPFLDQMVEFLAGRSYFCFLDGSSGFYQIPIACEDQKKTTFTCDYGTYT 121
           LN+ T  D FPLP +D ++  +     F  LD  SG++QIP+  +D+ KT F    G Y 
Sbjct: 674 LNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYE 733

Query: 122 FRCMSFDLCNASGTFQRCMMSIFSDFIEKCIEVFMDDFTVYGDSFDAFLASLELILNRCI 181
           +  M F L NA  TF R M   F D   + + V++DD  ++ +S +     L+ +L R  
Sbjct: 734 YTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLK 785

Query: 182 ETNIVLNYEKCHF 195
             N+++  +KC F
Sbjct: 794 NENLIVKKKKCKF 785

[Close]

BLAST of Cmc04g0107021 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 109.8 bits (273), Expect = 3.7e-23
Identity = 66/193 (34.20%), Postives = 96/193 (49.74%), Query Frame = 0


Query: 2   KEVLKLKDVGIIYPVSDSTWVSPIHVVPKKIGMTVVKNDKGEMVPMQMQNGWRMCIDYRK 61
           K V KL D   I P S S   SP+ +VPKK G                   +R+C+DYR 
Sbjct: 640 KIVQKLLDNKFIVP-SKSPCSSPVVLVPKKDGT------------------FRLCVDYRT 699

Query: 62  LNEVTKKDHFPLPFLDQMVEFLAGRSYFCFLDGSSGFYQIPIACEDQKKTTFTCDYGTYT 121
           LN+ T  D FPLP +D ++  +     F  LD  SG++QIP+  +D+ KT F    G Y 
Sbjct: 700 LNKATISDPFPLPRIDNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYE 759

Query: 122 FRCMSFDLCNASGTFQRCMMSIFSDFIEKCIEVFMDDFTVYGDSFDAFLASLELILNRCI 181
           +  M F L NA  TF R M   F D   + + V++DD  ++ +S +     L+ +L R  
Sbjct: 760 YTVMPFGLVNAPSTFARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLK 811

Query: 182 ETNIVLNYEKCHF 195
             N+++  +KC F
Sbjct: 820 NENLIVKKKKCKF 811

[Close]

BLAST of Cmc04g0107021 vs. ExPASy TrEMBL
Match: A0A6P8DCT8 (Reverse transcriptase OS=Punica granatum OX=22663 GN=LOC116204368 PE=4 SV=1)

HSP 1 Score: 326.2 bits (835), Expect = 9.2e-86
Identity = 147/197 (74.62%), Postives = 175/197 (88.83%), Query Frame = 0


Query: 1    MKEVLKLKDVGIIYPVSDSTWVSPIHVVPKKIGMTVVKNDKGEMVPMQMQNGWRMCIDYR 60
            MKE+LKL D+GIIYP+SDS WVSPIHVVPKK G+T+VKN++GE+VP ++QNGWR+CIDYR
Sbjct: 951  MKEILKLLDLGIIYPISDSQWVSPIHVVPKKTGLTLVKNERGELVPTRVQNGWRVCIDYR 1010

Query: 61   KLNEVTKKDHFPLPFLDQMVEFLAGRSYFCFLDGSSGFYQIPIACEDQKKTTFTCDYGTY 120
            KLN  T+KDHFPLPF+DQM+E LAG+SYFCFLDG SG+YQI +A EDQ+KTTFTC +GT+
Sbjct: 1011 KLNAATRKDHFPLPFIDQMLERLAGKSYFCFLDGYSGYYQIVVAPEDQEKTTFTCPFGTF 1070

Query: 121  TFRCMSFDLCNASGTFQRCMMSIFSDFIEKCIEVFMDDFTVYGDSFDAFLASLELILNRC 180
             +R M F LC+A GTFQRCMMSIFSD IE CIEVFMDDFTVYGDSFD  LA+L  +L+RC
Sbjct: 1071 AYRRMPFGLCDAPGTFQRCMMSIFSDMIENCIEVFMDDFTVYGDSFDRCLANLSKVLHRC 1130

Query: 181  IETNIVLNYEKCHFMVS 198
            IE+N+VLNYEKCHFMV+
Sbjct: 1131 IESNLVLNYEKCHFMVT 1147

[Close]

BLAST of Cmc04g0107021 vs. ExPASy TrEMBL
Match: A0A6P8DJV3 (Reverse transcriptase OS=Punica granatum OX=22663 GN=LOC116205261 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 3.5e-85
Identity = 146/197 (74.11%), Postives = 175/197 (88.83%), Query Frame = 0


Query: 1    MKEVLKLKDVGIIYPVSDSTWVSPIHVVPKKIGMTVVKNDKGEMVPMQMQNGWRMCIDYR 60
            MKE+LKL D+GIIYP+SDS WVSPIHVVPKK G+T+VKN++GE+VP ++QNGWR+CIDYR
Sbjct: 906  MKEILKLLDLGIIYPISDSQWVSPIHVVPKKTGLTLVKNERGELVPTRVQNGWRVCIDYR 965

Query: 61   KLNEVTKKDHFPLPFLDQMVEFLAGRSYFCFLDGSSGFYQIPIACEDQKKTTFTCDYGTY 120
            KLN  T+KDHFPLPF+DQM+E LAG+SYFCFLDG SG+YQI +A EDQ+KTTFTC +GT+
Sbjct: 966  KLNAATRKDHFPLPFIDQMLERLAGKSYFCFLDGYSGYYQIVVAPEDQEKTTFTCPFGTF 1025

Query: 121  TFRCMSFDLCNASGTFQRCMMSIFSDFIEKCIEVFMDDFTVYGDSFDAFLASLELILNRC 180
             +R M F LC+A GTFQRCMMSIFSD IE CIEVFMDDFTV+GDSFD  LA+L  +L+RC
Sbjct: 1026 AYRRMPFGLCDAPGTFQRCMMSIFSDMIENCIEVFMDDFTVHGDSFDRCLANLSKVLHRC 1085

Query: 181  IETNIVLNYEKCHFMVS 198
            IE+N+VLNYEKCHFMV+
Sbjct: 1086 IESNLVLNYEKCHFMVT 1102

[Close]

BLAST of Cmc04g0107021 vs. ExPASy TrEMBL
Match: A0A6P8D4X0 (Reverse transcriptase OS=Punica granatum OX=22663 GN=LOC116204210 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 3.5e-85
Identity = 146/197 (74.11%), Postives = 175/197 (88.83%), Query Frame = 0


Query: 1    MKEVLKLKDVGIIYPVSDSTWVSPIHVVPKKIGMTVVKNDKGEMVPMQMQNGWRMCIDYR 60
            MKE+LKL D+GIIYP+SDS WVSPIHVVPKK G+T+VKN++GE+VP ++QNGWR+CIDYR
Sbjct: 906  MKEILKLLDLGIIYPISDSQWVSPIHVVPKKTGLTLVKNERGELVPTRVQNGWRVCIDYR 965

Query: 61   KLNEVTKKDHFPLPFLDQMVEFLAGRSYFCFLDGSSGFYQIPIACEDQKKTTFTCDYGTY 120
            KLN  T+KDHFPLPF+DQM+E LAG+SYFCFLDG SG+YQI +A EDQ+KTTFTC +GT+
Sbjct: 966  KLNAATRKDHFPLPFIDQMLERLAGKSYFCFLDGYSGYYQIVVAPEDQEKTTFTCPFGTF 1025

Query: 121  TFRCMSFDLCNASGTFQRCMMSIFSDFIEKCIEVFMDDFTVYGDSFDAFLASLELILNRC 180
             +R M F LC+A GTFQRCMMSIFSD IE CIEVFMDDFTV+GDSFD  LA+L  +L+RC
Sbjct: 1026 AYRRMPFGLCDAPGTFQRCMMSIFSDMIENCIEVFMDDFTVHGDSFDRCLANLSKVLHRC 1085

Query: 181  IETNIVLNYEKCHFMVS 198
            IE+N+VLNYEKCHFMV+
Sbjct: 1086 IESNLVLNYEKCHFMVT 1102

[Close]

BLAST of Cmc04g0107021 vs. ExPASy TrEMBL
Match: A0A6P8E830 (Reverse transcriptase OS=Punica granatum OX=22663 GN=LOC116212259 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 3.5e-85
Identity = 146/197 (74.11%), Postives = 175/197 (88.83%), Query Frame = 0


Query: 1    MKEVLKLKDVGIIYPVSDSTWVSPIHVVPKKIGMTVVKNDKGEMVPMQMQNGWRMCIDYR 60
            MKE+LKL D+GIIYP+SDS WVSPIHVVPKK G+T+VKN++GE+VP ++QNGWR+CIDYR
Sbjct: 906  MKEILKLLDLGIIYPISDSQWVSPIHVVPKKTGLTLVKNERGELVPTRVQNGWRVCIDYR 965

Query: 61   KLNEVTKKDHFPLPFLDQMVEFLAGRSYFCFLDGSSGFYQIPIACEDQKKTTFTCDYGTY 120
            KLN  T+KDHFPLPF+DQM+E LAG+SYFCFLDG SG+YQI +A EDQ+KTTFTC +GT+
Sbjct: 966  KLNAATRKDHFPLPFIDQMLERLAGKSYFCFLDGYSGYYQIVVAPEDQEKTTFTCPFGTF 1025

