Cmc04g0104151 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0104151
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr04: 21578827 .. 21579498 (-)
RNA-Seq Expression	Cmc04g0104151
Synteny	Cmc04g0104151

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGATGTGGATTGTGACCAATGGATCAAATCCATGGACCTTGAAATGGAATCTATGTATTCCAATTCTGTCTGGACTCTAGTAGAACAACCAAATGATGTAAAACCTATTGGTTGTAAATGGATCTACAAGAGAAAACGGGACCAAGCTGGTAAAACACAGACTTTCAAAGCTCGACTTGTAGCAAATGGTTATACACAAAAAGAGGGAATAGATTATGAAGAAACTTTCTCTCCTGTTGCCATGATAAAGTCGATTAGAATACTCTTATCCATCGCCACTTTTTATGATTATGAAATTTGGCAGATGGATGTCAAGACAGCCTTTTTAAACGGTAATCTTGAAGAGAGTATTTATATGGTCCAACCAAAGGGGTTTATAAAAAAGGGTCGAGAACAAAAGGTTCGTAAGCTTCAAAAATCTATTTATGGATTAAAACAAGCTTCTAGGTCCTGGAATATAAGGTTTGATACTCCGATCAAATCTTATGGTTTTGAACAAAATGTTGATGAACCTTGTGTTTACAAAAGGATCATCAATTTTATTGTAGCATTCTTAGTTCTGTATGTAGATGACATTCTACTCATTGGGAATGATGTAAGTCATTTAACTGATATTAAGAAATGGCTAGCTACGCAATTCCAAATGAAATTTTTGGGAAACACATAA

mRNA sequence

ATGAATGATGTGGATTGTGACCAATGGATCAAATCCATGGACCTTGAAATGGAATCTATGTATTCCAATTCTGTCTGGACTCTAGTAGAACAACCAAATGATGTAAAACCTATTGGTTGTAAATGGATCTACAAGAGAAAACGGGACCAAGCTGGTAAAACACAGACTTTCAAAGCTCGACTTGTAGCAAATGGTTATACACAAAAAGAGGGAATAGATTATGAAGAAACTTTCTCTCCTGTTGCCATGATAAAGTCGATTAGAATACTCTTATCCATCGCCACTTTTTATGATTATGAAATTTGGCAGATGGATGTCAAGACAGCCTTTTTAAACGGTAATCTTGAAGAGAGTATTTATATGGTCCAACCAAAGGGGTTTATAAAAAAGGGTCGAGAACAAAAGGTTCGTAAGCTTCAAAAATCTATTTATGGATTAAAACAAGCTTCTAGGTCCTGGAATATAAGGTTTGATACTCCGATCAAATCTTATGGTTTTGAACAAAATGTTGATGAACCTTGTGTTTACAAAAGGATCATCAATTTTATTGTAGCATTCTTAGTTCTGTATGTAGATGACATTCTACTCATTGGGAATGATGTAAGTCATTTAACTGATATTAAGAAATGGCTAGCTACGCAATTCCAAATGAAATTTTTGGGAAACACATAA

Coding sequence (CDS)

ATGAATGATGTGGATTGTGACCAATGGATCAAATCCATGGACCTTGAAATGGAATCTATGTATTCCAATTCTGTCTGGACTCTAGTAGAACAACCAAATGATGTAAAACCTATTGGTTGTAAATGGATCTACAAGAGAAAACGGGACCAAGCTGGTAAAACACAGACTTTCAAAGCTCGACTTGTAGCAAATGGTTATACACAAAAAGAGGGAATAGATTATGAAGAAACTTTCTCTCCTGTTGCCATGATAAAGTCGATTAGAATACTCTTATCCATCGCCACTTTTTATGATTATGAAATTTGGCAGATGGATGTCAAGACAGCCTTTTTAAACGGTAATCTTGAAGAGAGTATTTATATGGTCCAACCAAAGGGGTTTATAAAAAAGGGTCGAGAACAAAAGGTTCGTAAGCTTCAAAAATCTATTTATGGATTAAAACAAGCTTCTAGGTCCTGGAATATAAGGTTTGATACTCCGATCAAATCTTATGGTTTTGAACAAAATGTTGATGAACCTTGTGTTTACAAAAGGATCATCAATTTTATTGTAGCATTCTTAGTTCTGTATGTAGATGACATTCTACTCATTGGGAATGATGTAAGTCATTTAACTGATATTAAGAAATGGCTAGCTACGCAATTCCAAATGAAATTTTTGGGAAACACATAA

