Cmc04g0102571 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0102571
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr04: 19458458 .. 19459048 (-)
RNA-Seq Expression	Cmc04g0102571
Synteny	Cmc04g0102571

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATTCTAATTCTGTCTCGACTCTGGTAGATCAACCAAATTATGTAAGACCTATTGGTTGTAAATGGATCTACAAGAGAAAACGAGACCAAGCTGGTAAAGTACAGACTTCCAAAGCTCGACTTGTGGCAAAAGGTTATACACAAAAGGAGGGAATAGATTATGAAGAAACTTTCTCTTCTGTTGCCATGATAAAGTCGATACGAATGCTCTTGTCCTTCGCCACTTTTTATGATTATGAAATTTGGCAGATGGATGTCAAGACAATCTTTTTGAACGGTAATCTTGAAGAGAGTATTTATATGGTTCAACCAGAGAGGTTTATACCAAATGGTCAAGAACAAAAGGTTTGTAAGCTTCAAAAATCTATTTATGGATTAAAACAAGCTTCTAGATCCTGGAATATAATGTTTGATACTGCGATCAAATCTTATGGTTTTGAACAAAATGTTGATGAACCTTGTGTTTACAAAAGGATCATTAAAACTATTGTAGCATTCTTAGTTCTGTATGTAGATGACATTCTACTCATTGGGAATGATACAGGTCATCTAATTGATATTAAGGAATGGCTAGCTATGCAATTCTAA

mRNA sequence

ATGTATTCTAATTCTGTCTCGACTCTGGTAGATCAACCAAATTATGTAAGACCTATTGGTTGTAAATGGATCTACAAGAGAAAACGAGACCAAGCTGGTAAAGTACAGACTTCCAAAGCTCGACTTGTGGCAAAAGGTTATACACAAAAGGAGGGAATAGATTATGAAGAAACTTTCTCTTCTGTTGCCATGATAAAGTCGATACGAATGCTCTTGTCCTTCGCCACTTTTTATGATTATGAAATTTGGCAGATGGATGTCAAGACAATCTTTTTGAACGGTAATCTTGAAGAGAGTATTTATATGGTTCAACCAGAGAGGTTTATACCAAATGGTCAAGAACAAAAGGTTTGTAAGCTTCAAAAATCTATTTATGGATTAAAACAAGCTTCTAGATCCTGGAATATAATGTTTGATACTGCGATCAAATCTTATGGTTTTGAACAAAATGTTGATGAACCTTGTGTTTACAAAAGGATCATTAAAACTATTGTAGCATTCTTAGTTCTGTATGTAGATGACATTCTACTCATTGGGAATGATACAGGTCATCTAATTGATATTAAGGAATGGCTAGCTATGCAATTCTAA

Coding sequence (CDS)

ATGTATTCTAATTCTGTCTCGACTCTGGTAGATCAACCAAATTATGTAAGACCTATTGGTTGTAAATGGATCTACAAGAGAAAACGAGACCAAGCTGGTAAAGTACAGACTTCCAAAGCTCGACTTGTGGCAAAAGGTTATACACAAAAGGAGGGAATAGATTATGAAGAAACTTTCTCTTCTGTTGCCATGATAAAGTCGATACGAATGCTCTTGTCCTTCGCCACTTTTTATGATTATGAAATTTGGCAGATGGATGTCAAGACAATCTTTTTGAACGGTAATCTTGAAGAGAGTATTTATATGGTTCAACCAGAGAGGTTTATACCAAATGGTCAAGAACAAAAGGTTTGTAAGCTTCAAAAATCTATTTATGGATTAAAACAAGCTTCTAGATCCTGGAATATAATGTTTGATACTGCGATCAAATCTTATGGTTTTGAACAAAATGTTGATGAACCTTGTGTTTACAAAAGGATCATTAAAACTATTGTAGCATTCTTAGTTCTGTATGTAGATGACATTCTACTCATTGGGAATGATACAGGTCATCTAATTGATATTAAGGAATGGCTAGCTATGCAATTCTAA

