Cmc04g0104471 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0104471
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Protein FAR1-RELATED SEQUENCE 3-like
Location	CMiso1.1chr04: 22221541 .. 22221873 (+)
RNA-Seq Expression	Cmc04g0104471
Synteny	Cmc04g0104471

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGATAGATTCTGTTATTGAATACAAAGTTGATGCCGATGGTAGATTTCTTTACTTCTTCATAGCATTATCTGCTTCCATTTCTGGTTGGCAACATTGTCGTCCAGTCATTTTTATTGATGGAACAAGTTTGAAGAATAAGTACGGTGGTACTTTGTTATTTGCTTCAACACCTGATGCCAATGATCAGATTTTTTCACTAGCCTTTTGTGTTGTGGATGAGAATGATTCCTCATGGACCTGGTTTTGCAACCAATTGAAGAGAGTTATAGGTGGCCGGAATGAGGTTGTCATAGTATCTGTAGGCATAAAAGTATATGCAAAGCTATAG

mRNA sequence

ATGTTGATAGATTCTGTTATTGAATACAAAGTTGATGCCGATGGTAGATTTCTTTACTTCTTCATAGCATTATCTGCTTCCATTTCTGGTTGGCAACATTGTCGTCCAGTCATTTTTATTGATGGAACAAGTTTGAAGAATAAGTACGGTGGTACTTTGTTATTTGCTTCAACACCTGATGCCAATGATCAGATTTTTTCACTAGCCTTTTGTGTTGTGGATGAGAATGATTCCTCATGGACCTGGTTTTGCAACCAATTGAAGAGAGTTATAGGTGGCCGGAATGAGGTTGTCATAGTATCTGTAGGCATAAAAGTATATGCAAAGCTATAG

Coding sequence (CDS)

ATGTTGATAGATTCTGTTATTGAATACAAAGTTGATGCCGATGGTAGATTTCTTTACTTCTTCATAGCATTATCTGCTTCCATTTCTGGTTGGCAACATTGTCGTCCAGTCATTTTTATTGATGGAACAAGTTTGAAGAATAAGTACGGTGGTACTTTGTTATTTGCTTCAACACCTGATGCCAATGATCAGATTTTTTCACTAGCCTTTTGTGTTGTGGATGAGAATGATTCCTCATGGACCTGGTTTTGCAACCAATTGAAGAGAGTTATAGGTGGCCGGAATGAGGTTGTCATAGTATCTGTAGGCATAAAAGTATATGCAAAGCTATAG

Protein sequence

MLIDSVIEYKVDADGRFLYFFIALSASISGWQHCRPVIFIDGTSLKNKYGGTLLFASTPDANDQIFSLAFCVVDENDSSWTWFCNQLKRVIGGRNEVVIVSVGIKVYAKL

Homology

[Close]

BLAST of Cmc04g0104471 vs. NCBI nr
Match: KAA0051047.1 (protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa] >KAA0054885.1 protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa] >TYK08704.1 protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 224.2 bits (570), Expect = 5.6e-55
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 4   DSVIEYKVDADGRFLYFFIALSASISGWQHCRPVIFIDGTSLKNKYGGTLLFASTPDAND 63
           DSVIEYKVDADGRFLYFFIALSASISGWQHCRPVIFIDGTSLKNKYGGTLLFASTPDAND
Sbjct: 15  DSVIEYKVDADGRFLYFFIALSASISGWQHCRPVIFIDGTSLKNKYGGTLLFASTPDAND 74

Query: 64  QIFSLAFCVVDENDSSWTWFCNQLKRVIGGRNEVVIVSVGIKVYAKL 111
           QIFSLAFCVVDENDSSWTWFCNQLKRVIGGRNEVVIVSVGIKVYAKL
Sbjct: 75  QIFSLAFCVVDENDSSWTWFCNQLKRVIGGRNEVVIVSVGIKVYAKL 121

[Close]

BLAST of Cmc04g0104471 vs. NCBI nr
Match: KAA0045551.1 (protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa] >TYK28842.1 protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 180.6 bits (457), Expect = 7.1e-42
Identity = 86/97 (88.66%), Postives = 91/97 (93.81%), Query Frame = 0


Query: 6   VIEYKVDADGRFLYFFIALSASISGWQHCRPVIFIDGTSLKNKYGGTLLFASTPDANDQI 65
           VIEYKVDADGRFLYFF+ LSASISGWQHCRPVIFIDGTS KNKYGGTLL ASTPD+NDQI
Sbjct: 15  VIEYKVDADGRFLYFFMELSASISGWQHCRPVIFIDGTSPKNKYGGTLLSASTPDSNDQI 74

