Cmc04g0103171 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0103171
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	E3 ubiquitin-protein ligase RNF4-like
Location	CMiso1.1chr04: 20193284 .. 20209682 (+)
RNA-Seq Expression	Cmc04g0103171
Synteny	Cmc04g0103171

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAGGCACGTGCGATGGAAAGAGAGGGAAGAAAGCGAGCAAACACGTGTCACACAATTATTGGACGTGAGTAAAAGACGTGGCGCCTTTCAGGCTCGTCTCCTCTTTCACTCTCCCCGCAAGAACCCTGGAACTTCCCTGTGCCGTGTCTCCATTCTCGTCCTCAATCTCAATCTTTTTCTTATTTTCTCCCTTTATAATGCCGACTTTTCCTTCTCTTTCCCTTCCATTTCTCAACCCTTAGAATCCTGACTACAAATATCACAAACCCTAGAAGAACTAATCATATAATCAAATCTAATCTATCTAACCCCTCAAATTTGGTAGATATTTTTTCAACCGCTTATTTCAGGTACCCCATCTTCAGATTCGACGTATTTTTAATTTTTTTTTAATTGGGGCATTTTATTTTGTTGATCTTAGTTATGTTTTCTGGGGTTTATTTTTGGAGAAAAAATTGTCTTTACGAATGTTTTGACCGATTTGAGATTGAAGACTTGATGTTTTGGTTCCTGTAGTTGGGGCAAAAGATCCGATGGAGTATGTATTGTTTGGAGATGGATTTTTGTGATCGGGTATGAATTTTGTGGTTTAGTGTAAGTCTTATGATTAATCCGAAGATTTGATGTATTTGAATCGTTTGGTGTAACTGATTATTAATGAATGTTTAGGGGGAAAGGGTAGTGGTTGATTTATTATAGATGTGGCGTTTTCTTTTTAATTATAAATCTGGGAACGAAGAGTTTGTTGATTGAGAAGGATTATATTGTTGTCTTGTTCTGAGTTGCAGGGATTTGTTTCTTGTGTCCCGCCCCCCCCCCCCCTCCCCCCCGATGGAGTATGTATTGTTTGGAGATGGATTTTTGTGATCGGGTATGAATTTTGTGGTTTAGTGTAAGTCTTATGATTAATCCGGAGATTTGATGTATTTGAATCGTTTGGTGTAACTGATTATTAATGAATGTTTAGGGGGAAAGGGTAGTGGTTGATTTGTTATAGATGTCTTGTTCTGAAGTTTTTGTGTGTCATTTGGGCGAATGATAACTGAAGTTCTTTTTAGTTTTTTTCTTATCTAAGGTTCTCAGACTGTTATTGAATGGTGGTAGTTGTGGTTTTTCTCTTTGTTGAAAGCCATCAATTTCTTTCTCAAATTTTCCTTTGTTCACTTTATTTTACATGATACATCAGCTGGGGTTTTATTGCATTCAGATTTTAATATATTGGGCTCATGTATAGCAGGTTGCTGAGGAGCTTGAAGATATAGATGAGTACTCAGGCTATGAGGGGACATAACACAAGAGGTTATCATCGTAGGAAATCATTGGACTTGGACCTGAACAGCATGCCACCAACTGAGAACCGAGATCAAGGAGAAACATCTCAACTGCGGCTTCAGGATGCACAGGTTAATCAACAACAGCCTGTACAGCCTGCAATGATCGACATTGAGGCCATTGATGACGATGTCATTGAATCATCCGCCAGAGCTTTTGCTGAAGTATGTTTCCTGTAGCTTCTCTTGAATGTTTAAATACTCACGGTTGTTCTATCCTTATTATATTCTTTTTCTATTGATTCTGATCTTTATTTCATGAATTCCATTGTTTATCTGTTAGGCTAAAAATAAATCCAGACGAAATGCTAGGAAGAATGTAGTTGACGTGGATGCAGGTATGTTTATTCCAGCTGGTGGAGCACTATAGCTAAGCAGATTTTTTTCATTACTTAGAAATTGGTAGCATGTTGGTCTATCAATTTTATTGTCATATCACTTTCAAATTTGCAATGCAATTTTTTTAATTTTATTCTATATAAGCTTTTTTTAATAAATTCTAAAGGTATGCAGTTTTCTGCTTGTTCATTATGAAAGGAAGCTTGGAAATTTGTTATATAAGAAAATTGAACTTTGTTATCAATTCGGAAAGTAGTTCGTTAGGATTGGTGGTCACAGAAGTAGCATTTGAAACAGCCTTTAGATTTGGTGATTCCTGTTTTCAAACATACCCACATTATGACGATCTTAATTTTAGGATGATTAAGAAGTTTGACATCTTGAAGCATTAATAGCTTAGAAATTGTGAAGGTACAGAAGGTGTAGTTGTATTCCATCATTGAGATGTCTTCTAAATCTTAGCATCCATTAGTAGTTAGACCCATTCTAGCACTGATTTTTTGAAGACCATGTACTCCTGTCTAGAGCATAGTAAGAGAAATTAATAGAAGAAAGATTTCCAGTCAATCCGTGCATCCTTCCCAAAATACATCATTATACCAAATTTCCAATGACCATCTAGGTTGGAGTCAGTGTTTTGAAAGGCGCGCTGAGGCGCGCGCCTAGGCGCAAGGCGCACCCCCAGCGCTTCTCTGTGGGTAGGCGAGGCGCCGATGGAAAGGCGCGGCTGAGGCGCGCGCCTTCCTCAAGGCGCCGTAGGCGCAAAAAGCCCACAGGCGCGGGCTTTATAACGTGGGCTGGGCTTAATTAAAAAAAACAAATATTTACCTATTTTAAACCTATTTAACTTTTACTTAATATATTCACCTAATATATTTACCTAGTACGTGTAACGTGACTGTGAAGAAACGAAACGACGGCTCGGCTCGACTTGAAGATGAAGACAACGAAACGATCGACTGCTGCTTTGTTTTCTTCTTCTTCTTAAAGATCGACTGCCATTAAAAATCTTAATAAAAAAAAATCCTAAGGTGTGCTGCTCTGTTTTCTTCTTCTTCTTTCTCTTTTTCTTCTTTTTCTTTTTCCTTTGGTGCTGACTGCTGTCATTAAAAAAAATCCATTCTTCTTCTTCTTCTTTTTCTTTTTCCTTTGGTGCTGACTGCTGCCATTACTGTTGTGCTGCCAGCCTCCCATTACTCTGTTTTTTGCCATCCAATCTTCTTTTTTGGTGCTTCTTTTGCTGCCATTAGATTACTATTAAAAAACATGGCTGATGAAAGTTCTAAAAAAGATCCGGCATGGAAATATGGTCGATTGCAAAATGAACAAGATATAAATACGTTTGTCTGTGGATTTTGTTCGAAAGTAACAAAAGGAGGGGTGTATCGATTGAAACAACACCTCGTTGGTGGTTATAGAAATGCCATAGCTTGTAAAAAATGTCCGGATCATGTAAAGGAAGAAATTAGAGATTACATGTCCAAGAAAAAGGAGATCAAAGAACAAAGAAATTTGATTGTGGACATTGATGTACAAGATTACGGTATGGAGGATGAAGATGAAGGGAGTATTAGTGTAAATAACAGAGCAACATCAAGTGGCTCGAGCTTGAAGAAGCCAAGACAAAAGGGTCCAATGGATGCATTTTTTACTCCCAATCCAGAAAGTGTGGTTCAAAATAGAAAGAACGACAAAGGAAAACAAACTTCGTTGAATGCGGCGTACAAGAAGGAAATGAGGGAGCACACCATCCAAAGAATTGCTCGATGGTTTTATGATGCAGGAGTGCCTTTGAATGCTTGCACATATGATAGTTTTGCCCCTATGATTGAGTCAATTGGGCAATTTGGTCCTGGATTGAAACCACCAACATATCATGAGTTGAGAGTCCCATGTTTGAAGAAGGAATTAGAAGCAACAAATGAGTTGATGAGCAGCCATAAAGCAGAGTGGGCTAAGGTTGGATGCACTGTTATGGCTGATGGGTGGACCGATAGAAGAAATAGGACATTGATTAACTTTTTAGTTAATAGTCCTAAGGGCACCATGTTTATTGAGTCCATCGATGCTTCATCTTATGTGAAGGATGGAAAGAAGATGTTCGAGCTACTTGACAATTTTGTAGAGCGCATTGGAGAAGCAAATGTTGTACAAGTAGTTACTGATAGTGCCTCAGCAAATGTGATGGCAGGTAAGAATGTAAACTATTATGCTATTAGGGAGATTGTTTGATTTAGTGAGTTCTATGCTAAATGTATACTTATTTTCTTTGTTAATAGGGAGATTGTTAGAAGCAAAGCGACCACAATTGATATGGTCTCCATGTGCTGCTCATTGCTTAGATTTAATGTTGGAGGATATATACAAGATCTCCAATATTCGCAAAGCATTGAAAAGAGGCATGGAGATTAGCAACTTCATCTATGTTCGTCCTGGATTATTAAACATGATGCGACGATTTACTAACCAAAAGGAGTTAGTTAGACCAGCTAAGACTCGCTTTGCTACTGCTTGCATTACATTATCGAGTATACATCATCAAAAGAACAACTTAAGGAAGATGTTTACTTCAGATGAATGGAAGGATAGCAAATGGAGCAAGGAGCAACAAGGAAGGCGAGTAGTTCAAACTATTTTGTTGGCTAGTTTTTGGACTACAATTGTGTTTGCTCTTAAAGTGTCTGGCCCACTAGTTTGAGTTCTTAGATTGGTTGATGGCGAAAAGAAGCCACCTATGGGATATATTTATGAGGCCATGGATAGAGCTAAAGAAGCTATTGCTAAGTCGTTCAATAATAATGAAGAAAAATACAAGGACATTTTCACCATAATTGATAGAAGATGGGAGCTTCAGTTGCATCGTCCTCTGCATGCAGCGGGGTATTATTTAAACCCGTCATTCTATTATTCGAATCCTAGCATCCAAGAGGATGATGAAATAGTTAATGGGCTCTACTCATGCATAACAAAAATGGTTGCTTCATTAGACATCCAAGACAAAATACTTGCAGAACTAAGCAAGTATAAGAGAGCTGAAGCATTGTTTGGACAACCTTTAGCAATCAGACAAAGGGACAAAATATCTCCAGGTAAATTTCAACTAACCGATTAGTCGATTACTCAACAATAATTATTTTATTAATATATATTTTTTGCCTATAGTGGAATGGTGGGATAATTTTGGACAATCAACTCCAAACTTGCAAAAGTTTGCTATTCGCATTTTAGGTCTTACTTGTAGTGCTTCTGGATGCGAACGTAATTGGAGTGTGTTTGAGTAGGTTAGCTTTCCTCTTCTTTACATGCGAATGTAATTTTGTTGATTCACTGGCAGTGACAATGACTTTTCTAATTTTGTAGCTTCATAGCAAGAAACGAAATAGGCTTGCTCAAAGTCGTTTGAATGATTTAGTGTTCATCAAATACAATAGAGCATTAAAACGTCGATACAACCTTCGAGATATCGTCGATCCCATCTCTTTAAGAGATATTGATGATAGTAACGAATGGTTGATTGGAAGATTGGATGATGATTCTGAGGAGGAGGATGAGCTGGTATTTGACGATGATATTTTAACGTGGGGTGATGTTTCAAGAGCTGCCGGAGCAAAAGAACCAACCTTCTATTCTAGAGCTAGGGCCTCAGGAGCGACTAATGTTTCATGTTCATCCTCGTCTACCACACAACCCCACACCCAAACAAATAAATTTGGATGACTCTGATCAGGAAGAAGAAGATACCGATGGCTATAAGTCCAACGAAGGAGTGAATGAAGATGAGGATCAATTTAGTGATGATGAGTTTGATCTTTAGGAATGAACTTCTATTGTGTTTTGTTTTTTGGGTAGAAAACTAATATTATAATATTTTATACATTAGAGTTAAATCTCATTTCTATATTGGTTATTTACTTATATTTTATACATTGTTGTTCCTTTCAATTTTGTATGTATATATATATATATATATCTTTTTTTTTTATATAGTGCGCCTCATGAAAAAAAGCCCGCGCCTTTTTGTGCGCCTTGCGCCTAGGCCCCAGAGGACCATTGCGCCTTAGTGCGCCTTGAGCCTTTAAAAACACTGGTTGGAGTTAATGATCATAGTAGTTCTTAGCTTGGATATCTGTAACCCCGGTTTGTAGTTGCTTGTCTACAGTCTGCTATTAGCAAGCCTCCATAATTCTGCCATTACATACTCTTTTGCTGTGACATGAGTGTATTCCACATTAGCATCACTTAGAATGGGTACCTTCTTAGCCATTTGGTTGAAAAATTGTTGTTGAGTTTAGTCAGCTTCTCTATTAAATCTTTGGACTTCATCTTTGCATGACTGAACATTGAACTATCCATTTTTTTAATAAGAAACTGATAGACCCCCTATCATCCAGCAATACAGCGGAAGAGGAAAGATAGCCAAGAAATAGATAAGTCTGTTAAAAAATCTGTTAGAGAAGTCCGTTATAAAAGTTAGTTAGATGAGTAGCTTAAATAGCACCTTAGTCTGAAGGAATAGGCAGTGAAGTTTTGAGAAGAGTATTCCTTTATTCTTGAAAGATAGAATAACAAGGAGAGAGAAATCTACTTTCTGTGTAAGATTTCTATTATCAACAAAGCATTCATACTTGAAATACAACTGAAAAGTACAAAAATCCTATTCCACCCTTTGGAAGCGAACTTGCAGTGTAAGAATAAATTGTCTAAGGTCCCTATCTCCTTTTGGTAGAGAAGACACATGGAAGGGGAAAGAGACCAATTAGGGAACTTTTTTGGAGCTCATCATGGTTGTTCAAAGCTTCTATAAGCAAGTGACCAAAGGGAAAACTTCATTTTTCTAGGAATTTTCAGTTTCCAAATAAGATTGACCAAAGGGAGGTTAATTTTTGGGGCTCCTGTAGCCATCTTAAGGAAAGTGAACTTGGTTGAAAACCGACTAGAAGCCTTCAACCACGTCGAACTATCCATGAAAATGAATATGTGATCCGTACTTCCAACATCCACGGAAATAAGGATCTCAAATTCATTCACTCACCTATTCTCATATTCACAAGGTAGAAGACCCTAGTTCAATTTATTGCGCTTAACGGGAAGTGGAAAGTGATTGGGGGTGTTATGTTACTTCTAGTATGTCGGTGTATTCTTTCATTTTTTTCAATGGAAGTCTATGTTTTTTCATTAAAAAAATATTATTAGTTATTGAAAAGAAGAAGATAAGATATATGTGGAAAACCCTAGTACAGGGAGAAAAAATCATGATAGAAGCCGCTCTTATTATTTTCTAATAATCAAAAGAGTACAAGAGGGAAGAATATATGTAGGCTCTAATAAGCACTAATAGTAAAGGAAATAATACTAGGGTACAATAAATTACACAAATACCCTTGCGGCTAATAAACATTCAACTAGTCCCTAATTTCAAACACTCCATAGGCCCAACTTGCTAACACTATAGTCAAAGCTCAGTGTTAGTAATCCTTTGGTGAGGACATCGACAATTTGTTGACTAGAAGGAATGTATAGGATACAAATACTACCATTGTCAAGTTTCTCCTTTATAAAATGTCTGCCTATCTCCACATGTTTCGTTTGTGATGTTGAATTGGGTTATTGCCGATGCTTAAGCAGCTTTGTTGTCACAGAAGAGCTTGGTAGGTAACTCACAATCTTGGTGAAGATCAGATAAAATTTTCTGTCGCTAGATTTCGTCACAGATTCCCAAACTCATAGCTCTGTATTCGGCTTCAACACCAATCCTAGCAACAATACCAGTCCTAGCAACAACACCTTGCTTCTTACTCCATCAAGTAACAAGATTACCCCTTACAAAGGAATAGTATCATGAAGTGGACTTTTTGTCAGTAACTGATCCTACCTAATCAGAGTTGGTATGAGCCTTAATACATTTTTTGTCAGTTTTTCAGAACATCAGACCTTAACCTAGAGTAGTTTTTAGTATCTTGAAATGCGATTCACAGCTTCCATGTTTTCTTCCTAGGGTGCTTGCATGAACTGACTAACAATGCTAACTGCATAGGAGATATTTGGTCTTGTATGAGATAGACAAATCAACTTTCCCACTAAATGGTGATACTTCTCTTTGTCAATAGGAACTTGTCACTAGAATTTCCCAGTTTTGCATTGAATTGAGTCTGCATCCAGCTAGTCATACCTCTTTCCTTTAACAAGTCAAGAGTATACTTCCTTTGTGAAACAGAGTTCCCTTCCCTCGATCGTGCCACCTCCATCCCAAGGAAGTACTTTAGATTCCCTAGGTCTTTGATTTCAAACTCGTCACCCGTTTTCTTTTTTCAACCTGATAATCTCAACAATATCATCTCCTAACAACACAATATCATCGACATACACGATCGACACAACAATTGTCCCAGATGTGTGATCAGAATGTTCCTGAGAGAAGCCTTGAGATCTAACAAAGGTGGTAACTCTATCAAACCATTCCCTGGGAGATTGTGTCAAGCTATAAAAAGATTTTCGAAGCTTACAAACCTAGTGGTCAAATTGAACTCCAAAGCCTGAAGGAGGACTCATGTACACTTCTTCCAAATCACCATTTAGGAAAGCATTTTTTACATGAAGCTGATAGAGAGGCCACTCTTTATTGACTATAACAAACAGAAGAACCTTGATTGTGTTTAACTTGCCACATGAGAAAAAGTCTCTAAATAATTGGGAGTGAACCCTTTTGCAACAAGCCTAGCCTTGTACCTGTTTAAGGTCCCATTTGCTTTGTACTTTAGAGCAAACATCCATTTGCATCCCACTGTCTTGTGCCCTTTAGGAAGAGTGCAAAGATCCCATGCCTTATTCTTCTCAAGTGCTTCCATTTCTTCCATGACAACCATCTTCCACTCAGGACTTCTCATAGCTTCATTTATGTTCTTTGGTATTATTGCAGTGTCGAGACTTGTAGTGAACACCATATTACTATAAGACGTGTGATTACGCATAGAGTGCTTCGTACAAGATCTAGTACCTTTTCTGAAGGCAATGGGCATGTCAAGAAAGGGATCATGGCTGTTTGGCTTGTTTGAGTCATCCGTGCTAGTCTCAAGCACCTACGTGTTTGTTAGAGTTACATCACTTCTGGCAGTCTTATTCTCTTCTGGAACTGTCATATTAGTCTTGTCATCCTTAACCACATTAACAATATCATCCTCAACACACAAGTTATCATGATCATGTTCAGTAGTACTTGAGCCTGTGTTGGTTCAGATTCATGAACTGGAGCCGGCAGAGCAATAGGGGGCCCCATTTCCTTTCTAAGATTATTACTTTAGTAAGTTATCCGGGGGACTTGGTTGGTGGGTAAAACAATGTCATGGAGGATGGGTTCAGAAGGCTCAGTAGGGGCTATAGGCATGAAAGGAACGGGCCGGTTAGCCTCTTCACTACTACTCTCTCCTTGAAGATGGCTAACAGGAAAGAAGGTGACGTCCATGGACACAGACTACTTTTGAAGAGGAGGATGGTATTAAGGATACCCCACAAAAACACATGATTGAACACGAGGAGCAAATTTAGTGTTGTTAGGCCTATGACTGTGAACAAAGGTAGTGTACTCGAACTCACAGAGAGGAACATCAGGAATAAGCCGTGTGGAAGGGTAGAACTCCTTGAGGCATTCAAGAGGTGTTCGGAGGTGGAGGACCTAAGATTTGCATTCTATTCATAAGATGTCGCAATAAGGACTACATCCCCCATAAGTTAGAAGGAAAAGAAGTTGACAACATGAGAGAATGAGCAACCTCAAGGAAGTGAAGGTTTTCCGGTTTAGCCACGTCGTTCTGTTGCGAGGTATAAGCACAAGAACTCCAGTGAACAATCCCTTTAGAGGACAAAGTCTCAATTAGGAACTCACAACCATTATTGGTATGCAAAGTTGCAATTTTAGCGTTGAAATTGTGTCTCAGTGGTTGTGTAAAATTGTTGAAATATTGAAGAGACCTCAGATTTATCAGTAGGGAGAAAGACCCAAGTTAGATGAGAATGATCATCAATACAGGTTACAAACCAATGTTTCCCCGAAGCGGTAGTGACCTGTGAAGGCCCTCAAATATCATTATGAAAGAGGGTAGATGGTTGGGTAGGTTTGCAGGGTTGAGACGCAAACGAGACTTTGTGCCGTTTTGCACGATATACACACATCACAAGACAAAAAGGAGATATCTACTTTAGAAAATAAGTTAGGTAATAGTTGTTTCATATATTGAAAGTTTGGGTGGCCACGATGAAAGTGCCACAACATACAATCTTTTTCAGAAGTAGAAAAATAAGAGGACAACAGACTAGTGTCCTACAACAATCCCTAGACAAAGCATCATCATCAAGGAAATAGAGCCCCCTAGTATGCCTGAAAAGAAATAGTATCAGGTGAGAAGACAGCTTGACAGTGTAGATTCCTAGTTATCTTACTGATAGATAGTAAATTGTAAATTATCTTAGGCACATGTAACACATTCTGTTAAATGAGTCCATCAATAGAGGAAATATGACCCGCCCGCAATAGGAGCAAAGGACTTGTCTGAAAATCCTAATTCTTTCATTGCCAACACATGGGAGGTATGATATAAAATGTTAAAGAGGGTCCAGTTAAATGGATAGTAGCACCTGAATCAAGTATAAGAGTTTCTTCCCATCAGTGCTGCTAAGACTAAAGGATTGGGATGTACCTAATTGTGGAATGGCTCCAAGAGGAGTACGAAGATTGTCTTGACTTGACTCCCTCCAGGGGTTGGGGGTTGTGAAGTTCCAGTTTGTTTCACCCATAAAAGCCCTACCAAAATTATGCTTGTCATTTGACGGACGTTTCTTACCATTTGGTGGTCAATCATGTAACTTCCAGCAACGGTCTTTCGTATGCTAAGGTTTCTTACAATGCTCACACACCTACATACTTCCTACTTTGAGGTTCCATACTGCTATCTTAATAGATAGAGACCACAAGAAATTATTCCTATGGATTTTCCTATGGAGCTAGATAAATAATTTGTTGCAGTTAAGGTAGAGAAAGAAGTTCTCCGAATACATCTTTAAGACTAAAGGAGTGGCAGAATTTGTGGAGTTTGTGGTAGCTCCTAGAGCTGCCTCAATGATTTGTTGCTGAAAACTTGTCTAAAGATTAAACAATTTTTGTGTAACCATTACTGGAGATAAAACAACAAAACCTTGATGTTCATAACTAGGCGGCGCATGATGAGGAAAACGCAGTTCTTGTGAGAAGCTTGTTTCTGCAATAGAGAATTTACCTTTGTGGTAGGCGGATGACACACTAATCTCGTTTTCATGATGTATGTTTGTTAGAGTTTCCATCAAAGGGTTGTGACGGTGCTAGAGTTGAATGGATATGCAAGGATGGAAGATAACAATCAACGACAGCTTGGACAGTACTGATAATATCGGAGTGGAAAAAACGGCGGCTTTAGCGAATTCTCCGACGATTGCTCCAGTGGTGGCAGTTTTGATGACTGCTCCGGCGGCAGTAGTTGTGGCTGAGGCAGGGCTGGTGCAAAACTAAGGTCATCTTGCACCATTTGGTTTTCGTTAATGGGAGCTAGGGTTTTGTCACCACGCTCTGATACTGCATTGAAAAGAAGAAGACGTTATATTCGCGGAAAAACCCTAGTATAGGCAGAAAAATCACGATAGAAGCAGCTCTTATTATTTTCTAATAATCAAAAGAGTACGAGAGGGGAGAATATATATAGACTATAATAAGTTCTAACAAAAAAGGAAATATAACTAGTCCCTAATTACACAACTACTCTTAGGGTTATAAACACTCCACTAGTCCCTAATTTCCAACATTAGTGTACTCTGTAATTTTGAGGACGTGTCCGTTTTATTGTTCGAAGGAATATGTAGCAATCATCATTTGCTGTTTTGAATAGATGCCTCCCAAATCATAGTGAGATTTGGGGGGAGAGGAACGAATAGGTGTTTCGTGGTAGGGAATAGGATCGTAATAAGGTTTGGTTTTTCATTAGATCTGATGTTTCTCTTTGGGATTTGATTTCGAACTTTTGTAATTATTCCATCGGTGGCATACTCAATTTGCCCCTCCTTTTAGTTGGGGTGTTTTTGTGGGCCGTTTTTTTGGTATGCGCTTGTATTCTTTTATTTTTATTCTCAATGAAAGTTTGTTTTTATAAAAAAGAAAAAAAAGAAAAAATAAATAAATTAGATGCCTCCCAAATCTTTGAGATTCTTCTTATGAAATTGGTTCTTCCTTCATTTGAAGCTTGCCCAAAATTTCAGTGAACAAAAGCAAATATTTTTAATGCCACAGGAAGGATCAAACTACATTACAAACAATAATACCCCCTAAAGAACTACAAGAATCAATGTAGCTCAACCAAAATTTTCCTATTTGAAAGATTTTGTTTCCTGCGGAGGATGATAAAATTTGGGCTGGGCTGAGACGTATAACTTGTCGGTGAACTATTAGGAAACCTTTTCGTAAGATGTTAATTATTTATAACCGTACACAATGATTGAAATGTTTGTTGATATTTTGATATTTTCGTTAATTGAAGGGTTGGGCATCGAGTTAATGGTTAATTGATCTCTCCAATATCTTCCCATAAGTACAGATAAAAATGTCAAATTAGTTTGGGGGTAAAAAAAACTATTATTTATTTATAAATTTTTTTGTTTATTGAAATACTTGTCAACATCAAATATCTTATTGAAATATCCATAAAATTAATTCTTAATTTTGTTATCGACATCAATACTTTTAATCATGGATTGTACCCTCTGAGGACTGTAGTTCTTAAGAATCTCTTGTTCAATTGATTCGTCTGTCAATCACTTGTTGTGATGCTTGCTTTTTTCATTCTCTCATCTTCTAATTGTTGCAGAAGAGCGGAGCAGGGTGTCAAATAATAACCGGAGCAAGCGTAGGAGAGATGTGTCTAACAGACCGTCTGTAAATTCAGATTTATTAATCAATTTGGAAGCGAGCAACAGTTCTATGGTACTGGGACTACTTATATCTTTGTTACTCTTCTTCTTTTGCAAGATTTTTCCTGTGTCGTTAGGTGGATCATATATGTCTTTTCTTGAGGTTGTAGCTTTTAGCACAAAAACCAATTTTAGCATGTTCTCCTTTATCCTGCGGGCTATGTCTGTTATCTTTCTCCTGGACTAGTTAGTTCTCATGGCTTGTTCTTGCATATACAATACATCATTATTTATATTATGATCAAACATTCAAGAAAAAGTCGAGAAAAAATGGATAGGGTGAGCTTAATTTTGGAGTTGTTATGTTTGTGAGAAATGTCATCACCCTAGAAGCATGGAGGTGGAAATGGGGAATATCCATGACACCACTAGGGCATGTGACAAGGACTCCACAAGACATAAAATGGTGCATGCCATATCAGAAATATTTTTCTTCAAATACTTCCGCAAGTTCCCAATGCTTCAAACAAGTTGGATTATAAATAGTTTAAAAATTTTATGGTATTGGTATGTAGGTTTAGAAATATTGAGACGACATATTTGGTCTGATACAATACTCAATAATGTGAGCTCTTGAAAATTGAATAACAAAATATGTCTATCTTTTGAAGACAGACCAAGTTTTGTGTGCCACCACTGGAGTGGAAATTCCCCCAATGAGTTGCTGCTGAGCTCTTTCTCTCCTGGACCTTGGTTTATCAGCTGATTGGGTTCGGTAGCTTTTGTTTCTCCCCTTTGGAGAAGTTAAGTTAGTTTGTTTTAACAATAATTTATTACCTCTTTCTCTCTCTCCTTCTATGTGTGAGTGCTGCTGTTCTTTTGGTTGGTTTATGTTCAAAGTTAGGGTTGTTCACAGGTAACAGACAAATGAGAGAGGAAGAATAGAAATAATTAAAAAATGTAAGGTTGGGTTGGGCAGCCGTTTTCTCTGTAGGAAAAATAGACTATGATCACTGTATCCATAAAACCAATCGTTTGATGTTGGTTTCAGTTGGTCATCGCAGTTTTCGGTCCAACTTTGTTCTGTTGGTTAATTCTTCAATTTCTGGAACCATCATGGATTGATCTTTATTTTCAGTGGTAGCATCTTATTAGCTGTTATTGTTGAAAATGTCATTTTGTAAGGATAAATAAAGTATATGCTGAAAATGGAATTATGTCTCTACTGCTTAATATTGAGCCAACATGTGATTTCTGTGCTATTGGCAGAAAGTGAAGCCTGCTCCACCGAAAGAGCCCAAATTCAGTTGTCCAATATGCATGGGTCCGTTAGTAGAAGAAACATCAACAAAGTGTGGTCATATTTTCTGTAAGGCATGCATCAGGGCTGCAATAGGCGTCCAGAGTAAATGCCCAACATGTAGGAAGAGAGTAACTGCCAAAGAACTGATTAGAGTATTCCTTCCTGGGACAAGCTTGGAGTGAGGCTTACGTGTAAGTTGCTTAATTGCTTGGTCATTCTCTTGTTCTCATGGTACAAAAAAAATTGCATATGCCCCATTTTTAATATGGGTCTGAAATTTCTTTCATGAATAACCTTGTCCCAATGGTCATACTTATGGGTGAGATCTTTTTTTGTATTTCCTTTTTAGGGTTTAGGATGGTTATTCAATTGTAATTTGTGGCGGCTGGAGCAGTTATGATTGTCGTAAGGGTACCAGTGTAATTGCCTTGTCTGCTTGAAAGGGCATTTAATTTGTTGTATTTATGAAAAGTTCTATTACTGGGACTGATTCAGAATTTTTTTTTTGGGGGGGGGGGGGGGTATATATATGTGAAATAAATCCTTTGTAGCTCAGTTTTCCTATACCACTCTCGTATTTCAAGGCTGTAAAATACTCCTGAGCTGTTTGAGCTTTACCCTCGGTTTCAAAATAAATTTTGTTAATGTTTCAAAACTATCATTGGAGGAGAAATCCTGTAAAATGTTGGACCAAAATCAAGACTCGAAAGGTGTATCAGCCACCCAAATGTTGTGGTGATTCAAACTTTGTTCTAAATCACTGCCAAAACGTTTCAGCTCCCAATTTATATCCGAAATTCTAAAAATTTTCTGTTCTAATGATAGAGTTGTAGCATTTACGAAATTTCAAGTTTAATATTGTGACTTTGGGAAGTATAGTGGTACTTTTAAAACGGAGTTAGAACTCAAAGACACATGTGTACAACCTATAGAACAGATCCTGTTCAAATAAGGTCATAACAGAGGGTAAAATTCAAGGGAATTTTTTATAACCTTTCATTCATCTTCATTGCTAGTTTAAATCACGAACCAGTCACGTATTGACAGAGAATTCATGGATTCTGTAATCTACCGCATTCTATTTATTTAATGCACTGTTAGAATGGTGGGAATATGAATGCACCACATATGATGTATGGAAATTTTAGATTTTGATTGATTTAAATGTGTGGTAAATTAGAAAAGTAGGTCGCATATCTATATTTAAACACATTGATCCTTCTCTATCATTCTGTGGCAAGTGCAATTATCTGAACTTTTATTTTCTAATATTTGTCTTTTAATATGATTACAGCTCACACCGGATTTTTTTAAGACTTCGAAAGGAAACGGCAGAAGTTCTTTTGTAAGTAAGAAAAAAGCTAATTTTTAGATGGAAATTTCCAGTGTATTCTGCTGATTGCCTGCATTTTGATGATCTCAGAGTTGCATTAGGAGGAAATGCAGGAAATTCTAATTTCCTTAATTGTTTTTTGTTGTCAACTTTGATGATTTTATGAAGTTGTAAACAAACTGACAACGAAATCCGGCAGTAATGCAATGAGTTTACATAATTATTAAATTAGAAAGTTGCTTTTGTTGGTAGACTTCTGGTTGTCTCTCATCTATGTTATTTATATATCTGATTTTGATTTGATGATCATAGTATATATTTGTTTGAATCTTTTTAGAGCCTAGTGCTCATATCTTGAAAGACAATATACTATCTCTTGCTAATTAGTTTCTGGGATCATGTTGGAGAAAGTTCTAACTAAATGACTGGAAATATGAAGAGAGGCCAAATAGTAGACCTTTAAGAAAGATTTTTGATTCATTACCTTGGCCATGCTTACATATCTATTAAAGCACCAATCCCATTAAGCAAGACTTAATTATATTTCATACATTTTATTCATAGAGCCCATAAGCAATTCTATGCTTGTAGAGGTTTCTTTAGCACTGCTTTTCAGGGGTAGCTCTGGTGAACTCCATACTTTTCACCCATCTCTTTCAGCTTTGTTATCGGTTTCTTATACGGACCCCAGTTGTATTGATGGTCAACATCCTCGTTGTAGGGAGATTTGTCACAGTTGCCATATTCATAGCAATCTTTGTCTTTGTATTTGTATCCATCACATTCATAATCCTCCTTGGGTTTGTATCCCTCGTAATCCTCCTTGGGTTTATATCCCTCGTAATTATCATCTAATTCTTGGGGATAAGTTTTTGCAGTTGGTTTCTTCAGAGCCATTTCTCTTCCTCCTTCAACATTTTCCAGAAGTGTCATTGCCACTGCAGAGACCACGAGGATCGCAATGAGAACCTTACTGATCGTCATTTTTCTAACTTTGGTTTCTCTTTTTGTAGTGAAAATTGTTGAGGCCTCCAAATTTATATAGCTAACCAGGGAGTTTAGGTAGCCTTTTTGGATTAAATAATTTATGAGTTTCTGCAGGGGAATCTTTGTTCTAATGGAAACAAGTAGTTGAGTGGCCTCGTTGCAATTCATTGCCTCTAAATTTG

mRNA sequence

GTAGGCACGTGCGATGGAAAGAGAGGGAAGAAAGCGAGCAAACACGTGTCACACAATTATTGGACGTGAGTAAAAGACGTGGCGCCTTTCAGGCTCGTCTCCTCTTTCACTCTCCCCGCAAGAACCCTGGAACTTCCCTGTGCCGTGTCTCCATTCTCGTCCTCAATCTCAATCTTTTTCTTATTTTCTCCCTTTATAATGCCGACTTTTCCTTCTCTTTCCCTTCCATTTCTCAACCCTTAGAATCCTGACTACAAATATCACAAACCCTAGAAGAACTAATCATATAATCAAATCTAATCTATCTAACCCCTCAAATTTGGTAGATATTTTTTCAACCGCTTATTTCAGGTTGCTGAGGAGCTTGAAGATATAGATGAGTACTCAGGCTATGAGGGGACATAACACAAGAGGTTATCATCGTAGGAAATCATTGGACTTGGACCTGAACAGCATGCCACCAACTGAGAACCGAGATCAAGGAGAAACATCTCAACTGCGGCTTCAGGATGCACAGGTTAATCAACAACAGCCTGTACAGCCTGCAATGATCGACATTGAGGCCATTGATGACGATGTCATTGAATCATCCGCCAGAGCTTTTGCTGAAGCTAAAAATAAATCCAGACGAAATGCTAGGAAGAATGTAGTTGACGTGGATGCAGAAGAGCGGAGCAGGGTGTCAAATAATAACCGGAGCAAGCGTAGGAGAGATGTGTCTAACAGACCGTCTGTAAATTCAGATTTATTAATCAATTTGGAAGCGAGCAACAGTTCTATGACAGACCAAGTTTTGTGTGCCACCACTGGAGTGGAAATTCCCCCAATGAGTTGCTGCTGAGCTCTTTCTCTCCTGGACCTTGGTTTATCAGCTGATTGGGTTCGGTAGCTTTTGTTTCTCCCCTTTGGAGAAGTTAAGTTAGTTTGTTTTAACAATAATTTATTACCTCTTTCTCTCTCTCCTTCTATGTGTGAGTGCTGCTGTTCTTTTGGTTGGTTTATGTTCAAAGTTAGGGTTGTTCACAGGTAACAGACAAATGAGAGAGGAAGAATAGAAATAATTAAAAAATGTAAGGTTGGGTTGGGCAGCCGTTTTCTCTGTAGGAAAAATAGACTATGATCACTGTATCCATAAAACCAATCGTTTGATGTTGGTTTCAGTTGGTCATCGCAGTTTTCGGTCCAACTTTGTTCTGTTGGTTAATTCTTCAATTTCTGGAACCATCATGGATTGATCTTTATTTTCAGTGGTAGCATCTTATTAGCTGTTATTGTTGAAAATGTCATTTTGTAAGGATAAATAAAGTATATGCTGAAAATGGAATTATGTCTCTACTGCTTAATATTGAGCCAACATGTGATTTCTGTGCTATTGGCAGAAAGTGAAGCCTGCTCCACCGAAAGAGCCCAAATTCAGTTGTCCAATATGCATGGGTCCGTTAGTAGAAGAAACATCAACAAAGTGTGGTCATATTTTCTGTAAGGCATGCATCAGGGCTGCAATAGGCGTCCAGAGTAAATGCCCAACATGTAGGAAGAGAGTAACTGCCAAAGAACTGATTAGAGTATTCCTTCCTGGGACAAGCTTGGAGTGAGGCTTACGTCTCACACCGGATTTTTTTAAGACTTCGAAAGGAAACGGCAGAAGTTCTTTTGTAAGTAAGAAAAAAGCTAATTTTTAGATGGAAATTTCCAGTGTATTCTGCTGATTGCCTGCATTTTGATGATCTCAGAGTTGCATTAGGAGGAAATGCAGGAAATTCTAATTTCCTTAATTGTTTTTTGTTGTCAACTTTGATGATTTTATGAAGTTGTAAACAAACTGACAACGAAATCCGGCAGTAATGCAATGAGTTTACATAATTATTAAATTAGAAAGTTGCTTTTGTTGGTAGACTTCTGGTTGTCTCTCATCTATGTTATTTATATATCTGATTTTGATTTGATGATCATAGTATATATTTGTTTGAATCTTTTTAGAGCCTAGTGCTCATATCTTGAAAGACAATATACTATCTCTTGCTAATTAGTTTCTGGGATCATGTTGGAGAAAGTTCTAACTAAATGACTGGAAATATGAAGAGAGGCCAAATAGTAGACCTTTAAGAAAGATTTTTGATTCATTACCTTGGCCATGCTTACATATCTATTAAAGCACCAATCCCATTAAGCAAGACTTAATTATATTTCATACATTTTATTCATAGAGCCCATAAGCAATTCTATGCTTGTAGAGGTTTCTTTAGCACTGCTTTTCAGGGGTAGCTCTGGTGAACTCCATACTTTTCACCCATCTCTTTCAGCTTTGTTATCGGTTTCTTATACGGACCCCAGTTGTATTGATGGTCAACATCCTCGTTGTAGGGAGATTTGTCACAGTTGCCATATTCATAGCAATCTTTGTCTTTGTATTTGTATCCATCACATTCATAATCCTCCTTGGGTTTGTATCCCTCGTAATCCTCCTTGGGTTTATATCCCTCGTAATTATCATCTAATTCTTGGGGATAAGTTTTTGCAGTTGGTTTCTTCAGAGCCATTTCTCTTCCTCCTTCAACATTTTCCAGAAGTGTCATTGCCACTGCAGAGACCACGAGGATCGCAATGAGAACCTTACTGATCGTCATTTTTCTAACTTTGGTTTCTCTTTTTGTAGTGAAAATTGTTGAGGCCTCCAAATTTATATAGCTAACCAGGGAGTTTAGGTAGCCTTTTTGGATTAAATAATTTATGAGTTTCTGCAGGGGAATCTTTGTTCTAATGGAAACAAGTAGTTGAGTGGCCTCGTTGCAATTCATTGCCTCTAAATTTG

Coding sequence (CDS)

ATGAGTACTCAGGCTATGAGGGGACATAACACAAGAGGTTATCATCGTAGGAAATCATTGGACTTGGACCTGAACAGCATGCCACCAACTGAGAACCGAGATCAAGGAGAAACATCTCAACTGCGGCTTCAGGATGCACAGGTTAATCAACAACAGCCTGTACAGCCTGCAATGATCGACATTGAGGCCATTGATGACGATGTCATTGAATCATCCGCCAGAGCTTTTGCTGAAGCTAAAAATAAATCCAGACGAAATGCTAGGAAGAATGTAGTTGACGTGGATGCAGAAGAGCGGAGCAGGGTGTCAAATAATAACCGGAGCAAGCGTAGGAGAGATGTGTCTAACAGACCGTCTGTAAATTCAGATTTATTAATCAATTTGGAAGCGAGCAACAGTTCTATGACAGACCAAGTTTTGTGTGCCACCACTGGAGTGGAAATTCCCCCAATGAGTTGCTGCTGA

Protein sequence

MSTQAMRGHNTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDAEERSRVSNNNRSKRRRDVSNRPSVNSDLLINLEASNSSMTDQVLCATTGVEIPPMSCC

Homology

[Close]

BLAST of Cmc04g0103171 vs. NCBI nr
Match: XP_008460369.1 (PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X1 [Cucumis melo] >XP_008460370.1 PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X1 [Cucumis melo] >XP_008460371.1 PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X1 [Cucumis melo] >XP_008460372.1 PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X1 [Cucumis melo] >XP_016902544.1 PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X1 [Cucumis melo])

HSP 1 Score: 248.8 bits (634), Expect = 3.0e-62
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MSTQAMRGHNTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMID 60
           MSTQAMRGHNTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMID
Sbjct: 1   MSTQAMRGHNTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMID 60

Query: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDAEERSRVSNNNRSKRRRDVSNRPSV 120
           IEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDAEERSRVSNNNRSKRRRDVSNRPSV
Sbjct: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDAEERSRVSNNNRSKRRRDVSNRPSV 120

Query: 121 NSDLLINLEASNSSM 136
           NSDLLINLEASNSSM
Sbjct: 121 NSDLLINLEASNSSM 135

[Close]

BLAST of Cmc04g0103171 vs. NCBI nr
Match: XP_004144388.1 (E3 ubiquitin-protein ligase RNF4 [Cucumis sativus] >XP_031738436.1 E3 ubiquitin-protein ligase RNF4 [Cucumis sativus] >KAE8650852.1 hypothetical protein Csa_000772 [Cucumis sativus])

HSP 1 Score: 246.5 bits (628), Expect = 1.5e-61
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MSTQAMRGHNTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMID 60
           MSTQAMRGH TRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMID
Sbjct: 1   MSTQAMRGHTTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMID 60

Query: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDAEERSRVSNNNRSKRRRDVSNRPSV 120
           IEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDAEERSRVSNNNRSKRRRDVSNRPSV
Sbjct: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDAEERSRVSNNNRSKRRRDVSNRPSV 120

Query: 121 NSDLLINLEASNSSM 136
           NSDLLINLEASNSSM
Sbjct: 121 NSDLLINLEASNSSM 135

[Close]

BLAST of Cmc04g0103171 vs. NCBI nr
Match: XP_008460373.1 (PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X2 [Cucumis melo])

HSP 1 Score: 242.7 bits (618), Expect = 2.1e-60
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MSTQAMRGHNTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMID 60
           MSTQAMRGHNTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMID
Sbjct: 1   MSTQAMRGHNTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMID 60

Query: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDAEERSRVSNNNRSKRRRDVSNRPSV 120
           IEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDA ERSRVSNNNRSKRRRDVSNRPSV
Sbjct: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDA-ERSRVSNNNRSKRRRDVSNRPSV 120

Query: 121 NSDLLINLEASNSSM 136
           NSDLLINLEASNSSM
Sbjct: 121 NSDLLINLEASNSSM 134

[Close]

BLAST of Cmc04g0103171 vs. NCBI nr
Match: XP_038888129.1 (E3 ubiquitin-protein ligase RNF4-like [Benincasa hispida] >XP_038888130.1 E3 ubiquitin-protein ligase RNF4-like [Benincasa hispida] >XP_038888131.1 E3 ubiquitin-protein ligase RNF4-like [Benincasa hispida] >XP_038888132.1 E3 ubiquitin-protein ligase RNF4-like [Benincasa hispida] >XP_038888133.1 E3 ubiquitin-protein ligase RNF4-like [Benincasa hispida] >XP_038888134.1 E3 ubiquitin-protein ligase RNF4-like [Benincasa hispida] >XP_038888135.1 E3 ubiquitin-protein ligase RNF4-like [Benincasa hispida])

HSP 1 Score: 225.7 bits (574), Expect = 2.7e-55
Identity = 123/135 (91.11%), Postives = 128/135 (94.81%), Query Frame = 0


Query: 1   MSTQAMRGHNTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMID 60
           MSTQAMRGH  RGYHRRKSLDLDLNSMPPTENRDQGETSQLR Q+AQVNQQQ VQPAMID
Sbjct: 1   MSTQAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQLRFQEAQVNQQQHVQPAMID 60

Query: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDAEERSRVSNNNRSKRRRDVSNRPSV 120
           IEAIDDDVIESSARAFAEAKNKSRRNARKN+VDVDAEE ++VSNNNRSKRRRDVSN+  V
Sbjct: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEEWTKVSNNNRSKRRRDVSNQQPV 120

Query: 121 NSDLLINLEASNSSM 136
           NSDLLINLEASNSSM
Sbjct: 121 NSDLLINLEASNSSM 135

[Close]

BLAST of Cmc04g0103171 vs. NCBI nr
Match: XP_022967334.1 (E3 ubiquitin-protein ligase RNF4-like [Cucurbita maxima] >XP_022967335.1 E3 ubiquitin-protein ligase RNF4-like [Cucurbita maxima] >XP_022967336.1 E3 ubiquitin-protein ligase RNF4-like [Cucurbita maxima] >XP_022967337.1 E3 ubiquitin-protein ligase RNF4-like [Cucurbita maxima] >XP_022967338.1 E3 ubiquitin-protein ligase RNF4-like [Cucurbita maxima] >XP_022967339.1 E3 ubiquitin-protein ligase RNF4-like [Cucurbita maxima])

HSP 1 Score: 224.2 bits (570), Expect = 7.9e-55
Identity = 121/138 (87.68%), Postives = 128/138 (92.75%), Query Frame = 0


Query: 1   MSTQAMRGHNTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMID 60
           MST+AMRGH  RGYHRRKSLDLDLNSMPPTENRDQGETSQ   Q+AQVNQQQ VQPAMID
Sbjct: 1   MSTRAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGFQEAQVNQQQSVQPAMID 60

Query: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDAEERSRVSNNNRSKRRRDVSNRPSV 120
           IEAIDDDVIESSARAFAEAKNKSRRNARKN+VDVDAEERSR SNNNRSKRRRDV N+ +V
Sbjct: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERSRASNNNRSKRRRDVPNQQTV 120

Query: 121 NSDLLINLEASNSSMTDQ 139
           NSDLLINLEASNSSM ++
Sbjct: 121 NSDLLINLEASNSSMKEK 138

[Close]

BLAST of Cmc04g0103171 vs. ExPASy TrEMBL
Match: A0A1S3CCB4 (E3 ubiquitin-protein ligase RNF4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499213 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.4e-62
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MSTQAMRGHNTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMID 60
           MSTQAMRGHNTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMID
Sbjct: 1   MSTQAMRGHNTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMID 60

Query: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDAEERSRVSNNNRSKRRRDVSNRPSV 120
           IEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDAEERSRVSNNNRSKRRRDVSNRPSV
Sbjct: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDAEERSRVSNNNRSKRRRDVSNRPSV 120

Query: 121 NSDLLINLEASNSSM 136
           NSDLLINLEASNSSM
Sbjct: 121 NSDLLINLEASNSSM 135

[Close]

BLAST of Cmc04g0103171 vs. ExPASy TrEMBL
Match: A0A1S3CBW2 (E3 ubiquitin-protein ligase RNF4-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499213 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 1.0e-60
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MSTQAMRGHNTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMID 60
           MSTQAMRGHNTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMID
Sbjct: 1   MSTQAMRGHNTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMID 60

Query: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDAEERSRVSNNNRSKRRRDVSNRPSV 120
           IEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDA ERSRVSNNNRSKRRRDVSNRPSV
Sbjct: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDA-ERSRVSNNNRSKRRRDVSNRPSV 120

Query: 121 NSDLLINLEASNSSM 136
           NSDLLINLEASNSSM
Sbjct: 121 NSDLLINLEASNSSM 134

[Close]

BLAST of Cmc04g0103171 vs. ExPASy TrEMBL
Match: A0A6J1HQI7 (E3 ubiquitin-protein ligase RNF4-like OS=Cucurbita maxima OX=3661 GN=LOC111466888 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.8e-55
Identity = 121/138 (87.68%), Postives = 128/138 (92.75%), Query Frame = 0


Query: 1   MSTQAMRGHNTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMID 60
           MST+AMRGH  RGYHRRKSLDLDLNSMPPTENRDQGETSQ   Q+AQVNQQQ VQPAMID
Sbjct: 1   MSTRAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGFQEAQVNQQQSVQPAMID 60

Query: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDAEERSRVSNNNRSKRRRDVSNRPSV 120
           IEAIDDDVIESSARAFAEAKNKSRRNARKN+VDVDAEERSR SNNNRSKRRRDV N+ +V
Sbjct: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERSRASNNNRSKRRRDVPNQQTV 120

Query: 121 NSDLLINLEASNSSMTDQ 139
           NSDLLINLEASNSSM ++
Sbjct: 121 NSDLLINLEASNSSMKEK 138

[Close]

BLAST of Cmc04g0103171 vs. ExPASy TrEMBL
Match: A0A6J1HFU4 (E3 ubiquitin-protein ligase RNF4-like OS=Cucurbita moschata OX=3662 GN=LOC111463920 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.9e-54
Identity = 120/138 (86.96%), Postives = 126/138 (91.30%), Query Frame = 0


Query: 1   MSTQAMRGHNTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMID 60
           MSTQAMRGH  RGYHRRKSLDLDLNSMPPTENRDQGETSQ    +AQVNQQQ VQPAMID
Sbjct: 1   MSTQAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGFPEAQVNQQQSVQPAMID 60

Query: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDAEERSRVSNNNRSKRRRDVSNRPSV 120
           IEAIDDDVIESSARAFAEAKNKSRRNARKN+VDVDAEERSR SNNNRSKRRRDV N+ +V
Sbjct: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERSRASNNNRSKRRRDVPNQQTV 120

Query: 121 NSDLLINLEASNSSMTDQ 139
           NSDLLINLE SNSSM ++
Sbjct: 121 NSDLLINLEGSNSSMKEK 138

[Close]

BLAST of Cmc04g0103171 vs. ExPASy TrEMBL
Match: A0A6J1E010 (E3 ubiquitin-protein ligase RNF4 isoform X2 OS=Momordica charantia OX=3673 GN=LOC111024653 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.5e-51
Identity = 116/138 (84.06%), Postives = 127/138 (92.03%), Query Frame = 0


Query: 1   MSTQAMRGHNTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMID 60
           MSTQAMRG   RGYHRRKSLDLDLNSMPP+ENRDQGE SQL LQ+A  NQQQP+QP MID
Sbjct: 1   MSTQAMRGTTARGYHRRKSLDLDLNSMPPSENRDQGEPSQLGLQEAHSNQQQPLQPTMID 60

Query: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDAEERSRVSNNNRSKRRRDVSNRPSV 120
           IEAIDDDVIESSARAFAEAKNKSRRNARKN+VDVDAEERSRVSNN RSKRRR+VSN+ +V
Sbjct: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERSRVSNNIRSKRRREVSNQRTV 120

Query: 121 NSDLLINLEASNSSMTDQ 139
           NS+LLINLEASNSS+ ++
Sbjct: 121 NSNLLINLEASNSSLKEK 138

[Close]

BLAST of Cmc04g0103171 vs. TAIR 10
Match: AT5G48655.2 (RING/U-box superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 4.4e-11
Identity = 56/145 (38.62%), Postives = 85/145 (58.62%), Query Frame = 0


Query: 12  RGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIES 71
           RG  RRK++ +DLN++P  +   +G ++ +R     +   QP  P MID++AI+DDVIES
Sbjct: 10  RGNRRRKAV-IDLNAVPVDQ---EGTSASVRTLTVPITPSQPA-PTMIDVDAIEDDVIES 69

Query: 72  SARAFAEAKNKSRRNARKN--VVDVDAEERSRVSNNNRSKRRRDVSNRPSVNSD-LLINL 131
           SA AFAEAK+KS RNAR+   +VDV++   +R   N  +KRRR  S+   ++ +   +N 
Sbjct: 70  SASAFAEAKSKS-RNARRRPLMVDVESGGTTRFPANISNKRRRIPSSESVIDCEHASVND 129

Query: 132 EASNSSMTDQVLCATTGVEIPPMSC 154
           E + SS   +        E P  +C
Sbjct: 130 EVNMSSRVSRSKAPAPPPEEPKFTC 148

[Close]

BLAST of Cmc04g0103171 vs. TAIR 10
Match: AT5G48655.1 (RING/U-box superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 4.4e-11
Identity = 56/145 (38.62%), Postives = 85/145 (58.62%), Query Frame = 0


Query: 12  RGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIES 71
           RG  RRK++ +DLN++P  +   +G ++ +R     +   QP  P MID++AI+DDVIES
Sbjct: 10  RGNRRRKAV-IDLNAVPVDQ---EGTSASVRTLTVPITPSQPA-PTMIDVDAIEDDVIES 69

Query: 72  SARAFAEAKNKSRRNARKN--VVDVDAEERSRVSNNNRSKRRRDVSNRPSVNSD-LLINL 131
           SA AFAEAK+KS RNAR+   +VDV++   +R   N  +KRRR  S+   ++ +   +N 
Sbjct: 70  SASAFAEAKSKS-RNARRRPLMVDVESGGTTRFPANISNKRRRIPSSESVIDCEHASVND 129

Query: 132 EASNSSMTDQVLCATTGVEIPPMSC 154
           E + SS   +        E P  +C
Sbjct: 130 EVNMSSRVSRSKAPAPPPEEPKFTC 148

[Close]

BLAST of Cmc04g0103171 vs. TAIR 10
Match: AT5G48655.3 (RING/U-box superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 4.4e-11
Identity = 56/145 (38.62%), Postives = 85/145 (58.62%), Query Frame = 0


Query: 12  RGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMIDIEAIDDDVIES 71
           RG  RRK++ +DLN++P  +   +G ++ +R     +   QP  P MID++AI+DDVIES
Sbjct: 10  RGNRRRKAV-IDLNAVPVDQ---EGTSASVRTLTVPITPSQPA-PTMIDVDAIEDDVIES 69

Query: 72  SARAFAEAKNKSRRNARKN--VVDVDAEERSRVSNNNRSKRRRDVSNRPSVNSD-LLINL 131
           SA AFAEAK+KS RNAR+   +VDV++   +R   N  +KRRR  S+   ++ +   +N 
Sbjct: 70  SASAFAEAKSKS-RNARRRPLMVDVESGGTTRFPANISNKRRRIPSSESVIDCEHASVND 129

Query: 132 EASNSSMTDQVLCATTGVEIPPMSC 154
           E + SS   +        E P  +C
Sbjct: 130 EVNMSSRVSRSKAPAPPPEEPKFTC 148

The following BLAST results are available for this feature:

BLAST of Cmc04g0103171 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008460369.1	3.0e-62	100.00	PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X1 [Cucumis melo] >XP_0...	[more]
XP_004144388.1	1.5e-61	99.26	E3 ubiquitin-protein ligase RNF4 [Cucumis sativus] >XP_031738436.1 E3 ubiquitin-...	[more]
XP_008460373.1	2.1e-60	99.26	PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X2 [Cucumis melo]	[more]
XP_038888129.1	2.7e-55	91.11	E3 ubiquitin-protein ligase RNF4-like [Benincasa hispida] >XP_038888130.1 E3 ubi...	[more]
XP_022967334.1	7.9e-55	87.68	E3 ubiquitin-protein ligase RNF4-like [Cucurbita maxima] >XP_022967335.1 E3 ubiq...	[more]

BLAST of Cmc04g0103171 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc04g0103171 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CCB4	1.4e-62	100.00	E3 ubiquitin-protein ligase RNF4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A1S3CBW2	1.0e-60	99.26	E3 ubiquitin-protein ligase RNF4-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A6J1HQI7	3.8e-55	87.68	E3 ubiquitin-protein ligase RNF4-like OS=Cucurbita maxima OX=3661 GN=LOC11146688...	[more]
A0A6J1HFU4	1.9e-54	86.96	E3 ubiquitin-protein ligase RNF4-like OS=Cucurbita moschata OX=3662 GN=LOC111463...	[more]
A0A6J1E010	1.5e-51	84.06	E3 ubiquitin-protein ligase RNF4 isoform X2 OS=Momordica charantia OX=3673 GN=LO...	[more]

BLAST of Cmc04g0103171 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48655.2	4.4e-11	38.62	RING/U-box superfamily protein	[more]
AT5G48655.1	4.4e-11	38.62	RING/U-box superfamily protein	[more]
AT5G48655.3	4.4e-11	38.62	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..118
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..117
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..56
None	No IPR available	PANTHER	PTHR47094:SF11	E3 UBIQUITIN-PROTEIN LIGASE RNF4-LIKE	coord: 1..139
None	No IPR available	PANTHER	PTHR47094	ELFLESS, ISOFORM B	coord: 1..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0103171.1	Cmc04g0103171.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046872	metal ion binding