Protein sequence

MYSNSVSTLVDQPNYVRPIGCKWIYKRKRDQAGKVQTSKARLVAKGYTQKEGIDYEETFSSVAMIKSIRMLLSFATFYDYEIWQMDVKTIFLNGNLEESIYMVQPERFIPNGQEQKVCKLQKSIYGLKQASRSWNIMFDTAIKSYGFEQNVDEPCVYKRIIKTIVAFLVLYVDDILLIGNDTGHLIDIKEWLAMQF

Homology

[Close]

BLAST of Cmc04g0102571 vs. NCBI nr
Match: KAA0045356.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 347.1 bits (889), Expect = 1.0e-91
Identity = 170/196 (86.73%), Postives = 176/196 (89.80%), Query Frame = 0


Query: 1   MYSNSVSTLVDQPNYVRPIGCKWIYKRKRDQAGKVQTSKARLVAKGYTQKEGIDYEETFS 60
           MYSNSV TLVDQPN +RPIGCKWIYKRKRDQ  KVQT +ARLVAKGYTQKEGIDYEETFS
Sbjct: 161 MYSNSVWTLVDQPNNIRPIGCKWIYKRKRDQTAKVQTFRARLVAKGYTQKEGIDYEETFS 220

Query: 61  SVAMIKSIRMLLSFATFYDYEIWQMDVKTIFLNGNLEESIYMVQPERFIPNGQEQKVCKL 120
            +AMIKSIR+LLS ATFYDYEIWQMDVKT FLNGNLEESIYMVQPE FI  GQEQKVCKL
Sbjct: 221 PIAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQPEGFIQKGQEQKVCKL 280

Query: 121 QKSIYGLKQASRSWNIMFDTAIKSYGFEQNVDEPCVYKRIIKTIVAFLVLYVDDILLIGN 180
           QKSIYGLKQASRSWNI FDT IKSYGFEQNVDEPCVYKRII + VAFLVLYVDDILLIGN
Sbjct: 281 QKSIYGLKQASRSWNIRFDTGIKSYGFEQNVDEPCVYKRIINSTVAFLVLYVDDILLIGN 340

Query: 181 DTGHLIDIKEWLAMQF 197
           +  HL DIKEWL  QF
Sbjct: 341 EVDHLTDIKEWLDTQF 356

[Close]

BLAST of Cmc04g0102571 vs. NCBI nr
Match: TYK03644.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 343.6 bits (880), Expect = 1.1e-90
Identity = 172/196 (87.76%), Postives = 178/196 (90.82%), Query Frame = 0


Query: 1   MYSNSVSTLVDQPNYVRPIGCKWIYKRKRDQAGKVQTSKARLVAKGYTQKEGIDYEETFS 60
           MYSNSV TLVDQPN V+PIGCKWIYKRKRDQAGKVQT KARLVAKGYTQKEGIDYEE F 
Sbjct: 256 MYSNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKARLVAKGYTQKEGIDYEEVF- 315

Query: 61  SVAMIKSIRMLLSFATFYDYEIWQMDVKTIFLNGNLEESIYMVQPERFIPNGQEQKVCKL 120
           S AMIKSIR+LLS ATFYDYEIWQMDVKT FLN NLEESIYMVQPERFI  GQEQK+CKL
Sbjct: 316 SFAMIKSIRILLSIATFYDYEIWQMDVKTTFLNANLEESIYMVQPERFIQKGQEQKICKL 375

Query: 121 QKSIYGLKQASRSWNIMFDTAIKSYGFEQNVDEPCVYKRIIKTIVAFLVLYVDDILLIGN 180
           QKSIYGLKQASRS NI FDTAIKSYG EQNVDEPCVYKRI+ + VAFLVLYVDDILLIGN
Sbjct: 376 QKSIYGLKQASRSCNIRFDTAIKSYGLEQNVDEPCVYKRIMNSTVAFLVLYVDDILLIGN 435

Query: 181 DTGHLIDIKEWLAMQF 197
           D GHL DIK+WLAMQF
Sbjct: 436 DVGHLADIKKWLAMQF 450

[Close]

BLAST of Cmc04g0102571 vs. NCBI nr
Match: ADJ18449.1 (gag/pol protein, partial [Bryonia dioica])

HSP 1 Score: 336.7 bits (862), Expect = 1.4e-88
Identity = 163/196 (83.16%), Postives = 177/196 (90.31%), Query Frame = 0


Query: 1    MYSNSVSTLVDQPNYVRPIGCKWIYKRKRDQAGKVQTSKARLVAKGYTQKEGIDYEETFS 60
            MY NSV TLVD P+ V+PIGCKWIYKRKRDQAGKVQT KARLVAKGYTQKEG+DYEETFS
Sbjct: 831  MYFNSVWTLVDLPSDVKPIGCKWIYKRKRDQAGKVQTFKARLVAKGYTQKEGVDYEETFS 890

Query: 61   SVAMIKSIRMLLSFATFYDYEIWQMDVKTIFLNGNLEESIYMVQPERFIPNGQEQKVCKL 120
             VAM+KSIR+LLS ATFY+YEIWQMDVKT FLNGNLEESIYMVQPE FI   QEQKVCKL
Sbjct: 891  PVAMLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIYMVQPEGFIAQDQEQKVCKL 950

Query: 121  QKSIYGLKQASRSWNIMFDTAIKSYGFEQNVDEPCVYKRIIKTIVAFLVLYVDDILLIGN 180
            QKSIYGLKQASRSWNI FDTAIKSYGFEQNVDEPCVYK+I+ ++VAFL+LYVDDILLIGN
Sbjct: 951  QKSIYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIVNSVVAFLILYVDDILLIGN 1010

Query: 181  DTGHLIDIKEWLAMQF 197
            D  +L D+K+WL  QF
Sbjct: 1011 DVEYLTDVKKWLNTQF 1026

[Close]

BLAST of Cmc04g0102571 vs. NCBI nr
Match: TYK15984.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 328.6 bits (841), Expect = 3.8e-86
Identity = 161/196 (82.14%), Postives = 172/196 (87.76%), Query Frame = 0


Query: 1   MYSNSVSTLVDQPNYVRPIGCKWIYKRKRDQAGKVQTSKARLVAKGYTQKEGIDYEETFS 60
           MY NSV  LVD P  V+PIGCKWIYKRKRD AGKVQT KARLVAKGYTQ+EG+DYEETFS
Sbjct: 349 MYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFS 408

Query: 61  SVAMIKSIRMLLSFATFYDYEIWQMDVKTIFLNGNLEESIYMVQPERFIPNGQEQKVCKL 120
            VAM+KSIR+LLS ATFYDYEIWQMDVKT FLNGNLEESI+M QPE FI  GQEQKVCKL
Sbjct: 409 PVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKL 468

Query: 121 QKSIYGLKQASRSWNIMFDTAIKSYGFEQNVDEPCVYKRIIKTIVAFLVLYVDDILLIGN 180
            +SIYGLKQASRSWNI FDTAIKSYGF+QNVDEPCVYK+I K  VAFLVLYVDDILLIGN
Sbjct: 469 NRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGN 528

Query: 181 DTGHLIDIKEWLAMQF 197
           D G+L D+K WLA QF
Sbjct: 529 DVGYLTDVKAWLAAQF 544

[Close]

BLAST of Cmc04g0102571 vs. NCBI nr
Match: KAA0025945.1 (gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0035786.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0040492.1 gag/pol protein [Cucumis melo var. makuwa] >KAA0041262.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 328.6 bits (841), Expect = 3.8e-86
Identity = 161/196 (82.14%), Postives = 172/196 (87.76%), Query Frame = 0