Query: 66  FSLAFCVVD-ENDSSWTWFCNQLKRVIGGRNEVVIVS 102
           F LAFCVVD ENDSSWTWFCNQLKR+I G+N+VVIVS
Sbjct: 75  FRLAFCVVDSENDSSWTWFCNQLKRIICGQNDVVIVS 111

[Close]

BLAST of Cmc04g0104471 vs. NCBI nr
Match: XP_008461035.1 (PREDICTED: uncharacterized protein LOC103499740 [Cucumis melo])

HSP 1 Score: 180.6 bits (457), Expect = 7.1e-42
Identity = 86/97 (88.66%), Postives = 91/97 (93.81%), Query Frame = 0


Query: 6   VIEYKVDADGRFLYFFIALSASISGWQHCRPVIFIDGTSLKNKYGGTLLFASTPDANDQI 65
           VIEYKVDADGRFLYFF+ LSASISGWQHCRPVIFIDGTS KNKYGGTLL ASTPD+NDQI
Sbjct: 135 VIEYKVDADGRFLYFFMELSASISGWQHCRPVIFIDGTSPKNKYGGTLLSASTPDSNDQI 194

Query: 66  FSLAFCVVD-ENDSSWTWFCNQLKRVIGGRNEVVIVS 102
           F LAFCVVD ENDSSWTWFCNQLKR+I G+N+VVIVS
Sbjct: 195 FRLAFCVVDSENDSSWTWFCNQLKRIICGQNDVVIVS 231

[Close]

BLAST of Cmc04g0104471 vs. NCBI nr
Match: XP_008450229.1 (PREDICTED: uncharacterized protein LOC103491892 [Cucumis melo])

HSP 1 Score: 176.8 bits (447), Expect = 1.0e-40
Identity = 82/102 (80.39%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 1   MLIDSVIEYKVDADGRFLYFFIALSASISGWQHCRPVIFIDGTSLKNKYGGTLLFASTPD 60
           +LI SV+EYK+DADGRFLYFF+ LSA +  WQHCRP+I IDGTSLKNK+GGTLL  STPD
Sbjct: 11  ILISSVVEYKIDADGRFLYFFMTLSAFVFCWQHCRPIISIDGTSLKNKHGGTLLSTSTPD 70

Query: 61  ANDQIFSLAFCVVD-ENDSSWTWFCNQLKRVIGGRNEVVIVS 102
           ANDQIF LAFCVVD +NDSSWTWFCNQLKR+IGG+NEVVIVS
Sbjct: 71  ANDQIFPLAFCVVDSKNDSSWTWFCNQLKRIIGGQNEVVIVS 112

[Close]

BLAST of Cmc04g0104471 vs. NCBI nr
Match: KAA0065298.1 (protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa] >TYK24165.1 protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 174.9 bits (442), Expect = 3.9e-40
Identity = 85/98 (86.73%), Postives = 89/98 (90.82%), Query Frame = 0


Query: 5   SVIEYKVDADGRFLYFFIALSASISGWQHCRPVIFIDGTSLKNKYGGTLLFASTPDANDQ 64
           SV+EYKVDA+ RFLY F+ LS SISGWQHCRPVI IDGTSLKNKYGGTLL ASTPDANDQ
Sbjct: 16  SVVEYKVDANDRFLYLFMTLSTSISGWQHCRPVISIDGTSLKNKYGGTLLSASTPDANDQ 75

Query: 65  IFSLAFCVVD-ENDSSWTWFCNQLKRVIGGRNEVVIVS 102
           IFSLAFCVVD ENDSSWT FCNQLKR+IGGRNEV IVS
Sbjct: 76  IFSLAFCVVDYENDSSWTRFCNQLKRIIGGRNEVDIVS 113

[Close]

BLAST of Cmc04g0104471 vs. ExPASy TrEMBL
Match: A0A5A7U9G2 (Protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold75709G00010 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 2.7e-55
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0


Query: 4   DSVIEYKVDADGRFLYFFIALSASISGWQHCRPVIFIDGTSLKNKYGGTLLFASTPDAND 63
           DSVIEYKVDADGRFLYFFIALSASISGWQHCRPVIFIDGTSLKNKYGGTLLFASTPDAND
Sbjct: 15  DSVIEYKVDADGRFLYFFIALSASISGWQHCRPVIFIDGTSLKNKYGGTLLFASTPDAND 74

Query: 64  QIFSLAFCVVDENDSSWTWFCNQLKRVIGGRNEVVIVSVGIKVYAKL 111
           QIFSLAFCVVDENDSSWTWFCNQLKRVIGGRNEVVIVSVGIKVYAKL
Sbjct: 75  QIFSLAFCVVDENDSSWTWFCNQLKRVIGGRNEVVIVSVGIKVYAKL 121

[Close]

BLAST of Cmc04g0104471 vs. ExPASy TrEMBL
Match: A0A5D3DZ08 (Protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold303G00490 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.5e-42
Identity = 86/97 (88.66%), Postives = 91/97 (93.81%), Query Frame = 0


Query: 6   VIEYKVDADGRFLYFFIALSASISGWQHCRPVIFIDGTSLKNKYGGTLLFASTPDANDQI 65
           VIEYKVDADGRFLYFF+ LSASISGWQHCRPVIFIDGTS KNKYGGTLL ASTPD+NDQI
Sbjct: 15  VIEYKVDADGRFLYFFMELSASISGWQHCRPVIFIDGTSPKNKYGGTLLSASTPDSNDQI 74

Query: 66  FSLAFCVVD-ENDSSWTWFCNQLKRVIGGRNEVVIVS 102
           F LAFCVVD ENDSSWTWFCNQLKR+I G+N+VVIVS
Sbjct: 75  FRLAFCVVDSENDSSWTWFCNQLKRIICGQNDVVIVS 111

[Close]

BLAST of Cmc04g0104471 vs. ExPASy TrEMBL
Match: A0A1S3CF11 (uncharacterized protein LOC103499740 OS=Cucumis melo OX=3656 GN=LOC103499740 PE=4 SV=1)

HSP 1 Score: 180.6 bits (457), Expect = 3.5e-42
Identity = 86/97 (88.66%), Postives = 91/97 (93.81%), Query Frame = 0


Query: 6   VIEYKVDADGRFLYFFIALSASISGWQHCRPVIFIDGTSLKNKYGGTLLFASTPDANDQI 65
           VIEYKVDADGRFLYFF+ LSASISGWQHCRPVIFIDGTS KNKYGGTLL ASTPD+NDQI
Sbjct: 135 VIEYKVDADGRFLYFFMELSASISGWQHCRPVIFIDGTSPKNKYGGTLLSASTPDSNDQI 194

Query: 66  FSLAFCVVD-ENDSSWTWFCNQLKRVIGGRNEVVIVS 102
           F LAFCVVD ENDSSWTWFCNQLKR+I G+N+VVIVS
Sbjct: 195 FRLAFCVVDSENDSSWTWFCNQLKRIICGQNDVVIVS 231

[Close]

BLAST of Cmc04g0104471 vs. ExPASy TrEMBL
Match: A0A1S3BPE6 (uncharacterized protein LOC103491892 OS=Cucumis melo OX=3656 GN=LOC103491892 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 5.0e-41
Identity = 82/102 (80.39%), Postives = 92/102 (90.20%), Query Frame = 0


Query: 1   MLIDSVIEYKVDADGRFLYFFIALSASISGWQHCRPVIFIDGTSLKNKYGGTLLFASTPD 60
           +LI SV+EYK+DADGRFLYFF+ LSA +  WQHCRP+I IDGTSLKNK+GGTLL  STPD
Sbjct: 11  ILISSVVEYKIDADGRFLYFFMTLSAFVFCWQHCRPIISIDGTSLKNKHGGTLLSTSTPD 70

Query: 61  ANDQIFSLAFCVVD-ENDSSWTWFCNQLKRVIGGRNEVVIVS 102
           ANDQIF LAFCVVD +NDSSWTWFCNQLKR+IGG+NEVVIVS
Sbjct: 71  ANDQIFPLAFCVVDSKNDSSWTWFCNQLKRIIGGQNEVVIVS 112

[Close]

BLAST of Cmc04g0104471 vs. ExPASy TrEMBL
Match: A0A5A7VCD5 (Protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1425G00010 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.9e-40
Identity = 85/98 (86.73%), Postives = 89/98 (90.82%), Query Frame = 0


Query: 5   SVIEYKVDADGRFLYFFIALSASISGWQHCRPVIFIDGTSLKNKYGGTLLFASTPDANDQ 64
           SV+EYKVDA+ RFLY F+ LS SISGWQHCRPVI IDGTSLKNKYGGTLL ASTPDANDQ
Sbjct: 16  SVVEYKVDANDRFLYLFMTLSTSISGWQHCRPVISIDGTSLKNKYGGTLLSASTPDANDQ 75

Query: 65  IFSLAFCVVD-ENDSSWTWFCNQLKRVIGGRNEVVIVS 102
           IFSLAFCVVD ENDSSWT FCNQLKR+IGGRNEV IVS
Sbjct: 76  IFSLAFCVVDYENDSSWTRFCNQLKRIIGGRNEVDIVS 113

[Close]

BLAST of Cmc04g0104471 vs. TAIR 10
Match: AT1G49920.1 (MuDR family transposase )

HSP 1 Score: 68.9 bits (167), Expect = 2.8e-12
Identity = 35/86 (40.70%), Postives = 49/86 (56.98%), Query Frame = 0


Query: 17  FLYFFIALSASISGWQHCRPVIFIDGTSLKNKYGGTLLFASTPDANDQIFSLAFCVVDE- 76
           F   F A S SI G+QHCRP+I +D  +L  KY   L+ AS  DA +Q F LAF V  E 
Sbjct: 361 FRGLFWAFSQSIQGFQHCRPLIVVDTKNLGGKYKMKLMIASAFDATNQYFPLAFAVTKEV 420

Query: 77  NDSSWTWFCNQLKRVIGGRNEVVIVS 102
           +  SW WF  +++  +  R  + ++S
Sbjct: 421 SVDSWRWFLTRIREKVTQRQGICLIS 446

[Close]

BLAST of Cmc04g0104471 vs. TAIR 10
Match: AT1G64260.1 (MuDR family transposase )

HSP 1 Score: 68.9 bits (167), Expect = 2.8e-12
Identity = 33/82 (40.24%), Postives = 49/82 (59.76%), Query Frame = 0


Query: 21  FIALSASISGWQHCRPVIFIDGTSLKNKYGGTLLFASTPDANDQIFSLAFCVVDE-NDSS 80
           F + S SI G+QHCRP+I +D  SL  KY   L+ AS  DA ++ F LAF V  E +  S
Sbjct: 362 FWSFSQSIEGFQHCRPLIVVDTKSLNGKYQLKLMIASGVDAANKFFPLAFAVTKEVSTDS 421

Query: 81  WTWFCNQLKRVIGGRNEVVIVS 102
           W WF  +++  +  R ++ ++S
Sbjct: 422 WRWFFTKIREKVTQRKDLCLIS 443

[Close]

BLAST of Cmc04g0104471 vs. TAIR 10
Match: AT1G64255.1 (MuDR family transposase )

HSP 1 Score: 58.9 bits (141), Expect = 2.9e-09
Identity = 31/86 (36.05%), Postives = 46/86 (53.49%), Query Frame = 0


Query: 17  FLYFFIALSASISGWQHCRPVIFIDGTSLKNKYGGTLLFASTPDANDQIFSLAFCVVDE- 76
           F   F A   SI G+QHCRP+I +D  +L  +Y   L+ AS  DA ++ F LAF V  E 
Sbjct: 365 FCGVFWAFPQSIEGFQHCRPLIVVDTKNLNCEYQLKLMIASGVDAANKYFPLAFAVTKEV 424

Query: 77  NDSSWTWFCNQLKRVIGGRNEVVIVS 102
           +   W WF   ++  +  R  + ++S
Sbjct: 425 STDIWRWFLTGIREKVTQRKGLCLIS 450

The following BLAST results are available for this feature:

BLAST of Cmc04g0104471 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051047.1	5.6e-55	100.00	protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa] >KAA0054885.1 pr...	[more]
KAA0045551.1	7.1e-42	88.66	protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa] >TYK28842.1 prot...	[more]
XP_008461035.1	7.1e-42	88.66	PREDICTED: uncharacterized protein LOC103499740 [Cucumis melo]	[more]
XP_008450229.1	1.0e-40	80.39	PREDICTED: uncharacterized protein LOC103491892 [Cucumis melo]	[more]
KAA0065298.1	3.9e-40	86.73	protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa] >TYK24165.1 prot...	[more]

BLAST of Cmc04g0104471 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc04g0104471 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U9G2	2.7e-55	100.00	Protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3DZ08	3.5e-42	88.66	Protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A1S3CF11	3.5e-42	88.66	uncharacterized protein LOC103499740 OS=Cucumis melo OX=3656 GN=LOC103499740 PE=...	[more]
A0A1S3BPE6	5.0e-41	80.39	uncharacterized protein LOC103491892 OS=Cucumis melo OX=3656 GN=LOC103491892 PE=...	[more]
A0A5A7VCD5	1.9e-40	86.73	Protein FAR1-RELATED SEQUENCE 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of Cmc04g0104471 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G49920.1	2.8e-12	40.70	MuDR family transposase	[more]
AT1G64260.1	2.8e-12	40.24	MuDR family transposase	[more]
AT1G64255.1	2.9e-09	36.05	MuDR family transposase	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018289	MULE transposase domain	PFAM	PF10551	MULE	coord: 37..100 e-value: 2.4E-8 score: 34.3
None	No IPR available	PANTHER	PTHR31973	POLYPROTEIN, PUTATIVE-RELATED	coord: 12..93

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0104471.1	Cmc04g0104471.1	mRNA