Query: 121  TFRCMSFDLCNASGTFQRCMMSIFSDFIEKCIEVFMDDFTVYGDSFDAFLASLELILNRC 180
             +R M F LC+A GTFQRCMMSIFSD IE CIEVFMDDFTV+GDSFD  LA+L  +L+RC
Sbjct: 1026 AYRRMPFGLCDAPGTFQRCMMSIFSDMIENCIEVFMDDFTVHGDSFDRCLANLSKVLHRC 1085

Query: 181  IETNIVLNYEKCHFMVS 198
            IE+N+VLNYEKCHFMV+
Sbjct: 1086 IESNLVLNYEKCHFMVT 1102

[Close]

BLAST of Cmc04g0107021 vs. ExPASy TrEMBL
Match: A0A6P8E7C5 (Reverse transcriptase OS=Punica granatum OX=22663 GN=LOC116210952 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 1.7e-84
Identity = 145/197 (73.60%), Postives = 174/197 (88.32%), Query Frame = 0


Query: 1    MKEVLKLKDVGIIYPVSDSTWVSPIHVVPKKIGMTVVKNDKGEMVPMQMQNGWRMCIDYR 60
            MKE+LKL D+GIIYP+SDS WVSPIHVVPKK G+T+VKN++GE+VP ++QNGWR+CIDYR
Sbjct: 1083 MKEILKLLDLGIIYPISDSQWVSPIHVVPKKTGLTLVKNERGELVPTRVQNGWRVCIDYR 1142

Query: 61   KLNEVTKKDHFPLPFLDQMVEFLAGRSYFCFLDGSSGFYQIPIACEDQKKTTFTCDYGTY 120
            KLN  T+KDHFPLPF+DQM+E LA +SYFCFLDG SG+YQI +A EDQ+KTTFTC +GT+
Sbjct: 1143 KLNAATRKDHFPLPFIDQMLERLASKSYFCFLDGYSGYYQIVVAPEDQEKTTFTCPFGTF 1202

Query: 121  TFRCMSFDLCNASGTFQRCMMSIFSDFIEKCIEVFMDDFTVYGDSFDAFLASLELILNRC 180
             +R M F LC+A GTFQRCMMSIFSD IE CIEVFMDDFTV+GDSFD  LA+L  +L+RC
Sbjct: 1203 AYRRMPFGLCDAPGTFQRCMMSIFSDMIENCIEVFMDDFTVHGDSFDRCLANLSKVLHRC 1262

Query: 181  IETNIVLNYEKCHFMVS 198
            IE+N+VLNYEKCHFMV+
Sbjct: 1263 IESNLVLNYEKCHFMVT 1279

The following BLAST results are available for this feature:

BLAST of Cmc04g0107021 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031392309.1	1.9e-85	74.62	uncharacterized protein LOC116204368 [Punica granatum]	[more]
XP_031402684.1	7.2e-85	74.11	uncharacterized protein LOC116212259 [Punica granatum]	[more]
XP_031393661.1	7.2e-85	74.11	uncharacterized protein LOC116205261 [Punica granatum]	[more]
XP_031392147.1	7.2e-85	74.11	uncharacterized protein LOC116204210 [Punica granatum]	[more]
XP_031400978.1	3.6e-84	73.60	uncharacterized protein LOC116210952 [Punica granatum]	[more]

BLAST of Cmc04g0107021 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	1.3e-25	37.16	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	1.5e-24	34.20	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q8I7P9	9.7e-24	34.85	Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast...	[more]
Q99315	3.7e-23	34.20	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q7LHG5	3.7e-23	34.20	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc04g0107021 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P8DCT8	9.2e-86	74.62	Reverse transcriptase OS=Punica granatum OX=22663 GN=LOC116204368 PE=4 SV=1	[more]
A0A6P8DJV3	3.5e-85	74.11	Reverse transcriptase OS=Punica granatum OX=22663 GN=LOC116205261 PE=4 SV=1	[more]
A0A6P8D4X0	3.5e-85	74.11	Reverse transcriptase OS=Punica granatum OX=22663 GN=LOC116204210 PE=4 SV=1	[more]
A0A6P8E830	3.5e-85	74.11	Reverse transcriptase OS=Punica granatum OX=22663 GN=LOC116212259 PE=4 SV=1	[more]
A0A6P8E7C5	1.7e-84	73.60	Reverse transcriptase OS=Punica granatum OX=22663 GN=LOC116210952 PE=4 SV=1	[more]

BLAST of Cmc04g0107021 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 71..199 e-value: 3.7E-51 score: 175.4
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 3..131 e-value: 3.7E-51 score: 175.4
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 7..199
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 7..199
None	No IPR available	CDD	cd01647	RT_LTR	coord: 11..199 e-value: 1.5332E-69 score: 207.833
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 50..196 e-value: 3.4E-18 score: 66.0
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0107021.1	Cmc04g0107021.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006468	protein phosphorylation
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004672	protein kinase activity