Protein sequence

MNDVDCDQWIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKARLVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVYKRIINFIVAFLVLYVDDILLIGNDVSHLTDIKKWLATQFQMKFLGNT

Homology

[Close]

BLAST of Cmc04g0104151 vs. NCBI nr
Match: KAA0045356.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 404.1 bits (1037), Expect = 8.0e-109
Identity = 195/221 (88.24%), Postives = 209/221 (94.57%), Query Frame = 0


Query: 2   NDVDCDQWIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKARL 61
           NDVD DQWIK+MDL+MESMYSNSVWTLV+QPN+++PIGCKWIYKRKRDQ  K QTF+ARL
Sbjct: 143 NDVDSDQWIKAMDLKMESMYSNSVWTLVDQPNNIRPIGCKWIYKRKRDQTAKVQTFRARL 202

Query: 62  VANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYM 121
           VA GYTQKEGIDYEETFSP+AMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYM
Sbjct: 203 VAKGYTQKEGIDYEETFSPIAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYM 262

Query: 122 VQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVYKRIIN 181
           VQP+GFI+KG+EQKV KLQKSIYGLKQASRSWNIRFDT IKSYGFEQNVDEPCVYKRIIN
Sbjct: 263 VQPEGFIQKGQEQKVCKLQKSIYGLKQASRSWNIRFDTGIKSYGFEQNVDEPCVYKRIIN 322

Query: 182 FIVAFLVLYVDDILLIGNDVSHLTDIKKWLATQFQMKFLGN 223
             VAFLVLYVDDILLIGN+V HLTDIK+WL TQFQMK LG+
Sbjct: 323 STVAFLVLYVDDILLIGNEVDHLTDIKEWLDTQFQMKDLGS 363

[Close]

BLAST of Cmc04g0104151 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 398.7 bits (1023), Expect = 3.4e-107
Identity = 192/221 (86.88%), Postives = 208/221 (94.12%), Query Frame = 0


Query: 1    MNDVDCDQWIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKAR 60
            MNDVD DQWIK+M+LEMESMY NSVWTLV+ P+DVKPIGCKWIYKRKRDQAGK QTFKAR
Sbjct: 812  MNDVDRDQWIKAMNLEMESMYFNSVWTLVDLPSDVKPIGCKWIYKRKRDQAGKVQTFKAR 871

Query: 61   LVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIY 120
            LVA GYTQKEG+DYEETFSPVAM+KSIRILLSIATFY+YEIWQMDVKTAFLNGNLEESIY
Sbjct: 872  LVAKGYTQKEGVDYEETFSPVAMLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIY 931

Query: 121  MVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVYKRII 180
            MVQP+GFI + +EQKV KLQKSIYGLKQASRSWNIRFDT IKSYGFEQNVDEPCVYK+I+
Sbjct: 932  MVQPEGFIAQDQEQKVCKLQKSIYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIV 991

Query: 181  NFIVAFLVLYVDDILLIGNDVSHLTDIKKWLATQFQMKFLG 222
            N +VAFL+LYVDDILLIGNDV +LTD+KKWL TQFQMK LG
Sbjct: 992  NSVVAFLILYVDDILLIGNDVEYLTDVKKWLNTQFQMKDLG 1032

[Close]

BLAST of Cmc04g0104151 vs. NCBI nr
Match: TYK03644.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 392.1 bits (1006), Expect = 3.2e-105
Identity = 196/222 (88.29%), Postives = 203/222 (91.44%), Query Frame = 0


Query: 1   MNDVDCDQWIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKAR 60
           MNDVD DQWIK+MDLEMESMYSNSVWTLV+QPNDVKPIGCKWIYKRKRDQAGK QTFKAR
Sbjct: 237 MNDVDRDQWIKAMDLEMESMYSNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKAR 296

Query: 61  LVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIY 120
           LVA GYTQKEGIDYEE FS  AMIKSIRILLSIATFYDYEIWQMDVKT FLN NLEESIY
Sbjct: 297 LVAKGYTQKEGIDYEEVFS-FAMIKSIRILLSIATFYDYEIWQMDVKTTFLNANLEESIY 356

Query: 121 MVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVYKRII 180
           MVQP+ FI+KG+EQK+ KLQKSIYGLKQASRS NIRFDT IKSYG EQNVDEPCVYKRI+
Sbjct: 357 MVQPERFIQKGQEQKICKLQKSIYGLKQASRSCNIRFDTAIKSYGLEQNVDEPCVYKRIM 416

Query: 181 NFIVAFLVLYVDDILLIGNDVSHLTDIKKWLATQFQMKFLGN 223
           N  VAFLVLYVDDILLIGNDV HL DIKKWLA QFQMK LGN
Sbjct: 417 NSTVAFLVLYVDDILLIGNDVGHLADIKKWLAMQFQMKDLGN 457

[Close]

BLAST of Cmc04g0104151 vs. NCBI nr
Match: KAA0043610.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 384.4 bits (986), Expect = 6.6e-103
Identity = 187/222 (84.23%), Postives = 203/222 (91.44%), Query Frame = 0


Query: 1   MNDVDCDQWIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKAR 60
           MNDVDCDQW+K+MDL++ESMYSNSVWTLV+Q NDVK IGCKWIYKRKRDQAGK QTFKAR
Sbjct: 1   MNDVDCDQWVKAMDLKIESMYSNSVWTLVDQSNDVKLIGCKWIYKRKRDQAGKVQTFKAR 60

Query: 61  LVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIY 120
           LV  GY +KEG++Y+ETFSPV M+KSIRILLSI TFYDYEI QMDVKTAFLNGNLEESIY
Sbjct: 61  LVGKGYIEKEGVNYKETFSPVVMLKSIRILLSIPTFYDYEICQMDVKTAFLNGNLEESIY 120

Query: 121 MVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVYKRII 180
           MVQP+GFI+KG+EQKV KLQKSIYGLKQASRSWNIRFDT IKSYGFE NVDEPCVYKRII
Sbjct: 121 MVQPEGFIQKGQEQKVYKLQKSIYGLKQASRSWNIRFDTAIKSYGFEHNVDEPCVYKRII 180

Query: 181 NFIVAFLVLYVDDILLIGNDVSHLTDIKKWLATQFQMKFLGN 223
              VAFLVL VD+ILLIGND+ HLT+IKKWLATQFQMK L N
Sbjct: 181 KSTVAFLVLDVDNILLIGNDIGHLTNIKKWLATQFQMKDLEN 222

[Close]

BLAST of Cmc04g0104151 vs. NCBI nr
Match: TYK15984.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 379.4 bits (973), Expect = 2.1e-101
Identity = 184/221 (83.26%), Postives = 199/221 (90.05%), Query Frame = 0


Query: 1   MNDVDCDQWIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKAR 60
           MNDVD DQW+K+MDLEMESMY NSVW LV+ P  VKPIGCKWIYKRKRD AGK QTFKAR
Sbjct: 330 MNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKAR 389

Query: 61  LVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIY 120
           LVA GYTQ+EG+DYEETFSPVAM+KSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESI+
Sbjct: 390 LVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIF 449

Query: 121 MVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVYKRII 180
           M QP+GFI +G+EQKV KL +SIYGLKQASRSWNIRFDT IKSYGF+QNVDEPCVYK+I 
Sbjct: 450 MSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKIN 509

Query: 181 NFIVAFLVLYVDDILLIGNDVSHLTDIKKWLATQFQMKFLG 222
              VAFLVLYVDDILLIGNDV +LTD+K WLA QFQMK LG
Sbjct: 510 KGKVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLG 550

[Close]

BLAST of Cmc04g0104151 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 6.1e-51
Identity = 106/218 (48.62%), Postives = 147/218 (67.43%), Query Frame = 0


Query: 7    DQWIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKARLVANGY 66
            +Q +K+M  EMES+  N  + LVE P   +P+ CKW++K K+D   K   +KARLV  G+
Sbjct: 824  NQLMKAMQEEMESLQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGF 883

Query: 67   TQKEGIDYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQPKG 126
             QK+GID++E FSPV  + SIR +LS+A   D E+ Q+DVKTAFL+G+LEE IYM QP+G
Sbjct: 884  EQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEG 943