Query: 1   MYSNSVSTLVDQPNYVRPIGCKWIYKRKRDQAGKVQTSKARLVAKGYTQKEGIDYEETFS 60
           MY NSV  LVD P  V+PIGCKWIYKRKRD AGKVQT KARLVAKGYTQ+EG+DYEETFS
Sbjct: 739 MYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFS 798

Query: 61  SVAMIKSIRMLLSFATFYDYEIWQMDVKTIFLNGNLEESIYMVQPERFIPNGQEQKVCKL 120
            VAM+KSIR+LLS ATFYDYEIWQMDVKT FLNGNLEESI+M QPE FI  GQEQKVCKL
Sbjct: 799 PVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKL 858

Query: 121 QKSIYGLKQASRSWNIMFDTAIKSYGFEQNVDEPCVYKRIIKTIVAFLVLYVDDILLIGN 180
            +SIYGLKQASRSWNI FDTAIKSYGF+QNVDEPCVYK+I K  VAFLVLYVDDILLIGN
Sbjct: 859 NRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGN 918

Query: 181 DTGHLIDIKEWLAMQF 197
           D G+L D+K WLA QF
Sbjct: 919 DVGYLTDVKAWLAAQF 934

[Close]

BLAST of Cmc04g0102571 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 5.7e-45
Identity = 93/197 (47.21%), Postives = 127/197 (64.47%), Query Frame = 0


Query: 1    MYSNSVSTLVDQPNYVRPIGCKWIYKRKRDQAGKVQTSKARLVAKGYTQKEGIDYEETFS 60
            +  N    LV+ P   RP+ CKW++K K+D   K+   KARLV KG+ QK+GID++E FS
Sbjct: 837  LQKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFS 896

Query: 61   SVAMIKSIRMLLSFATFYDYEIWQMDVKTIFLNGNLEESIYMVQPERFIPNGQEQKVCKL 120
             V  + SIR +LS A   D E+ Q+DVKT FL+G+LEE IYM QPE F   G++  VCKL
Sbjct: 897  PVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKL 956

Query: 121  QKSIYGLKQASRSWNIMFDTAIKSYGFEQNVDEPCVY-KRIIKTIVAFLVLYVDDILLIG 180
             KS+YGLKQA R W + FD+ +KS  + +   +PCVY KR  +     L+LYVDD+L++G
Sbjct: 957  NKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVG 1016

Query: 181  NDTGHLIDIKEWLAMQF 197
             D G +  +K  L+  F
Sbjct: 1017 KDKGLIAKLKGDLSKSF 1033

[Close]

BLAST of Cmc04g0102571 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.6e-34
Identity = 73/184 (39.67%), Postives = 111/184 (60.33%), Query Frame = 0


Query: 13   PNYVRPIGCKWIYKRKRDQAGKVQTSKARLVAKGYTQKEGIDYEETFSSVAMIKSIRMLL 72
            P++V  +GC+WI+ +K +  G +   KARLVAKGY Q+ G+DY ETFS V    SIR++L
Sbjct: 992  PSHVTIVGCRWIFTKKYNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVL 1051

Query: 73   SFATFYDYEIWQMDVKTIFLNGNLEESIYMVQPERFIPNGQEQKVCKLQKSIYGLKQASR 132
              A    + I Q+DV   FL G L + +YM QP  FI   +   VCKL+K++YGLKQA R
Sbjct: 1052 GVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPR 1111

Query: 133  SWNIMFDTAIKSYGFEQNVDEPCVYKRIIKTIVAFLVLYVDDILLIGNDTGHLIDIKEWL 192
            +W +     + + GF  +V +  ++       + ++++YVDDIL+ GND   L +  + L
Sbjct: 1112 AWYVELRNYLLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNL 1171

Query: 193  AMQF 197
            + +F
Sbjct: 1172 SQRF 1175

[Close]

BLAST of Cmc04g0102571 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 1.0e-33
Identity = 73/184 (39.67%), Postives = 110/184 (59.78%), Query Frame = 0


Query: 13   PNYVRPIGCKWIYKRKRDQAGKVQTSKARLVAKGYTQKEGIDYEETFSSVAMIKSIRMLL 72
            P  V  +GC+WI+ +K +  G +   KARLVAKGY Q+ G+DY ETFS V    SIR++L
Sbjct: 975  PPSVTIVGCRWIFTKKFNSDGSLNRYKARLVAKGYNQRPGLDYAETFSPVIKSTSIRIVL 1034

Query: 73   SFATFYDYEIWQMDVKTIFLNGNLEESIYMVQPERFIPNGQEQKVCKLQKSIYGLKQASR 132
              A    + I Q+DV   FL G L + +YM QP  F+   +   VC+L+K+IYGLKQA R
Sbjct: 1035 GVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPR 1094

Query: 133  SWNIMFDTAIKSYGFEQNVDEPCVYKRIIKTIVAFLVLYVDDILLIGNDTGHLIDIKEWL 192
            +W +   T + + GF  ++ +  ++       + ++++YVDDIL+ GNDT  L    + L
Sbjct: 1095 AWYVELRTYLLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDAL 1154

Query: 193  AMQF 197
            + +F
Sbjct: 1155 SQRF 1158

[Close]

BLAST of Cmc04g0102571 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 142.1 bits (357), Expect = 6.6e-33
Identity = 79/196 (40.31%), Postives = 116/196 (59.18%), Query Frame = 0


Query: 4    NSVSTLVDQPNYVRPIGCKWIYKRKRDQAGKVQTSKARLVAKGYTQKEGIDYEETFSSVA 63
            N+  T+  +P     +  +W++  K ++ G     KARLVA+G+TQK  IDYEETF+ VA
Sbjct: 920  NNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAPVA 979

Query: 64   MIKSIRMLLSFATFYDYEIWQMDVKTIFLNGNLEESIYMVQPERFIPNGQEQKVCKLQKS 123
             I S R +LS    Y+ ++ QMDVKT FLNG L+E IYM  P+    N     VCKL K+
Sbjct: 980  RISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQGISCN--SDNVCKLNKA 1039

Query: 124  IYGLKQASRSWNIMFDTAIKSYGFEQNVDEPCVY---KRIIKTIVAFLVLYVDDILLIGN 183
            IYGLKQA+R W  +F+ A+K   F  +  + C+Y   K  I   + +++LYVDD+++   
Sbjct: 1040 IYGLKQAARCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENI-YVLLYVDDVVIATG 1099

Query: 184  DTGHLIDIKEWLAMQF 197
            D   + + K +L  +F
Sbjct: 1100 DMTRMNNFKRYLMEKF 1112

[Close]

BLAST of Cmc04g0102571 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 2.3e-09
Identity = 34/93 (36.56%), Postives = 50/93 (53.76%), Query Frame = 0


Query: 85  MDVKTIFLNGNLEESIYMVQPERFIPNGQEQKVCKLQKSIYGLKQASRSWNIMFDTAIKS 144
           MDV T FLN  ++E IY+ QP  F+       V +L   +YGLKQA   WN   +  +K 
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 145 YGFEQNVDEPCVYKRIIKTIVAFLVLYVDDILL 178
            GF ++  E  +Y R       ++ +YVDD+L+
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLV 93

[Close]

BLAST of Cmc04g0102571 vs. ExPASy TrEMBL
Match: A0A5A7TTA2 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G001350 PE=4 SV=1)

HSP 1 Score: 347.1 bits (889), Expect = 5.0e-92
Identity = 170/196 (86.73%), Postives = 176/196 (89.80%), Query Frame = 0


Query: 1   MYSNSVSTLVDQPNYVRPIGCKWIYKRKRDQAGKVQTSKARLVAKGYTQKEGIDYEETFS 60
           MYSNSV TLVDQPN +RPIGCKWIYKRKRDQ  KVQT +ARLVAKGYTQKEGIDYEETFS
Sbjct: 161 MYSNSVWTLVDQPNNIRPIGCKWIYKRKRDQTAKVQTFRARLVAKGYTQKEGIDYEETFS 220

Query: 61  SVAMIKSIRMLLSFATFYDYEIWQMDVKTIFLNGNLEESIYMVQPERFIPNGQEQKVCKL 120
            +AMIKSIR+LLS ATFYDYEIWQMDVKT FLNGNLEESIYMVQPE FI  GQEQKVCKL
Sbjct: 221 PIAMIKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIYMVQPEGFIQKGQEQKVCKL 280

Query: 121 QKSIYGLKQASRSWNIMFDTAIKSYGFEQNVDEPCVYKRIIKTIVAFLVLYVDDILLIGN 180
           QKSIYGLKQASRSWNI FDT IKSYGFEQNVDEPCVYKRII + VAFLVLYVDDILLIGN
Sbjct: 281 QKSIYGLKQASRSWNIRFDTGIKSYGFEQNVDEPCVYKRIINSTVAFLVLYVDDILLIGN 340

Query: 181 DTGHLIDIKEWLAMQF 197
           +  HL DIKEWL  QF
Sbjct: 341 EVDHLTDIKEWLDTQF 356

[Close]

BLAST of Cmc04g0102571 vs. ExPASy TrEMBL
Match: A0A5D3BX45 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G00740 PE=4 SV=1)

HSP 1 Score: 343.6 bits (880), Expect = 5.5e-91
Identity = 172/196 (87.76%), Postives = 178/196 (90.82%), Query Frame = 0


Query: 1   MYSNSVSTLVDQPNYVRPIGCKWIYKRKRDQAGKVQTSKARLVAKGYTQKEGIDYEETFS 60
           MYSNSV TLVDQPN V+PIGCKWIYKRKRDQAGKVQT KARLVAKGYTQKEGIDYEE F 
Sbjct: 256 MYSNSVWTLVDQPNDVKPIGCKWIYKRKRDQAGKVQTFKARLVAKGYTQKEGIDYEEVF- 315

Query: 61  SVAMIKSIRMLLSFATFYDYEIWQMDVKTIFLNGNLEESIYMVQPERFIPNGQEQKVCKL 120
           S AMIKSIR+LLS ATFYDYEIWQMDVKT FLN NLEESIYMVQPERFI  GQEQK+CKL
Sbjct: 316 SFAMIKSIRILLSIATFYDYEIWQMDVKTTFLNANLEESIYMVQPERFIQKGQEQKICKL 375

Query: 121 QKSIYGLKQASRSWNIMFDTAIKSYGFEQNVDEPCVYKRIIKTIVAFLVLYVDDILLIGN 180
           QKSIYGLKQASRS NI FDTAIKSYG EQNVDEPCVYKRI+ + VAFLVLYVDDILLIGN
Sbjct: 376 QKSIYGLKQASRSCNIRFDTAIKSYGLEQNVDEPCVYKRIMNSTVAFLVLYVDDILLIGN 435

Query: 181 DTGHLIDIKEWLAMQF 197
           D GHL DIK+WLAMQF
Sbjct: 436 DVGHLADIKKWLAMQF 450

[Close]

BLAST of Cmc04g0102571 vs. ExPASy TrEMBL
Match: E2GK51 (Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1)

HSP 1 Score: 336.7 bits (862), Expect = 6.7e-89
Identity = 163/196 (83.16%), Postives = 177/196 (90.31%), Query Frame = 0


Query: 1    MYSNSVSTLVDQPNYVRPIGCKWIYKRKRDQAGKVQTSKARLVAKGYTQKEGIDYEETFS 60
            MY NSV TLVD P+ V+PIGCKWIYKRKRDQAGKVQT KARLVAKGYTQKEG+DYEETFS
Sbjct: 831  MYFNSVWTLVDLPSDVKPIGCKWIYKRKRDQAGKVQTFKARLVAKGYTQKEGVDYEETFS 890

Query: 61   SVAMIKSIRMLLSFATFYDYEIWQMDVKTIFLNGNLEESIYMVQPERFIPNGQEQKVCKL 120
             VAM+KSIR+LLS ATFY+YEIWQMDVKT FLNGNLEESIYMVQPE FI   QEQKVCKL
Sbjct: 891  PVAMLKSIRILLSIATFYNYEIWQMDVKTAFLNGNLEESIYMVQPEGFIAQDQEQKVCKL 950

Query: 121  QKSIYGLKQASRSWNIMFDTAIKSYGFEQNVDEPCVYKRIIKTIVAFLVLYVDDILLIGN 180
            QKSIYGLKQASRSWNI FDTAIKSYGFEQNVDEPCVYK+I+ ++VAFL+LYVDDILLIGN
Sbjct: 951  QKSIYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIVNSVVAFLILYVDDILLIGN 1010

Query: 181  DTGHLIDIKEWLAMQF 197
            D  +L D+K+WL  QF
Sbjct: 1011 DVEYLTDVKKWLNTQF 1026

[Close]

BLAST of Cmc04g0102571 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 1.8e-86
Identity = 161/196 (82.14%), Postives = 172/196 (87.76%), Query Frame = 0


Query: 1   MYSNSVSTLVDQPNYVRPIGCKWIYKRKRDQAGKVQTSKARLVAKGYTQKEGIDYEETFS 60
           MY NSV  LVD P  V+PIGCKWIYKRKRD AGKVQT KARLVAKGYTQ+EG+DYEETFS
Sbjct: 739 MYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFS 798

Query: 61  SVAMIKSIRMLLSFATFYDYEIWQMDVKTIFLNGNLEESIYMVQPERFIPNGQEQKVCKL 120
            VAM+KSIR+LLS ATFYDYEIWQMDVKT FLNGNLEESI+M QPE FI  GQEQKVCKL
Sbjct: 799 PVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKL 858

Query: 121 QKSIYGLKQASRSWNIMFDTAIKSYGFEQNVDEPCVYKRIIKTIVAFLVLYVDDILLIGN 180
            +SIYGLKQASRSWNI FDTAIKSYGF+QNVDEPCVYK+I K  VAFLVLYVDDILLIGN
Sbjct: 859 NRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGN 918

Query: 181 DTGHLIDIKEWLAMQF 197
           D G+L D+K WLA QF
Sbjct: 919 DVGYLTDVKAWLAAQF 934

[Close]

BLAST of Cmc04g0102571 vs. ExPASy TrEMBL
Match: A0A5D3CYF4 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G001110 PE=4 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 1.8e-86
Identity = 161/196 (82.14%), Postives = 172/196 (87.76%), Query Frame = 0


Query: 1   MYSNSVSTLVDQPNYVRPIGCKWIYKRKRDQAGKVQTSKARLVAKGYTQKEGIDYEETFS 60
           MY NSV  LVD P  V+PIGCKWIYKRKRD AGKVQT KARLVAKGYTQ+EG+DYEETFS
Sbjct: 349 MYFNSVWELVDLPEGVKPIGCKWIYKRKRDSAGKVQTFKARLVAKGYTQREGVDYEETFS 408

Query: 61  SVAMIKSIRMLLSFATFYDYEIWQMDVKTIFLNGNLEESIYMVQPERFIPNGQEQKVCKL 120
            VAM+KSIR+LLS ATFYDYEIWQMDVKT FLNGNLEESI+M QPE FI  GQEQKVCKL
Sbjct: 409 PVAMLKSIRILLSIATFYDYEIWQMDVKTAFLNGNLEESIFMSQPEGFITQGQEQKVCKL 468

Query: 121 QKSIYGLKQASRSWNIMFDTAIKSYGFEQNVDEPCVYKRIIKTIVAFLVLYVDDILLIGN 180
            +SIYGLKQASRSWNI FDTAIKSYGF+QNVDEPCVYK+I K  VAFLVLYVDDILLIGN
Sbjct: 469 NRSIYGLKQASRSWNIRFDTAIKSYGFDQNVDEPCVYKKINKGKVAFLVLYVDDILLIGN 528

Query: 181 DTGHLIDIKEWLAMQF 197
           D G+L D+K WLA QF
Sbjct: 529 DVGYLTDVKAWLAAQF 544

[Close]

BLAST of Cmc04g0102571 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 156.4 bits (394), Expect = 2.4e-38
Identity = 76/188 (40.43%), Postives = 117/188 (62.23%), Query Frame = 0


Query: 13  PNYVRPIGCKWIYKRKRDQAGKVQTSKARLVAKGYTQKEGIDYEETFSSVAMIKSIRMLL 72
           P   +PIGCKW+YK K +  G ++  KARLVAKGYTQ+EGID+ ETFS V  + S++++L
Sbjct: 121 PPNKKPIGCKWVYKIKYNSDGTIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLIL 180

Query: 73  SFATFYDYEIWQMDVKTIFLNGNLEESIYMVQPERFIPNGQE----QKVCKLQKSIYGLK 132
           + +  Y++ + Q+D+   FLNG+L+E IYM  P  +     +      VC L+KSIYGLK
Sbjct: 181 AISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGLK 240

Query: 133 QASRSWNIMFDTAIKSYGFEQNVDEPCVYKRIIKTIVAFLVLYVDDILLIGNDTGHLIDI 192
           QASR W + F   +  +GF Q+  +   + +I  T+   +++YVDDI++  N+   + ++
Sbjct: 241 QASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDEL 300

Query: 193 KEWLAMQF 197
           K  L   F
Sbjct: 301 KSQLKSCF 308

[Close]

BLAST of Cmc04g0102571 vs. TAIR 10
Match: ATMG00820.1 (Reverse transcriptase (RNA-dependent DNA polymerase) )

HSP 1 Score: 60.1 bits (144), Expect = 2.3e-09
Identity = 31/72 (43.06%), Postives = 42/72 (58.33%), Query Frame = 0


Query: 4   NSVSTLVDQPNYVRPIGCKWIYKRKRDQAGKVQTSKARLVAKGYTQKEGIDYEETFSSVA 63
           N    LV  P     +GCKW++K K    G +   KARLVAKG+ Q+EGI + ET+S V 
Sbjct: 54  NKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVV 113

Query: 64  MIKSIRMLLSFA 76
              +IR +L+ A
Sbjct: 114 RTATIRTILNVA 125

The following BLAST results are available for this feature:

BLAST of Cmc04g0102571 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0045356.1	1.0e-91	86.73	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK03644.1	1.1e-90	87.76	gag/pol protein [Cucumis melo var. makuwa]	[more]
ADJ18449.1	1.4e-88	83.16	gag/pol protein, partial [Bryonia dioica]	[more]
TYK15984.1	3.8e-86	82.14	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0025945.1	3.8e-86	82.14	gag/pol protein [Cucumis melo var. makuwa] >KAA0026303.1 gag/pol protein [Cucumi...	[more]

BLAST of Cmc04g0102571 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	5.7e-45	47.21	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
Q94HW2	4.6e-34	39.67	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	1.0e-33	39.67	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P04146	6.6e-33	40.31	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P25600	2.3e-09	36.56	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc04g0102571 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TTA2	5.0e-92	86.73	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold316G0013...	[more]
A0A5D3BX45	5.5e-91	87.76	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1369G007...	[more]
E2GK51	6.7e-89	83.16	Gag/pol protein (Fragment) OS=Bryonia dioica OX=3652 PE=4 SV=1	[more]
A0A5A7TZD0	1.8e-86	82.14	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5D3CYF4	1.8e-86	82.14	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold94G00111...	[more]

BLAST of Cmc04g0102571 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	2.4e-38	40.43	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	2.3e-09	43.06	Reverse transcriptase (RNA-dependent DNA polymerase)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 4..196 e-value: 1.6E-57 score: 195.0
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 10..190
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 6..187

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0102571.1	Cmc04g0102571.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding