Cmc04g0105601 (gene) Melon (Charmono) v1.1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCAAGCTTTTGTATTAGTTAGTAATGGGTGTCTTTATCTATTTGAGCTAAAGTTTGCAATTTGATGTTTGAATACTTTGTTGGGATATTTGTAGATGTAAATGAGTCCAAAAAGACCACCGAAAAATCCTCACAAGAAACTTCCAAAATTTGCTTATTCCTGACTTTATTTTTGTCTACACATAACAAGAAAAGTTTATCCATTCCTTCTTCCCAATTTATTAAAATTCCCCATTCCTTAGATTGAAACTATCCCCACAAAAATATCTCCCAACCTCCATTTTCTTCTATACTCGCGGCCCATTTCCATGGCAGCCCTCTCCGCCGGCCACCGCCATTTCTTCTACAGCCTAAGCGGCAGCGCCATCGTGCAGTTTAGAAACAGAAGCATCAGCCCCAGATCGATCGCCGTCCTCTGCCTCCATAACCAAGATCCTTCAGATCCTACAGATTGTTCTGATGAAAAAACGAAGAAGAAAAGCCAAGAAAGAAAAGAGATGGTTCATGGGTTTGTCCAAAGATTCGAGAAGATGGGAATTCAATTGAAGGAGAAATTGAGTCCACAGAGAAAAGGGGATTGGAAGGATTTGACATTGATGAGCCTTTCATTTGCTGTTTATGTATATATATCTCAGAAGATTGTTTGTGCTTATTTTCTTTGGATGTCAATGCCTAAACCACTGTGGTAGAAGATCATGTATTTCAAAGAATCTCTCTCTGTTGTTCTATATTTGGAGATTGAAATTTGTGTAATTCCAATGTAATTTGATTTCTTATTTGTTGAATATATAGATGCAATCAAATCGTAATTGTAGAAGTTCTTCTTGTTAATTGTTGCAGCAACGTAACTTGTCGCAATATTTAAGATCAAGATAGATCAAACATTTATCACCGGCAAATTCAGGATGGTAC TCAAGCTTTTGTATTAGTTAGTAATGGGTGTCTTTATCTATTTGAGCTAAAGTTTGCAATTTGATGTTTGAATACTTTGTTGGGATATTTGTAGATGTAAATGAGTCCAAAAAGACCACCGAAAAATCCTCACAAGAAACTTCCAAAATTTGCTTATTCCTGACTTTATTTTTGTCTACACATAACAAGAAAAGTTTATCCATTCCTTCTTCCCAATTTATTAAAATTCCCCATTCCTTAGATTGAAACTATCCCCACAAAAATATCTCCCAACCTCCATTTTCTTCTATACTCGCGGCCCATTTCCATGGCAGCCCTCTCCGCCGGCCACCGCCATTTCTTCTACAGCCTAAGCGGCAGCGCCATCGTGCAGTTTAGAAACAGAAGCATCAGCCCCAGATCGATCGCCGTCCTCTGCCTCCATAACCAAGATCCTTCAGATCCTACAGATTGTTCTGATGAAAAAACGAAGAAGAAAAGCCAAGAAAGAAAAGAGATGGTTCATGGGTTTGTCCAAAGATTCGAGAAGATGGGAATTCAATTGAAGGAGAAATTGAGTCCACAGAGAAAAGGGGATTGGAAGGATTTGACATTGATGAGCCTTTCATTTGCTGTTTATGTATATATATCTCAGAAGATTGTTTGTGCTTATTTTCTTTGGATGTCAATGCCTAAACCACTGTGGTAGAAGATCATGTATTTCAAAGAATCTCTCTCTGTTGTTCTATATTTGGAGATTGAAATTTGTGTAATTCCAATGTAATTTGATTTCTTATTTGTTGAATATATAGATGCAATCAAATCGTAATTGTAGAAGTTCTTCTTGTTAATTGTTGCAGCAACGTAACTTGTCGCAATATTTAAGATCAAGATAGATCAAACATTTATCACCGGCAAATTCAGGATGGTAC ATGGCAGCCCTCTCCGCCGGCCACCGCCATTTCTTCTACAGCCTAAGCGGCAGCGCCATCGTGCAGTTTAGAAACAGAAGCATCAGCCCCAGATCGATCGCCGTCCTCTGCCTCCATAACCAAGATCCTTCAGATCCTACAGATTGTTCTGATGAAAAAACGAAGAAGAAAAGCCAAGAAAGAAAAGAGATGGTTCATGGGTTTGTCCAAAGATTCGAGAAGATGGGAATTCAATTGAAGGAGAAATTGAGTCCACAGAGAAAAGGGGATTGGAAGGATTTGACATTGATGAGCCTTTCATTTGCTGTTTATGTATATATATCTCAGAAGATTGTTTGTGCTTATTTTCTTTGGATGTCAATGCCTAAACCACTGTGGTAG MAALSAGHRHFFYSLSGSAIVQFRNRSISPRSIAVLCLHNQDPSDPTDCSDEKTKKKSQERKEMVHGFVQRFEKMGIQLKEKLSPQRKGDWKDLTLMSLSFAVYVYISQKIVCAYFLWMSMPKPLW Homology
BLAST of Cmc04g0105601 vs. NCBI nr
Match: KAA0048367.1 (putative RNA/RNP complex-1-interacting phosphatase [Cucumis melo var. makuwa] >TYK04067.1 putative RNA/RNP complex-1-interacting phosphatase [Cucumis melo var. makuwa]) HSP 1 Score: 254.6 bits (649), Expect = 4.5e-64 Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0
BLAST of Cmc04g0105601 vs. NCBI nr
Match: KGN58582.1 (hypothetical protein Csa_001602 [Cucumis sativus]) HSP 1 Score: 242.7 bits (618), Expect = 1.8e-60 Identity = 119/126 (94.44%), Postives = 123/126 (97.62%), Query Frame = 0
BLAST of Cmc04g0105601 vs. NCBI nr
Match: KAG6606884.1 (hypothetical protein SDJN03_00226, partial [Cucurbita argyrosperma subsp. sororia] >KAG7036590.1 hypothetical protein SDJN02_00209, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 198.0 bits (502), Expect = 4.9e-47 Identity = 101/126 (80.16%), Postives = 113/126 (89.68%), Query Frame = 0
BLAST of Cmc04g0105601 vs. NCBI nr
Match: KAG6581569.1 (hypothetical protein SDJN03_21571, partial [Cucurbita argyrosperma subsp. sororia] >KAG7018076.1 hypothetical protein SDJN02_19942, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 179.5 bits (454), Expect = 1.8e-41 Identity = 94/126 (74.60%), Postives = 105/126 (83.33%), Query Frame = 0
BLAST of Cmc04g0105601 vs. NCBI nr
Match: XP_022152649.1 (uncharacterized protein LOC111020315 [Momordica charantia]) HSP 1 Score: 159.5 bits (402), Expect = 2.0e-35 Identity = 83/127 (65.35%), Postives = 100/127 (78.74%), Query Frame = 0
BLAST of Cmc04g0105601 vs. ExPASy TrEMBL
Match: A0A5D3BX35 (Putative RNA/RNP complex-1-interacting phosphatase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1871G00020 PE=4 SV=1) HSP 1 Score: 254.6 bits (649), Expect = 2.2e-64 Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0
BLAST of Cmc04g0105601 vs. ExPASy TrEMBL
Match: A0A0A0LD14 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G690300 PE=4 SV=1) HSP 1 Score: 242.7 bits (618), Expect = 8.5e-61 Identity = 119/126 (94.44%), Postives = 123/126 (97.62%), Query Frame = 0
BLAST of Cmc04g0105601 vs. ExPASy TrEMBL
Match: A0A6J1DGN1 (uncharacterized protein LOC111020315 OS=Momordica charantia OX=3673 GN=LOC111020315 PE=4 SV=1) HSP 1 Score: 159.5 bits (402), Expect = 9.4e-36 Identity = 83/127 (65.35%), Postives = 100/127 (78.74%), Query Frame = 0
BLAST of Cmc04g0105601 vs. ExPASy TrEMBL
Match: A0A7J9DSK9 (Uncharacterized protein OS=Gossypium trilobum OX=34281 GN=Gotri_013044 PE=4 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 2.0e-22 Identity = 66/128 (51.56%), Postives = 84/128 (65.62%), Query Frame = 0
BLAST of Cmc04g0105601 vs. ExPASy TrEMBL
Match: A0A0D2S197 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_004G171400 PE=4 SV=1) HSP 1 Score: 114.8 bits (286), Expect = 2.7e-22 Identity = 66/128 (51.56%), Postives = 84/128 (65.62%), Query Frame = 0
BLAST of Cmc04g0105601 vs. TAIR 10
Match: AT3G52070.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 61.6 bits (148), Expect = 5.2e-10 Identity = 35/77 (45.45%), Postives = 50/77 (64.94%), Query Frame = 0
BLAST of Cmc04g0105601 vs. TAIR 10
Match: AT3G52070.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 23 Blast hits to 23 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 58.9 bits (141), Expect = 3.3e-09 Identity = 34/74 (45.95%), Postives = 49/74 (66.22%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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