Query: 127  FIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVY-KRII--NFI 186
            F   G++  V KL KS+YGLKQA R W ++FD+ +KS  + +   +PCVY KR    NFI
Sbjct: 944  FEVAGKKHMVCKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFI 1003

Query: 187  VAFLVLYVDDILLIGNDVSHLTDIKKWLATQFQMKFLG 222
            +  L+LYVDD+L++G D   +  +K  L+  F MK LG
Sbjct: 1004 I--LLLYVDDMLIVGKDKGLIAKLKGDLSKSFDMKDLG 1039

[Close]

BLAST of Cmc04g0104151 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.3e-40
Identity = 85/213 (39.91%), Postives = 126/213 (59.15%), Query Frame = 0


Query: 7    DQWIKSMDLEMESMYSNSVWTLV-EQPNDVKPIGCKWIYKRKRDQAGKTQTFKARLVANG 66
            D+W ++M  E+ +   N  W LV   P  V  +GC+WI+ +K +  G    +KARLVA G
Sbjct: 949  DRWRQAMGSEINAQIGNHTWDLVPPPPPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKG 1008

Query: 67   YTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQPK 126
            Y Q+ G+DY ETFSPV    SIRI+L +A    + I Q+DV  AFL G L + +YM QP 
Sbjct: 1009 YNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPP 1068

Query: 127  GFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVYKRIINFIVA 186
            GF+ K R   V +L+K+IYGLKQA R+W +   T + + GF  ++ +  ++       + 
Sbjct: 1069 GFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTYLLTVGFVNSISDTSLFVLQRGRSII 1128

Query: 187  FLVLYVDDILLIGNDVSHLTDIKKWLATQFQMK 219
            ++++YVDDIL+ GND   L      L+ +F +K
Sbjct: 1129 YMLVYVDDILITGNDTVLLKHTLDALSQRFSVK 1161

[Close]

BLAST of Cmc04g0104151 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 2.2e-40
Identity = 85/213 (39.91%), Postives = 127/213 (59.62%), Query Frame = 0


Query: 7    DQWIKSMDLEMESMYSNSVWTLV-EQPNDVKPIGCKWIYKRKRDQAGKTQTFKARLVANG 66
            ++W  +M  E+ +   N  W LV   P+ V  +GC+WI+ +K +  G    +KARLVA G
Sbjct: 966  ERWRNAMGSEINAQIGNHTWDLVPPPPSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKG 1025

Query: 67   YTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQPK 126
            Y Q+ G+DY ETFSPV    SIRI+L +A    + I Q+DV  AFL G L + +YM QP 
Sbjct: 1026 YNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPP 1085

Query: 127  GFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVYKRIINFIVA 186
            GFI K R   V KL+K++YGLKQA R+W +     + + GF  +V +  ++       + 
Sbjct: 1086 GFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIV 1145

Query: 187  FLVLYVDDILLIGNDVSHLTDIKKWLATQFQMK 219
            ++++YVDDIL+ GND + L +    L+ +F +K
Sbjct: 1146 YMLVYVDDILITGNDPTLLHNTLDNLSQRFSVK 1178

[Close]

BLAST of Cmc04g0104151 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 163.7 bits (413), Expect = 2.4e-39
Identity = 85/216 (39.35%), Postives = 134/216 (62.04%), Query Frame = 0


Query: 5    DCDQWIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKARLVAN 64
            D   W ++++ E+ +   N+ WT+ ++P +   +  +W++  K ++ G    +KARLVA 
Sbjct: 902  DKSSWEEAINTELNAHKINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVAR 961

Query: 65   GYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQP 124
            G+TQK  IDYEETF+PVA I S R +LS+   Y+ ++ QMDVKTAFLNG L+E IYM  P
Sbjct: 962  GFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLP 1021

Query: 125  KGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVY---KRIIN 184
            +G         V KL K+IYGLKQA+R W   F+  +K   F  +  + C+Y   K  IN
Sbjct: 1022 QGI--SCNSDNVCKLNKAIYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNIN 1081

Query: 185  FIVAFLVLYVDDILLIGNDVSHLTDIKKWLATQFQM 218
              + +++LYVDD+++   D++ + + K++L  +F+M
Sbjct: 1082 ENI-YVLLYVDDVVIATGDMTRMNNFKRYLMEKFRM 1114

