Cmc04g0105431 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0105431
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty1-copia retrotransposon protein
Location	CMiso1.1chr04: 23527583 .. 23528191 (+)
RNA-Seq Expression	Cmc04g0105431
Synteny	Cmc04g0105431

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATGATCTTGAAAATCCCTCAATCATTAGTGAAACACCTGTTTTTGAAACTGTTAATACTTCGAACTTAAGATGTGAATTAGAACTTAGGAGAAGTAAAAGACAGAGAACTGAGAAAAGTTTCGATCCAAATTTCCTAACCACCTTCATAGTGGAAAGGCGCGATGAAATTGACTGTAACTTCACAAACTTGTTTTTAATAGATGAGGATCCTAAAACTTACCAAGAAGCCCTGAACTCTGTAGAGTCAAGTATGTGGAAAGATGCTATTAAAAGTGAACTGGATTCACTGGTCATGAATCAAACATGGGACTTAGTGGACCTTCCCATGGGAAGCAAGCCAATTAAGTGTAAGTGGATCTTCAAAAGAAAAACAAAACCAAATGGGTCAATAGAAAGATACAAGATTAGATTAGTGGTAGTAGGATATACCCAGAAACAAGGCATTGATTACTTTGACACATATTCCTCTGTAACTAAGATAACTACAATTAGGGTCTTGATTGCATTAGTTGCCATACATAGCCTTCTTATTCACCAAATAGACGTAAAAACTGTCTTTCTAAATGGTGACTTAGAAGAAGAAATTTATATGACACAACCATAA

mRNA sequence

ATGCATGATCTTGAAAATCCCTCAATCATTAGTGAAACACCTGTTTTTGAAACTGTTAATACTTCGAACTTAAGATGTGAATTAGAACTTAGGAGAAGTAAAAGACAGAGAACTGAGAAAAGTTTCGATCCAAATTTCCTAACCACCTTCATAGTGGAAAGGCGCGATGAAATTGACTGTAACTTCACAAACTTGTTTTTAATAGATGAGGATCCTAAAACTTACCAAGAAGCCCTGAACTCTGTAGAGTCAAGTATGTGGAAAGATGCTATTAAAAGTGAACTGGATTCACTGGTCATGAATCAAACATGGGACTTAGTGGACCTTCCCATGGGAAGCAAGCCAATTAAGTGTAAGTGGATCTTCAAAAGAAAAACAAAACCAAATGGGTCAATAGAAAGATACAAGATTAGATTAGTGGTAGTAGGATATACCCAGAAACAAGGCATTGATTACTTTGACACATATTCCTCTGTAACTAAGATAACTACAATTAGGGTCTTGATTGCATTAGTTGCCATACATAGCCTTCTTATTCACCAAATAGACGTAAAAACTGTCTTTCTAAATGGTGACTTAGAAGAAGAAATTTATATGACACAACCATAA

Coding sequence (CDS)

ATGCATGATCTTGAAAATCCCTCAATCATTAGTGAAACACCTGTTTTTGAAACTGTTAATACTTCGAACTTAAGATGTGAATTAGAACTTAGGAGAAGTAAAAGACAGAGAACTGAGAAAAGTTTCGATCCAAATTTCCTAACCACCTTCATAGTGGAAAGGCGCGATGAAATTGACTGTAACTTCACAAACTTGTTTTTAATAGATGAGGATCCTAAAACTTACCAAGAAGCCCTGAACTCTGTAGAGTCAAGTATGTGGAAAGATGCTATTAAAAGTGAACTGGATTCACTGGTCATGAATCAAACATGGGACTTAGTGGACCTTCCCATGGGAAGCAAGCCAATTAAGTGTAAGTGGATCTTCAAAAGAAAAACAAAACCAAATGGGTCAATAGAAAGATACAAGATTAGATTAGTGGTAGTAGGATATACCCAGAAACAAGGCATTGATTACTTTGACACATATTCCTCTGTAACTAAGATAACTACAATTAGGGTCTTGATTGCATTAGTTGCCATACATAGCCTTCTTATTCACCAAATAGACGTAAAAACTGTCTTTCTAAATGGTGACTTAGAAGAAGAAATTTATATGACACAACCATAA

Protein sequence

MHDLENPSIISETPVFETVNTSNLRCELELRRSKRQRTEKSFDPNFLTTFIVERRDEIDCNFTNLFLIDEDPKTYQEALNSVESSMWKDAIKSELDSLVMNQTWDLVDLPMGSKPIKCKWIFKRKTKPNGSIERYKIRLVVVGYTQKQGIDYFDTYSSVTKITTIRVLIALVAIHSLLIHQIDVKTVFLNGDLEEEIYMTQP

Homology

[Close]

BLAST of Cmc04g0105431 vs. NCBI nr
Match: TYK06518.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 341.3 bits (874), Expect = 5.8e-90
Identity = 170/202 (84.16%), Postives = 183/202 (90.59%), Query Frame = 0


Query: 1   MHDLENPSIISETPVFETVNTSNLRCELELRRSKRQRTEKSFDPNFLTTFIVERRDEIDC 60
           MHD   P I+SE PV ETV+T NL CELE RRSKRQRTEKSF P+FL+TFIVERRDEIDC
Sbjct: 766 MHD---PEIVSEIPVSETVDTPNLSCELEPRRSKRQRTEKSFGPDFLSTFIVERRDEIDC 825

Query: 61  NFTNLFLIDEDPKTYQEALNSVESSMWKDAIKSELDSLVMNQTWDLVDLPMGSKPIKCKW 120
           NFTNLFLIDEDPKTYQEALNSV+S MWK+AIKSELDSL MN TW+LVDLPMG+KPI+CKW
Sbjct: 826 NFTNLFLIDEDPKTYQEALNSVDSRMWKEAIKSELDSLAMNHTWELVDLPMGNKPIRCKW 885

Query: 121 IFKRKTKPNGSIERYKIRLVVVGYTQKQGIDYFDTYSSVTKITTIRVLIALVAIHSLLIH 180
           IFKRKTKPNG IERYK RLVVVGYTQKQG+DYFDTYS VTKITTIR LIAL AIH+LLIH
Sbjct: 886 IFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIH 945

Query: 181 QIDVKTVFLNGDLEEEIYMTQP 203
           Q+DVKT FLNG+LEEEIYMTQP
Sbjct: 946 QMDVKTAFLNGNLEEEIYMTQP 964

[Close]

BLAST of Cmc04g0105431 vs. NCBI nr
Match: KAA0042080.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK18022.1 ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 293.9 bits (751), Expect = 1.1e-75
Identity = 146/168 (86.90%), Postives = 155/168 (92.26%), Query Frame = 0


Query: 1   MHDLENPSIISETPVFETVNTSNLRCELELRRSKRQRTEKSFDPNFLTTFIVERRDEIDC 60
           MHD ENPSI+SE PV ETV+TSNLRCELELRRSKRQRTEKSF  +FL+TFIVERRDEID 
Sbjct: 496 MHDPENPSIVSEIPVSETVDTSNLRCELELRRSKRQRTEKSFGQDFLSTFIVERRDEIDR 555

Query: 61  NFTNLFLIDEDPKTYQEALNSVESSMWKDAIKSELDSLVMNQTWDLVDLPMGSKPIKCKW 120
           NFTNL+LIDEDPKTYQEALNSV+ SMWK+AI SELDSLVMN TWDLVDLPM +KPI+CKW
Sbjct: 556 NFTNLYLIDEDPKTYQEALNSVDLSMWKEAINSELDSLVMNHTWDLVDLPMENKPIRCKW 615

Query: 121 IFKRKTKPNGSIERYKIRLVVVGYTQKQGIDYFDTYSSVTKITTIRVL 169
           IFKRKTKPNGSIERYK RLVVVGYTQKQGIDYFDTYS VTKITTIR L
Sbjct: 616 IFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRAL 663

[Close]

BLAST of Cmc04g0105431 vs. NCBI nr
Match: KAA0038001.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 282.3 bits (721), Expect = 3.2e-72
Identity = 138/159 (86.79%), Postives = 147/159 (92.45%), Query Frame = 0


Query: 1   MHDLENPSIISETPVFETVNTSNLRCELELRRSKRQRTEKSFDPNFLTTFIVERRDEIDC 60
           MHD EN SI+SET V E VNTSNLRCELELRRSKRQRTEKSF P+FL+TFIVERRDEID 
Sbjct: 494 MHDPENTSIVSETHVSEIVNTSNLRCELELRRSKRQRTEKSFSPDFLSTFIVERRDEIDF 553

Query: 61  NFTNLFLIDEDPKTYQEALNSVESSMWKDAIKSELDSLVMNQTWDLVDLPMGSKPIKCKW 120
           NFTNL+LIDEDPKTYQE LNSVE SMWK+AIKSELDSLVMN TWDLVDLPMG+KPI+C+W
Sbjct: 554 NFTNLYLIDEDPKTYQETLNSVELSMWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCRW 613

Query: 121 IFKRKTKPNGSIERYKIRLVVVGYTQKQGIDYFDTYSSV 160
           IFKRKTKPNGS+ERYK RLVVVGYTQKQGIDYFDTYS V
Sbjct: 614 IFKRKTKPNGSMERYKARLVVVGYTQKQGIDYFDTYSPV 652

[Close]

BLAST of Cmc04g0105431 vs. NCBI nr
Match: KAA0036643.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 277.3 bits (708), Expect = 1.0e-70
Identity = 137/166 (82.53%), Postives = 148/166 (89.16%), Query Frame = 0


Query: 1   MHDLENPSIISETPVFETVNTSNLRCELELRRSKRQRTEKSFDPNFLTTFIVERRDEIDC 60
           MHD   P I+SE PV E V+T NL CELE RRSKRQRTEKSF P+FL+TFIVERRDEIDC
Sbjct: 766 MHD---PEIVSEIPVSEIVDTPNLSCELEPRRSKRQRTEKSFGPDFLSTFIVERRDEIDC 825

Query: 61  NFTNLFLIDEDPKTYQEALNSVESSMWKDAIKSELDSLVMNQTWDLVDLPMGSKPIKCKW 120
           NFTNLFLI+ED KTYQEALNSV+S MWK+AIKSELDSL MN TW+LVDLPMG+KPI+CKW
Sbjct: 826 NFTNLFLINEDSKTYQEALNSVDSRMWKEAIKSELDSLAMNHTWELVDLPMGNKPIRCKW 885

Query: 121 IFKRKTKPNGSIERYKIRLVVVGYTQKQGIDYFDTYSSVTKITTIR 167
           IFKRKTKPNG IERYK RLVVVGYTQKQG+DYFDTYS VTKITTIR
Sbjct: 886 IFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIR 928

[Close]

BLAST of Cmc04g0105431 vs. NCBI nr
Match: TYJ97996.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 271.9 bits (694), Expect = 4.3e-69
Identity = 132/145 (91.03%), Postives = 139/145 (95.86%), Query Frame = 0


Query: 1   MHDLENPSIISETPVFETVNTSNLRCELELRRSKRQRTEKSFDPNFLTTFIVERRDEIDC 60
           MHD ENPSI+SETPV ETVNTSNLRCELEL RSKRQRTEKSF P+FL+TFIVERRDEIDC
Sbjct: 350 MHDPENPSIVSETPVSETVNTSNLRCELELMRSKRQRTEKSFGPDFLSTFIVERRDEIDC 409

Query: 61  NFTNLFLIDEDPKTYQEALNSVESSMWKDAIKSELDSLVMNQTWDLVDLPMGSKPIKCKW 120
           NFTNL+LIDEDPKTYQEALNSVESSMWK+AIKSELDSLVMN TWDLVDLPMG+KPI+CKW
Sbjct: 410 NFTNLYLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKW 469

Query: 121 IFKRKTKPNGSIERYKIRLVVVGYT 146
           IFKRKTKPNGSIERYK RLVVVGYT
Sbjct: 470 IFKRKTKPNGSIERYKTRLVVVGYT 494

[Close]

BLAST of Cmc04g0105431 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 1.8e-30
Identity = 74/173 (42.77%), Postives = 108/173 (62.43%), Query Frame = 0


Query: 30  LRRSKRQRTEKSFDPNFLTTFIVERRDEIDCNFTNLFLIDEDPKTYQEALNSVESSMWKD 89
           LRRS+R R E    P+  T ++             L   D +P++ +E L+  E +    
Sbjct: 784 LRRSERPRVESRRYPS--TEYV-------------LISDDREPESLKEVLSHPEKNQLMK 843

Query: 90  AIKSELDSLVMNQTWDLVDLPMGSKPIKCKWIFKRKTKPNGSIERYKIRLVVVGYTQKQG 149
           A++ E++SL  N T+ LV+LP G +P+KCKW+FK K   +  + RYK RLVV G+ QK+G
Sbjct: 844 AMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKG 903

Query: 150 IDYFDTYSSVTKITTIRVLIALVAIHSLLIHQIDVKTVFLNGDLEEEIYMTQP 203
           ID+ + +S V K+T+IR +++L A   L + Q+DVKT FL+GDLEEEIYM QP
Sbjct: 904 IDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQP 941

[Close]

BLAST of Cmc04g0105431 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 4.4e-24
Identity = 56/135 (41.48%), Postives = 86/135 (63.70%), Query Frame = 0


Query: 69   DEDPKTYQEALNSVESSMWKDAIKSELDSLVMNQTWDLVDLPMGSKPI-KCKWIFKRKTK 128
            + +P+T   A+ +++   W+ A+ SE+++ + N TWDLV  P  S  I  C+WIF +K  
Sbjct: 936  NSEPRT---AIQAMKDDRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFN 995

Query: 129  PNGSIERYKIRLVVVGYTQKQGIDYFDTYSSVTKITTIRVLIALVAIHSLLIHQIDVKTV 188
             +GS+ RYK RLV  GY Q+ G+DY +T+S V K T+IR+++ +    S  I Q+DV   
Sbjct: 996  SDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNA 1055

Query: 189  FLNGDLEEEIYMTQP 203
            FL G L +E+YM+QP
Sbjct: 1056 FLQGTLTDEVYMSQP 1067

[Close]

BLAST of Cmc04g0105431 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 111.3 bits (277), Expect = 1.3e-23
Identity = 66/183 (36.07%), Postives = 102/183 (55.74%), Query Frame = 0


Query: 21   TSNLRCELELRRSKRQRTEKSFDPNFLTTFIVERRDEIDCNFTNLFLIDED-PKTYQEAL 80
            T N   E+  RRS+R +T+     N       E  + ++    N   I  D P ++ E  
Sbjct: 846  TKNDGIEIINRRSERLKTKPQISYN-------EEDNSLNKVVLNAHTIFNDVPNSFDEIQ 905

Query: 81   NSVESSMWKDAIKSELDSLVMNQTWDLVDLPMGSKPIKCKWIFKRKTKPNGSIERYKIRL 140
               + S W++AI +EL++  +N TW +   P     +  +W+F  K    G+  RYK RL
Sbjct: 906  YRDDKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARL 965

Query: 141  VVVGYTQKQGIDYFDTYSSVTKITTIRVLIALVAIHSLLIHQIDVKTVFLNGDLEEEIYM 200
            V  G+TQK  IDY +T++ V +I++ R +++LV  ++L +HQ+DVKT FLNG L+EEIYM
Sbjct: 966  VARGFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYM 1021

Query: 201  TQP 203
              P
Sbjct: 1026 RLP 1021

[Close]

BLAST of Cmc04g0105431 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.3e-23
Identity = 54/135 (40.00%), Postives = 86/135 (63.70%), Query Frame = 0


Query: 69   DEDPKTYQEALNSVESSMWKDAIKSELDSLVMNQTWDLVDLPMGSKPI-KCKWIFKRKTK 128
            + +P+T   A+ +++   W++A+ SE+++ + N TWDLV  P     I  C+WIF +K  
Sbjct: 953  ESEPRT---AIQALKDERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYN 1012

Query: 129  PNGSIERYKIRLVVVGYTQKQGIDYFDTYSSVTKITTIRVLIALVAIHSLLIHQIDVKTV 188
             +GS+ RYK RLV  GY Q+ G+DY +T+S V K T+IR+++ +    S  I Q+DV   
Sbjct: 1013 SDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNA 1072

Query: 189  FLNGDLEEEIYMTQP 203
            FL G L +++YM+QP
Sbjct: 1073 FLQGTLTDDVYMSQP 1084

[Close]

BLAST of Cmc04g0105431 vs. ExPASy Swiss-Prot
Match: P92520 (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.1e-14
Identity = 38/102 (37.25%), Postives = 64/102 (62.75%), Query Frame = 0


Query: 68  IDEDPKTYQEALNSVESSMWKDAIKSELDSLVMNQTWDLVDLPMGSKPIKCKWIFKRKTK 127
           I ++PK+    + +++   W  A++ ELD+L  N+TW LV  P+    + CKW+FK K  
Sbjct: 24  IKKEPKS---VIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLH 83

Query: 128 PNGSIERYKIRLVVVGYTQKQGIDYFDTYSSVTKITTIRVLI 170
            +G+++R K RLV  G+ Q++GI + +TYS V +  TIR ++
Sbjct: 84  SDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTIL 122

[Close]

BLAST of Cmc04g0105431 vs. ExPASy TrEMBL
Match: A0A5D3C5T2 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold70G00500 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 2.8e-90
Identity = 170/202 (84.16%), Postives = 183/202 (90.59%), Query Frame = 0


Query: 1   MHDLENPSIISETPVFETVNTSNLRCELELRRSKRQRTEKSFDPNFLTTFIVERRDEIDC 60
           MHD   P I+SE PV ETV+T NL CELE RRSKRQRTEKSF P+FL+TFIVERRDEIDC
Sbjct: 766 MHD---PEIVSEIPVSETVDTPNLSCELEPRRSKRQRTEKSFGPDFLSTFIVERRDEIDC 825

Query: 61  NFTNLFLIDEDPKTYQEALNSVESSMWKDAIKSELDSLVMNQTWDLVDLPMGSKPIKCKW 120
           NFTNLFLIDEDPKTYQEALNSV+S MWK+AIKSELDSL MN TW+LVDLPMG+KPI+CKW
Sbjct: 826 NFTNLFLIDEDPKTYQEALNSVDSRMWKEAIKSELDSLAMNHTWELVDLPMGNKPIRCKW 885

Query: 121 IFKRKTKPNGSIERYKIRLVVVGYTQKQGIDYFDTYSSVTKITTIRVLIALVAIHSLLIH 180
           IFKRKTKPNG IERYK RLVVVGYTQKQG+DYFDTYS VTKITTIR LIAL AIH+LLIH
Sbjct: 886 IFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIRALIALAAIHNLLIH 945

Query: 181 QIDVKTVFLNGDLEEEIYMTQP 203
           Q+DVKT FLNG+LEEEIYMTQP
Sbjct: 946 QMDVKTAFLNGNLEEEIYMTQP 964

[Close]

BLAST of Cmc04g0105431 vs. ExPASy TrEMBL
Match: A0A5A7TFH9 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G003410 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 5.1e-76
Identity = 146/168 (86.90%), Postives = 155/168 (92.26%), Query Frame = 0


Query: 1   MHDLENPSIISETPVFETVNTSNLRCELELRRSKRQRTEKSFDPNFLTTFIVERRDEIDC 60
           MHD ENPSI+SE PV ETV+TSNLRCELELRRSKRQRTEKSF  +FL+TFIVERRDEID 
Sbjct: 496 MHDPENPSIVSEIPVSETVDTSNLRCELELRRSKRQRTEKSFGQDFLSTFIVERRDEIDR 555

Query: 61  NFTNLFLIDEDPKTYQEALNSVESSMWKDAIKSELDSLVMNQTWDLVDLPMGSKPIKCKW 120
           NFTNL+LIDEDPKTYQEALNSV+ SMWK+AI SELDSLVMN TWDLVDLPM +KPI+CKW
Sbjct: 556 NFTNLYLIDEDPKTYQEALNSVDLSMWKEAINSELDSLVMNHTWDLVDLPMENKPIRCKW 615

Query: 121 IFKRKTKPNGSIERYKIRLVVVGYTQKQGIDYFDTYSSVTKITTIRVL 169
           IFKRKTKPNGSIERYK RLVVVGYTQKQGIDYFDTYS VTKITTIR L
Sbjct: 616 IFKRKTKPNGSIERYKARLVVVGYTQKQGIDYFDTYSPVTKITTIRAL 663

[Close]

BLAST of Cmc04g0105431 vs. ExPASy TrEMBL
Match: A0A5A7T8N6 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold36G001890 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.5e-72
Identity = 138/159 (86.79%), Postives = 147/159 (92.45%), Query Frame = 0


Query: 1   MHDLENPSIISETPVFETVNTSNLRCELELRRSKRQRTEKSFDPNFLTTFIVERRDEIDC 60
           MHD EN SI+SET V E VNTSNLRCELELRRSKRQRTEKSF P+FL+TFIVERRDEID 
Sbjct: 494 MHDPENTSIVSETHVSEIVNTSNLRCELELRRSKRQRTEKSFSPDFLSTFIVERRDEIDF 553

Query: 61  NFTNLFLIDEDPKTYQEALNSVESSMWKDAIKSELDSLVMNQTWDLVDLPMGSKPIKCKW 120
           NFTNL+LIDEDPKTYQE LNSVE SMWK+AIKSELDSLVMN TWDLVDLPMG+KPI+C+W
Sbjct: 554 NFTNLYLIDEDPKTYQETLNSVELSMWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCRW 613

Query: 121 IFKRKTKPNGSIERYKIRLVVVGYTQKQGIDYFDTYSSV 160
           IFKRKTKPNGS+ERYK RLVVVGYTQKQGIDYFDTYS V
Sbjct: 614 IFKRKTKPNGSMERYKARLVVVGYTQKQGIDYFDTYSPV 652

[Close]

BLAST of Cmc04g0105431 vs. ExPASy TrEMBL
Match: A0A5A7T166 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold3921G00120 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 5.0e-71
Identity = 137/166 (82.53%), Postives = 148/166 (89.16%), Query Frame = 0


Query: 1   MHDLENPSIISETPVFETVNTSNLRCELELRRSKRQRTEKSFDPNFLTTFIVERRDEIDC 60
           MHD   P I+SE PV E V+T NL CELE RRSKRQRTEKSF P+FL+TFIVERRDEIDC
Sbjct: 766 MHD---PEIVSEIPVSEIVDTPNLSCELEPRRSKRQRTEKSFGPDFLSTFIVERRDEIDC 825

Query: 61  NFTNLFLIDEDPKTYQEALNSVESSMWKDAIKSELDSLVMNQTWDLVDLPMGSKPIKCKW 120
           NFTNLFLI+ED KTYQEALNSV+S MWK+AIKSELDSL MN TW+LVDLPMG+KPI+CKW
Sbjct: 826 NFTNLFLINEDSKTYQEALNSVDSRMWKEAIKSELDSLAMNHTWELVDLPMGNKPIRCKW 885

Query: 121 IFKRKTKPNGSIERYKIRLVVVGYTQKQGIDYFDTYSSVTKITTIR 167
           IFKRKTKPNG IERYK RLVVVGYTQKQG+DYFDTYS VTKITTIR
Sbjct: 886 IFKRKTKPNGLIERYKARLVVVGYTQKQGVDYFDTYSPVTKITTIR 928

[Close]

BLAST of Cmc04g0105431 vs. ExPASy TrEMBL
Match: A0A5D3BFX4 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00190 PE=4 SV=1)

HSP 1 Score: 271.9 bits (694), Expect = 2.1e-69
Identity = 132/145 (91.03%), Postives = 139/145 (95.86%), Query Frame = 0


Query: 1   MHDLENPSIISETPVFETVNTSNLRCELELRRSKRQRTEKSFDPNFLTTFIVERRDEIDC 60
           MHD ENPSI+SETPV ETVNTSNLRCELEL RSKRQRTEKSF P+FL+TFIVERRDEIDC
Sbjct: 350 MHDPENPSIVSETPVSETVNTSNLRCELELMRSKRQRTEKSFGPDFLSTFIVERRDEIDC 409

Query: 61  NFTNLFLIDEDPKTYQEALNSVESSMWKDAIKSELDSLVMNQTWDLVDLPMGSKPIKCKW 120
           NFTNL+LIDEDPKTYQEALNSVESSMWK+AIKSELDSLVMN TWDLVDLPMG+KPI+CKW
Sbjct: 410 NFTNLYLIDEDPKTYQEALNSVESSMWKEAIKSELDSLVMNHTWDLVDLPMGNKPIRCKW 469

Query: 121 IFKRKTKPNGSIERYKIRLVVVGYT 146
           IFKRKTKPNGSIERYK RLVVVGYT
Sbjct: 470 IFKRKTKPNGSIERYKTRLVVVGYT 494

[Close]

BLAST of Cmc04g0105431 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 133.7 bits (335), Expect = 1.7e-31
Identity = 60/133 (45.11%), Postives = 92/133 (69.17%), Query Frame = 0


Query: 70  EDPKTYQEALNSVESSMWKDAIKSELDSLVMNQTWDLVDLPMGSKPIKCKWIFKRKTKPN 129
           ++P TY EA    E  +W  A+  E+ ++    TW++  LP   KPI CKW++K K   +
Sbjct: 84  KEPSTYNEA---KEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSD 143

Query: 130 GSIERYKIRLVVVGYTQKQGIDYFDTYSSVTKITTIRVLIALVAIHSLLIHQIDVKTVFL 189
           G+IERYK RLV  GYTQ++GID+ +T+S V K+T++++++A+ AI++  +HQ+D+   FL
Sbjct: 144 GTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFL 203

Query: 190 NGDLEEEIYMTQP 203
           NGDL+EEIYM  P
Sbjct: 204 NGDLDEEIYMKLP 213

[Close]

BLAST of Cmc04g0105431 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 79.7 bits (195), Expect = 2.9e-15
Identity = 38/102 (37.25%), Postives = 64/102 (62.75%), Query Frame = 0


Query: 68  IDEDPKTYQEALNSVESSMWKDAIKSELDSLVMNQTWDLVDLPMGSKPIKCKWIFKRKTK 127
           I ++PK+    + +++   W  A++ ELD+L  N+TW LV  P+    + CKW+FK K  
Sbjct: 24  IKKEPKS---VIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLH 83

Query: 128 PNGSIERYKIRLVVVGYTQKQGIDYFDTYSSVTKITTIRVLI 170
            +G+++R K RLV  G+ Q++GI + +TYS V +  TIR ++
Sbjct: 84  SDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIRTIL 122

The following BLAST results are available for this feature:

BLAST of Cmc04g0105431 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK06518.1	5.8e-90	84.16	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0042080.1	1.1e-75	86.90	ty1-copia retrotransposon protein [Cucumis melo var. makuwa] >TYK18022.1 ty1-cop...	[more]
KAA0038001.1	3.2e-72	86.79	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0036643.1	1.0e-70	82.53	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYJ97996.1	4.3e-69	91.03	ty1-copia retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0105431 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	1.8e-30	42.77	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	4.4e-24	41.48	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	1.3e-23	36.07	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	1.3e-23	40.00	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P92520	4.1e-14	37.25	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Cmc04g0105431 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C5T2	2.8e-90	84.16	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TFH9	5.1e-76	86.90	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7T8N6	1.5e-72	86.79	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7T166	5.0e-71	82.53	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5D3BFX4	2.1e-69	91.03	Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of Cmc04g0105431 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	1.7e-31	45.11	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	2.9e-15	37.25	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 101..202 e-value: 2.0E-30 score: 106.2
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 70..202

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0105431.1	Cmc04g0105431.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0008270	zinc ion binding