[Close]

BLAST of Cmc04g0104151 vs. ExPASy Swiss-Prot
Match: Q12491 (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.9e-13
Identity = 64/224 (28.57%), Postives = 107/224 (47.77%), Query Frame = 0


Query: 7    DQWIKSMDLEMESMYSNSVWTLVE--QPNDVKP---IGCKWIYKRKRDQAGKTQTFKARL 66
            D++I++   E+  +   + W   +    ND+ P   I   +I+ +KRD      T KAR 
Sbjct: 1263 DRYIEAYHKEINQLLRMNTWDTNKYYDRNDIDPKKVINSMFIFNKKRD-----GTHKARF 1322

Query: 67   VANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYM 126
            VA G  Q       +  S      ++   LSIA   DY I Q+D+ +A+L  +++E +Y+
Sbjct: 1323 VARGDIQHPDTYDSDMQSNTVHHYALMTSLSIALDNDYYITQLDISSAYLYADIKEELYI 1382

Query: 127  VQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSY-----GFEQNVDEPCVY 186
              P      G   K+ +L+KS+YGLKQ+  +W   ++T IKSY       ++     CV+
Sbjct: 1383 RPPPHL---GLNDKLLRLRKSLYGLKQSGANW---YET-IKSYLINCCDMQEVRGWSCVF 1442

Query: 187  KRIINFIVAFLVLYVDDILLIGNDVSHLTDIKKWLATQFQMKFL 221
            K         + L+VDD++L   D++    I   L  Q+  K +
Sbjct: 1443 KN----SQVTICLFVDDMILFSKDLNANEKIITTLKKQYDTKII 1470

[Close]

BLAST of Cmc04g0104151 vs. ExPASy TrEMBL
Match: A0A5A7TTA2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001350 PE=4 SV=1)

HSP 1 Score: 404.1 bits (1037), Expect = 3.9e-109
Identity = 195/221 (88.24%), Postives = 209/221 (94.57%), Query Frame = 0


Query: 2   NDVDCDQWIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKARL 61
           NDVD DQWIK+MDL+MESMYSNSVWTLV+QPN+++PIGCKWIYKRKRDQ  K QTF+ARL
Sbjct: 143 NDVDSDQWIKAMDLKMESMYSNSVWTLVDQPNNIRPIGCKWIYKRKRDQTAKVQTFRARL 202

Query: 62  VANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYM 121
           VA GYTQKEGIDYEETFSP+AMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYM
Sbjct: 203 VAKGYTQKEGIDYEETFSPIAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYM 262

Query: 122 VQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVYKRIIN 181
           VQP+GFI+KG+EQKV KLQKSIYGLKQASRSWNIRFDT IKSYGFEQNVDEPCVYKRIIN
Sbjct: 263 VQPEGFIQKGQEQKVCKLQKSIYGLKQASRSWNIRFDTGIKSYGFEQNVDEPCVYKRIIN 322

Query: 182 FIVAFLVLYVDDILLIGNDVSHLTDIKKWLATQFQMKFLGN 223
             VAFLVLYVDDILLIGN+V HLTDIK+WL TQFQMK LG+
Sbjct: 323 STVAFLVLYVDDILLIGNEVDHLTDIKEWLDTQFQMKDLGS 363

[Close]

BLAST of Cmc04g0104151 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 1.6e-107
Identity = 192/221 (86.88%), Postives = 208/221 (94.12%), Query Frame = 0


Query: 1    MNDVDCDQWIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKAR 60
            MNDVD DQWIK+M+LEMESMY NSVWTLV+ P+DVKPIGCKWIYKRKRDQAGK QTFKAR
Sbjct: 812  MNDVDRDQWIKAMNLEMESMYFNSVWTLVDLPSDVKPIGCKWIYKRKRDQAGKVQTFKAR 871

Query: 61   LVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIY 120
            LVA GYTQKEG+DYEETFSPVAM+KSIRILLSIATFY+YEIWQMDVKTAFLNGNLEESIY
Sbjct: 872  LVAKGYTQKEGVDYEETFSPVAMLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIY 931

Query: 121  MVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVYKRII 180
            MVQP+GFI + +EQKV KLQKSIYGLKQASRSWNIRFDT IKSYGFEQNVDEPCVYK+I+
Sbjct: 932  MVQPEGFIAQDQEQKVCKLQKSIYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIV 991

Query: 181  NFIVAFLVLYVDDILLIGNDVSHLTDIKKWLATQFQMKFLG 222
            N +VAFL+LYVDDILLIGNDV +LTD+KKWL TQFQMK LG
Sbjct: 992  NSVVAFLILYVDDILLIGNDVEYLTDVKKWLNTQFQMKDLG 1032

[Close]

BLAST of Cmc04g0104151 vs. ExPASy TrEMBL
Match: A0A5D3BX45 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00740 PE=4 SV=1)

HSP 1 Score: 392.1 bits (1006), Expect = 1.5e-105
Identity = 196/222 (88.29%), Postives = 203/222 (91.44%), Query Frame = 0


Query: 1   MNDVDCDQWIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKAR 60
           MNDVD DQWIK+MDLEMESMYSNSVWTLV+QPNDVKPIGCKWIYKRKRDQAGK QTFKAR
Sbjct: 237 MNDVDRDQWIKAMDLEMESMYSNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKAR 296

Query: 61  LVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIY 120
           LVA GYTQKEGIDYEE FS  AMIKSIRILLSIATFYDYEIWQMDVKT FLN NLEESIY
Sbjct: 297 LVAKGYTQKEGIDYEEVFS-FAMIKSIRILLSIATFYDYEIWQMDVKTTFLNANLEESIY 356

Query: 121 MVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVYKRII 180
           MVQP+ FI+KG+EQK+ KLQKSIYGLKQASRS NIRFDT IKSYG EQNVDEPCVYKRI+
Sbjct: 357 MVQPERFIQKGQEQKICKLQKSIYGLKQASRSCNIRFDTAIKSYGLEQNVDEPCVYKRIM 416

Query: 181 NFIVAFLVLYVDDILLIGNDVSHLTDIKKWLATQFQMKFLGN 223
           N  VAFLVLYVDDILLIGNDV HL DIKKWLA QFQMK LGN
Sbjct: 417 NSTVAFLVLYVDDILLIGNDVGHLADIKKWLAMQFQMKDLGN 457

[Close]

BLAST of Cmc04g0104151 vs. ExPASy TrEMBL
Match: A0A5A7TK28 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G00480 PE=4 SV=1)

HSP 1 Score: 384.4 bits (986), Expect = 3.2e-103
Identity = 187/222 (84.23%), Postives = 203/222 (91.44%), Query Frame = 0


Query: 1   MNDVDCDQWIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKAR 60
           MNDVDCDQW+K+MDL++ESMYSNSVWTLV+Q NDVK IGCKWIYKRKRDQAGK QTFKAR
Sbjct: 1   MNDVDCDQWVKAMDLKIESMYSNSVWTLVDQSNDVKLIGCKWIYKRKRDQAGKVQTFKAR 60

Query: 61  LVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIY 120
           LV  GY +KEG++Y+ETFSPV M+KSIRILLSI TFYDYEI QMDVKTAFLNGNLEESIY
Sbjct: 61  LVGKGYIEKEGVNYKETFSPVVMLKSIRILLSIPTFYDYEICQMDVKTAFLNGNLEESIY 120

Query: 121 MVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVYKRII 180
           MVQP+GFI+KG+EQKV KLQKSIYGLKQASRSWNIRFDT IKSYGFE NVDEPCVYKRII
Sbjct: 121 MVQPEGFIQKGQEQKVYKLQKSIYGLKQASRSWNIRFDTAIKSYGFEHNVDEPCVYKRII 180

Query: 181 NFIVAFLVLYVDDILLIGNDVSHLTDIKKWLATQFQMKFLGN 223
              VAFLVL VD+ILLIGND+ HLT+IKKWLATQFQMK L N
Sbjct: 181 KSTVAFLVLDVDNILLIGNDIGHLTNIKKWLATQFQMKDLEN 222

[Close]

BLAST of Cmc04g0104151 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 379.4 bits (973), Expect = 1.0e-101
Identity = 184/221 (83.26%), Postives = 199/221 (90.05%), Query Frame = 0


Query: 1   MNDVDCDQWIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKAR 60
           MNDVD DQW+K+MDLEMESMY NSVW LV+ P  VKPIGCKWIYKRKRD AGK QTFKAR
Sbjct: 720 MNDVDKDQWVKAMDLEMESMYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKAR 779

Query: 61  LVANGYTQKEGIDYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIY 120
           LVA GYTQ+EG+DYEETFSPVAM+KSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESI+
Sbjct: 780 LVAKGYTQREGVDYEETFSPVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIF 839

Query: 121 MVQPKGFIKKGREQKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVYKRII 180
           M QP+GFI +G+EQKV KL +SIYGLKQASRSWNIRFDT IKSYGF+QNVDEPCVYK+I 
Sbjct: 840 MSQPEGFITQGQEQKVCKLNRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKIN 899

Query: 181 NFIVAFLVLYVDDILLIGNDVSHLTDIKKWLATQFQMKFLG 222
              VAFLVLYVDDILLIGNDV +LTD+K WLA QFQMK LG
Sbjct: 900 KGKVAFLVLYVDDILLIGNDVGYLTDVKAWLAAQFQMKDLG 940

[Close]

BLAST of Cmc04g0104151 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 179.1 bits (453), Expect = 3.9e-45
Identity = 86/217 (39.63%), Postives = 139/217 (64.06%), Query Frame = 0


Query: 9   WIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKARLVANGYTQ 68
           W  +MD E+ +M +   W +   P + KPIGCKW+YK K +  G  + +KARLVA GYTQ
Sbjct: 98  WCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQ 157

Query: 69  KEGIDYEETFSPVAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQPKGFI 128
           +EGID+ ETFSPV  + S++++L+I+  Y++ + Q+D+  AFLNG+L+E IYM  P G+ 
Sbjct: 158 QEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYA 217

Query: 129 KKGRE----QKVRKLQKSIYGLKQASRSWNIRFDTPIKSYGFEQNVDEPCVYKRIINFIV 188
            +  +      V  L+KSIYGLKQASR W ++F   +  +GF Q+  +   + +I   + 
Sbjct: 218 ARQGDSLPPNAVCYLKKSIYGLKQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLF 277

Query: 189 AFLVLYVDDILLIGNDVSHLTDIKKWLATQFQMKFLG 222
             +++YVDDI++  N+ + + ++K  L + F+++ LG
Sbjct: 278 LCVLVYVDDIIICSNNDAAVDELKSQLKSCFKLRDLG 314

[Close]

BLAST of Cmc04g0104151 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 79.0 bits (193), Expect = 5.5e-15
Identity = 35/86 (40.70%), Postives = 53/86 (61.63%), Query Frame = 0


Query: 9   WIKSMDLEMESMYSNSVWTLVEQPNDVKPIGCKWIYKRKRDQAGKTQTFKARLVANGYTQ 68
           W ++M  E++++  N  W LV  P +   +GCKW++K K    G     KARLVA G+ Q
Sbjct: 40  WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQ 99

Query: 69  KEGIDYEETFSPVAMIKSIRILLSIA 95
           +EGI + ET+SPV    +IR +L++A
Sbjct: 100 EEGIYFVETYSPVVRTATIRTILNVA 125

The following BLAST results are available for this feature:

BLAST of Cmc04g0104151 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045356.1	8.0e-109	88.24	gag/pol protein [Cucumis melo var. makuwa]	[more]
ADJ18449.1	3.4e-107	86.88	gag/pol protein, partial [Bryonia dioica]	[more]
TYK03644.1	3.2e-105	88.29	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0043610.1	6.6e-103	84.23	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK15984.1	2.1e-101	83.26	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0104151 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	6.1e-51	48.62	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q9ZT94	1.3e-40	39.91	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	2.2e-40	39.91	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P04146	2.4e-39	39.35	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q12491	3.9e-13	28.57	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of Cmc04g0104151 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TTA2	3.9e-109	88.24	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G0013...	[more]
E2GK51	1.6e-107	86.88	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5D3BX45	1.5e-105	88.29	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G007...	[more]
A0A5A7TK28	3.2e-103	84.23	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold320G0048...	[more]
A0A5A7TZD0	1.0e-101	83.26	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]

BLAST of Cmc04g0104151 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	3.9e-45	39.63	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	5.5e-15	40.70	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 23..222 e-value: 2.8E-65 score: 220.3
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 6..221
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 23..213

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0104151.1	Cmc04g0104151.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding