Cmc04g0102441 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0102441
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr04: 19231007 .. 19231897 (+)
RNA-Seq Expression	Cmc04g0102441
Synteny	Cmc04g0102441

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTCGCACCCAATTCTCTTGTCCCATCAAAACCCTTTGCACCAACAATGCCTTGGAGTATAAAGACTCCATTCTTCTATCTTTTCTCTCCCAACAGGGCAATCTTGTTCAGCGCTCCTGCCCCCACACTTCTCAACAAAATGGACGTGTTGAGCGCAAACATCGCCAAATTCTTGACTCAGTACGTGGCCTCCTTCTTTCTGCCTCATGCCCTGAGAAATTTTGGGGTGAAGCAGCTCTTACATCTGTCTATACTATCAATCGTCTTCCTTCCTCCGTTCTTCAGAATATCTCTCCATTCGAAAAACTATATGGTACTCCTCTCAACTATTCTAATCTTAAAACCTTCGGTTGTGCTTGCTTTGTTCTTCTGCATCCTCATGAACACACTAAACTTGAACCACGTGTCCACCTCTATTATTTTCTTGGCTATGGCACAGAACATAAAGGTTTTCATTGCTGGGATCCCCTTTCTAATAGACTTCGTATATCTCGTCATGTCACATTTTGGGAGCACACTATGTTCTCTCGTTTGTCCTCCTTCCACACCTCCTTCTCTAGTCCTCAACCTTTCTTCACTGACACATCTATTGACCTTTTTCTTCTCTCCGAGTCCCCTCTTGGTAATGAGCTTGCTCAATCTGCACCTACTTCGGCAACCTCGGACCAATCATCCATCTCTGATGGTAGTTCTGAACCTACTCCAGACACCCCTCCTTATCGTTCTACTCGGGTAAGGGAACCTCCTATTCATCTCCAAGATTATCACTGTTTTTCCACTATTGTTTCCCTTGTTGAACCTACCTCTTATCAAGAGGCTAGTACTAACCCTTTATGGCAGAAAGCGATGAATGATGAATTACAGGCTCTTGAAAAGACGCATACTTAA

mRNA sequence

ATGATTCGCACCCAATTCTCTTGTCCCATCAAAACCCTTTGCACCAACAATGCCTTGGAGTATAAAGACTCCATTCTTCTATCTTTTCTCTCCCAACAGGGCAATCTTGTTCAGCGCTCCTGCCCCCACACTTCTCAACAAAATGGACGTGTTGAGCGCAAACATCGCCAAATTCTTGACTCAGTACGTGGCCTCCTTCTTTCTGCCTCATGCCCTGAGAAATTTTGGGGTGAAGCAGCTCTTACATCTGTCTATACTATCAATCGTCTTCCTTCCTCCGTTCTTCAGAATATCTCTCCATTCGAAAAACTATATGGTACTCCTCTCAACTATTCTAATCTTAAAACCTTCGGTTGTGCTTGCTTTGTTCTTCTGCATCCTCATGAACACACTAAACTTGAACCACGTGTCCACCTCTATTATTTTCTTGGCTATGGCACAGAACATAAAGGTTTTCATTGCTGGGATCCCCTTTCTAATAGACTTCGTATATCTCGTCATGTCACATTTTGGGAGCACACTATGTTCTCTCGTTTGTCCTCCTTCCACACCTCCTTCTCTAGTCCTCAACCTTTCTTCACTGACACATCTATTGACCTTTTTCTTCTCTCCGAGTCCCCTCTTGGTAATGAGCTTGCTCAATCTGCACCTACTTCGGCAACCTCGGACCAATCATCCATCTCTGATGGTAGTTCTGAACCTACTCCAGACACCCCTCCTTATCGTTCTACTCGGGTAAGGGAACCTCCTATTCATCTCCAAGATTATCACTGTTTTTCCACTATTGTTTCCCTTGTTGAACCTACCTCTTATCAAGAGGCTAGTACTAACCCTTTATGGCAGAAAGCGATGAATGATGAATTACAGGCTCTTGAAAAGACGCATACTTAA

Coding sequence (CDS)

ATGATTCGCACCCAATTCTCTTGTCCCATCAAAACCCTTTGCACCAACAATGCCTTGGAGTATAAAGACTCCATTCTTCTATCTTTTCTCTCCCAACAGGGCAATCTTGTTCAGCGCTCCTGCCCCCACACTTCTCAACAAAATGGACGTGTTGAGCGCAAACATCGCCAAATTCTTGACTCAGTACGTGGCCTCCTTCTTTCTGCCTCATGCCCTGAGAAATTTTGGGGTGAAGCAGCTCTTACATCTGTCTATACTATCAATCGTCTTCCTTCCTCCGTTCTTCAGAATATCTCTCCATTCGAAAAACTATATGGTACTCCTCTCAACTATTCTAATCTTAAAACCTTCGGTTGTGCTTGCTTTGTTCTTCTGCATCCTCATGAACACACTAAACTTGAACCACGTGTCCACCTCTATTATTTTCTTGGCTATGGCACAGAACATAAAGGTTTTCATTGCTGGGATCCCCTTTCTAATAGACTTCGTATATCTCGTCATGTCACATTTTGGGAGCACACTATGTTCTCTCGTTTGTCCTCCTTCCACACCTCCTTCTCTAGTCCTCAACCTTTCTTCACTGACACATCTATTGACCTTTTTCTTCTCTCCGAGTCCCCTCTTGGTAATGAGCTTGCTCAATCTGCACCTACTTCGGCAACCTCGGACCAATCATCCATCTCTGATGGTAGTTCTGAACCTACTCCAGACACCCCTCCTTATCGTTCTACTCGGGTAAGGGAACCTCCTATTCATCTCCAAGATTATCACTGTTTTTCCACTATTGTTTCCCTTGTTGAACCTACCTCTTATCAAGAGGCTAGTACTAACCCTTTATGGCAGAAAGCGATGAATGATGAATTACAGGCTCTTGAAAAGACGCATACTTAA

Protein sequence

MIRTQFSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILDSVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTPLNYSNLKTFGCACFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSPQPFFTDTSIDLFLLSESPLGNELAQSAPTSATSDQSSISDGSSEPTPDTPPYRSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTNPLWQKAMNDELQALEKTHT

Homology

[Close]

BLAST of Cmc04g0102441 vs. NCBI nr
Match: TYJ98155.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 552.4 bits (1422), Expect = 2.4e-153
Identity = 273/296 (92.23%), Postives = 278/296 (93.92%), Query Frame = 0


Query: 1   MIRTQFSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILD 60
           MIRTQFSCPIKTL T+NALEYKDS LLSFLSQQG LVQRSCPHTSQQNGRVERKH  ILD
Sbjct: 401 MIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRVERKHLHILD 460

Query: 61  SVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTPLNYSNLKTFGCA 120
           SVR LLLSASCP+KFWGEAALTSVY+INRLPSSVLQNISPFEKLYGTP NYSNLKTFGCA
Sbjct: 461 SVRALLLSASCPKKFWGEAALTSVYSINRLPSSVLQNISPFEKLYGTPPNYSNLKTFGCA 520

Query: 121 CFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLS 180
           CFVLLHPHEHTKLEPR  L  FLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLS
Sbjct: 521 CFVLLHPHEHTKLEPRARLCCFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLS 580

Query: 181 SFHTSFSSPQPFFTDTSIDLFLLSESPLGNELAQSAPTSATSDQSSISDGSSEPTPDTPP 240
           SFHTSFSSPQPFFTDTSIDLF  SESPLGNELAQSAPTSA SDQSSI D S EPTPDTPP
Sbjct: 581 SFHTSFSSPQPFFTDTSIDLFPPSESPLGNELAQSAPTSAISDQSSIPDDSPEPTPDTPP 640

Query: 241 YRSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTNPLWQKAMNDELQALEKTHT 297
            RSTRVREPPIHLQDYHCFSTI+SLVEPTSYQEAST+PLWQKAMNDELQALEKTHT
Sbjct: 641 SRSTRVREPPIHLQDYHCFSTIISLVEPTSYQEASTDPLWQKAMNDELQALEKTHT 696

[Close]

BLAST of Cmc04g0102441 vs. NCBI nr
Match: KAA0064888.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 549.3 bits (1414), Expect = 2.1e-152
Identity = 272/296 (91.89%), Postives = 277/296 (93.58%), Query Frame = 0


Query: 1   MIRTQFSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILD 60
           MIRTQFSCPIKTL T+NALEYKDS LLSFLSQQG LVQRSCPHTSQQNGR ERKHR ILD
Sbjct: 1   MIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILD 60

Query: 61  SVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTPLNYSNLKTFGCA 120
           SVR LLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTP NYSNLKTFG A
Sbjct: 61  SVRALLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTPPNYSNLKTFGYA 120

Query: 121 CFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLS 180
           CFVLLHPHEHTKLEPR  L  FLGYGTEHKGF CWDPLSNRLRISRHVTFWEHTMFSRLS
Sbjct: 121 CFVLLHPHEHTKLEPRARLCCFLGYGTEHKGFRCWDPLSNRLRISRHVTFWEHTMFSRLS 180

Query: 181 SFHTSFSSPQPFFTDTSIDLFLLSESPLGNELAQSAPTSATSDQSSISDGSSEPTPDTPP 240
           SFHTSFSSPQPFFTDTSIDLF  SESP+GNELAQSAPTSATS+QSSIS GS EPTPDTPP
Sbjct: 181 SFHTSFSSPQPFFTDTSIDLFPPSESPIGNELAQSAPTSATSNQSSISGGSPEPTPDTPP 240

Query: 241 YRSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTNPLWQKAMNDELQALEKTHT 297
            RSTRVREPPIHLQDYHCFSTI+SLVEPTSYQEAS NP+WQKAMNDELQALEKTHT
Sbjct: 241 RRSTRVREPPIHLQDYHCFSTIISLVEPTSYQEASINPVWQKAMNDELQALEKTHT 296

[Close]

BLAST of Cmc04g0102441 vs. NCBI nr
Match: KAA0047306.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 548.9 bits (1413), Expect = 2.7e-152
Identity = 272/296 (91.89%), Postives = 277/296 (93.58%), Query Frame = 0


Query: 1   MIRTQFSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILD 60
           MIRTQFSCPIKTL T+NALEYKDS LLSFLSQQG LVQRSC HTSQQNGR ERKHR ILD
Sbjct: 481 MIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCAHTSQQNGRAERKHRHILD 540

Query: 61  SVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTPLNYSNLKTFGCA 120
           SVR LLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTP NYSNLKTFGCA
Sbjct: 541 SVRALLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTPPNYSNLKTFGCA 600

Query: 121 CFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLS 180
           CFVLLHPHEHTKLEPR  L  FLGYGTEHKGF CWDPLSNRLR+SRH+TFWEHTMFSRLS
Sbjct: 601 CFVLLHPHEHTKLEPRARLCCFLGYGTEHKGFRCWDPLSNRLRLSRHITFWEHTMFSRLS 660

Query: 181 SFHTSFSSPQPFFTDTSIDLFLLSESPLGNELAQSAPTSATSDQSSISDGSSEPTPDTPP 240
           SFHTSFSSPQ FFT+TSIDLF  SESPLGNELAQSAPTSATSDQSSISDGS EPTPDTPP
Sbjct: 661 SFHTSFSSPQAFFTNTSIDLFPPSESPLGNELAQSAPTSATSDQSSISDGSPEPTPDTPP 720

Query: 241 YRSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTNPLWQKAMNDELQALEKTHT 297
            RSTRVREPPIHLQDYH FSTI+SLVEPTSYQEASTNPLWQKAMNDELQALEKTHT
Sbjct: 721 RRSTRVREPPIHLQDYHYFSTIISLVEPTSYQEASTNPLWQKAMNDELQALEKTHT 776

[Close]

BLAST of Cmc04g0102441 vs. NCBI nr
Match: KAA0050251.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 548.5 bits (1412), Expect = 3.5e-152
Identity = 272/296 (91.89%), Postives = 277/296 (93.58%), Query Frame = 0


Query: 1   MIRTQFSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILD 60
           MIRTQFSCPIKTL T+NALEYKDS LLSFLSQQG LVQRSCPHTSQQNGRVERKH  ILD
Sbjct: 401 MIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRVERKHLHILD 460

Query: 61  SVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTPLNYSNLKTFGCA 120
           SVR LLLSASCP+KFWGEAALTSVY+INRLPSSVLQNISPFEKLYGTP NYSNLKTFGCA
Sbjct: 461 SVRALLLSASCPKKFWGEAALTSVYSINRLPSSVLQNISPFEKLYGTPPNYSNLKTFGCA 520

Query: 121 CFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLS 180
           CFVLLHPHEHTKLEPR  L  FLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLS
Sbjct: 521 CFVLLHPHEHTKLEPRARLCCFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLS 580

Query: 181 SFHTSFSSPQPFFTDTSIDLFLLSESPLGNELAQSAPTSATSDQSSISDGSSEPTPDTPP 240
           SFHTSFSSPQPFFTDTSIDLF  SESPLGNELAQSAPTSA SDQSSI D S EPTPDTPP
Sbjct: 581 SFHTSFSSPQPFFTDTSIDLFPPSESPLGNELAQSAPTSAISDQSSIPDDSPEPTPDTPP 640

Query: 241 YRSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTNPLWQKAMNDELQALEKTHT 297
            RSTRVREPPIHLQDYHCFSTI+SLVE TSYQEAST+PLWQKAMNDELQALEKTHT
Sbjct: 641 RRSTRVREPPIHLQDYHCFSTIISLVELTSYQEASTDPLWQKAMNDELQALEKTHT 696

[Close]

BLAST of Cmc04g0102441 vs. NCBI nr
Match: KAA0031710.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 542.7 bits (1397), Expect = 1.9e-150
Identity = 271/296 (91.55%), Postives = 274/296 (92.57%), Query Frame = 0


Query: 1   MIRTQFSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILD 60
           MIRT+FSCPIKTL  +NALEYKDS LLSFLSQQG LVQRSCPHTSQQNGR ERKHR ILD
Sbjct: 520 MIRTKFSCPIKTLRIDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILD 579

Query: 61  SVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTPLNYSNLKTFGCA 120
           SVR LLLSASCPEKFWGEAALTSVYTIN L SSVLQNISPFEKLYGT  NYSNLKTFGCA
Sbjct: 580 SVRALLLSASCPEKFWGEAALTSVYTINHLSSSVLQNISPFEKLYGTHPNYSNLKTFGCA 639

Query: 121 CFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLS 180
           CFVLLHPHEHTKLEPR  L  FLGYGTEHKGF CWDPLSNRLRISRHV FWEHTMFSRLS
Sbjct: 640 CFVLLHPHEHTKLEPRACLCCFLGYGTEHKGFRCWDPLSNRLRISRHVPFWEHTMFSRLS 699

Query: 181 SFHTSFSSPQPFFTDTSIDLFLLSESPLGNELAQSAPTSATSDQSSISDGSSEPTPDTPP 240
           SFHTSFSSPQPFFTDTSIDLF  SESPLGNELAQSAPTSATSDQSSISDGS EPTPDTPP
Sbjct: 700 SFHTSFSSPQPFFTDTSIDLFPPSESPLGNELAQSAPTSATSDQSSISDGSPEPTPDTPP 759

Query: 241 YRSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTNPLWQKAMNDELQALEKTHT 297
            RSTRVRE PIHLQDYHCFSTI+SLVEPTSYQEASTNPLWQKAMNDELQALEKTHT
Sbjct: 760 RRSTRVRELPIHLQDYHCFSTIISLVEPTSYQEASTNPLWQKAMNDELQALEKTHT 815

[Close]

BLAST of Cmc04g0102441 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 8.7e-29
Identity = 103/300 (34.33%), Postives = 137/300 (45.67%), Query Frame = 0


Query: 1   MIRTQFSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILD 60
           ++  +F   I TL ++N  E+   +L  +LSQ G     S PHT + NG  ERKHR I++
Sbjct: 556 LVENRFQTRIGTLYSDNGGEF--VVLRDYLSQHGISHFTSPPHTPEHNGLSERKHRHIVE 615

Query: 61  SVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTPLNYSNLKTFGCA 120
               LL  AS P+ +W  A   +VY INRLP+ +LQ  SPF+KL+G P NY  LK FGCA
Sbjct: 616 MGLTLLSHASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCA 675

Query: 121 CFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLS 180
           C+  L P+   KLE +     F+GY      + C    + RL  SRHV F E       +
Sbjct: 676 CYPWLRPYNRHKLEDKSKQCAFMGYSLTQSAYLCLHIPTGRLYTSRHVQFDERCFPFSTT 735

Query: 181 SFHTSFSSPQ--------PFFTDTSIDLFLLSESP-LGNELAQS-------APTSATSDQ 240
           +F  S S  Q        P  T       +L   P LG  L  S       +P   T   
Sbjct: 736 NFGVSTSQEQRSDSAPNWPSHTTLPTTPLVLPAPPCLGPHLDTSPRPPSSPSPLCTTQVS 795

Query: 241 SS-------ISDGSSEPTPDTPPYRSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTN 278
           SS        S  SSEPT   P +   +    P   Q+ +  S I++   P S    S N
Sbjct: 796 SSNLPSSSISSPSSSEPT--APSHNGPQPTAQPHQTQNSNSNSPILNNPNPNSPSPNSPN 851

[Close]

BLAST of Cmc04g0102441 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 6.2e-27
Identity = 91/281 (32.38%), Postives = 136/281 (48.40%), Query Frame = 0


Query: 1   MIRTQFSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILD 60
           ++  +F   I T  ++N  E+    L  + SQ G     S PHT + NG  ERKHR I++
Sbjct: 577 LLENRFQTRIGTFYSDNGGEF--VALWEYFSQHGISHLTSPPHTPEHNGLSERKHRHIVE 636

Query: 61  SVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTPLNYSNLKTFGCA 120
           +   LL  AS P+ +W  A   +VY INRLP+ +LQ  SPF+KL+GT  NY  L+ FGCA
Sbjct: 637 TGLTLLSHASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCA 696

Query: 121 CFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLS 180
           C+  L P+   KL+ +     FLGY      + C    ++RL ISRHV F E+      S
Sbjct: 697 CYPWLRPYNQHKLDDKSRQCVFLGYSLTQSAYLCLHLQTSRLYISRHVRFDENCF--PFS 756

Query: 181 SFHTSFSSPQPFFTDTSIDLFLLSESPLGNELAQSAPTSATSDQSSISDGSSEPTPDTPP 240
           ++  + S  Q    ++S        SP    L    P       S     ++ P+  + P
Sbjct: 757 NYLATLSPVQEQRRESS-----CVWSP-HTTLPTRTPVLPAPSCSDPHHAATPPSSPSAP 816

Query: 241 YRSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTNPLWQ 282
           +R+++V    +   D    S+  S  EPT+ ++    P  Q
Sbjct: 817 FRNSQVSSSNL---DSSFSSSFPSSPEPTAPRQNGPQPTTQ 844

[Close]

BLAST of Cmc04g0102441 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 1.2e-22
Identity = 89/300 (29.67%), Postives = 136/300 (45.33%), Query Frame = 0


Query: 10  IKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILDSVRGLLLSA 69
           +K L ++N  EY       + S  G   +++ P T Q NG  ER +R I++ VR +L  A
Sbjct: 544 LKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKVRSMLRMA 603

Query: 70  SCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTPLNYSNLKTFGCACFVLLHPHE 129
             P+ FWGEA  T+ Y INR PS  L    P        ++YS+LK FGC  F  +   +
Sbjct: 604 KLPKSFWGEAVQTACYLINRSPSVPLAFEIPERVWTNKEVSYSHLKVFGCRAFAHVPKEQ 663

Query: 130 HTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLSSFHTSFSSP 189
            TKL+ +     F+GYG E  G+  WDP+  ++  SR V F E  + +         +  
Sbjct: 664 RTKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRESEVRTAADMSEKVKNGI 723

Query: 190 QP-FFTDTSIDLFLLSESPLGNELAQSA--PTSATSDQSSISDGSSE---PTPDTPPYRS 249
            P F T  S      S     +E+++    P         + +G  E   PT     ++ 
Sbjct: 724 IPNFVTIPSTSNNPTSAESTTDEVSEQGEQPGEVIEQGEQLDEGVEEVEHPTQGEEQHQP 783

Query: 250 TRVREPPIHLQDYHCFSTIVSLV----EPTSYQEASTNP---LWQKAMNDELQALEKTHT 297
            R  E P  ++     ST   L+    EP S +E  ++P      KAM +E+++L+K  T
Sbjct: 784 LRRSERP-RVESRRYPSTEYVLISDDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGT 842

[Close]

BLAST of Cmc04g0102441 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 88.2 bits (217), Expect = 1.7e-16
Identity = 58/184 (31.52%), Postives = 89/184 (48.37%), Query Frame = 0


Query: 6   FSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILDSVRGL 65
           F+  +  L  +N  EY  + +  F  ++G     + PHT Q NG  ER  R I +  R +
Sbjct: 540 FNLKVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTM 599

Query: 66  LLSASCPEKFWGEAALTSVYTINRLPSSVLQNIS--PFEKLYGTPLNYSNLKTFGCACFV 125
           +  A   + FWGEA LT+ Y INR+PS  L + S  P+E  +       +L+ FG   +V
Sbjct: 600 VSGAKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGATVYV 659

Query: 126 LLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMF-SRLSSF 185
            +  ++  K + +     F+GY  E  GF  WD ++ +  ++R V   E  M  SR   F
Sbjct: 660 HI-KNKQGKFDDKSFKSIFVGY--EPNGFKLWDAVNEKFIVARDVVVDETNMVNSRAVKF 719

Query: 186 HTSF 187
            T F
Sbjct: 720 ETVF 720

[Close]

BLAST of Cmc04g0102441 vs. ExPASy TrEMBL
Match: A0A5D3BI36 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G00360 PE=4 SV=1)

HSP 1 Score: 552.4 bits (1422), Expect = 1.2e-153
Identity = 273/296 (92.23%), Postives = 278/296 (93.92%), Query Frame = 0


Query: 1   MIRTQFSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILD 60
           MIRTQFSCPIKTL T+NALEYKDS LLSFLSQQG LVQRSCPHTSQQNGRVERKH  ILD
Sbjct: 401 MIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRVERKHLHILD 460

Query: 61  SVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTPLNYSNLKTFGCA 120
           SVR LLLSASCP+KFWGEAALTSVY+INRLPSSVLQNISPFEKLYGTP NYSNLKTFGCA
Sbjct: 461 SVRALLLSASCPKKFWGEAALTSVYSINRLPSSVLQNISPFEKLYGTPPNYSNLKTFGCA 520

Query: 121 CFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLS 180
           CFVLLHPHEHTKLEPR  L  FLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLS
Sbjct: 521 CFVLLHPHEHTKLEPRARLCCFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLS 580

Query: 181 SFHTSFSSPQPFFTDTSIDLFLLSESPLGNELAQSAPTSATSDQSSISDGSSEPTPDTPP 240
           SFHTSFSSPQPFFTDTSIDLF  SESPLGNELAQSAPTSA SDQSSI D S EPTPDTPP
Sbjct: 581 SFHTSFSSPQPFFTDTSIDLFPPSESPLGNELAQSAPTSAISDQSSIPDDSPEPTPDTPP 640

Query: 241 YRSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTNPLWQKAMNDELQALEKTHT 297
            RSTRVREPPIHLQDYHCFSTI+SLVEPTSYQEAST+PLWQKAMNDELQALEKTHT
Sbjct: 641 SRSTRVREPPIHLQDYHCFSTIISLVEPTSYQEASTDPLWQKAMNDELQALEKTHT 696

[Close]

BLAST of Cmc04g0102441 vs. ExPASy TrEMBL
Match: A0A5A7VBA1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G002020 PE=4 SV=1)

HSP 1 Score: 549.3 bits (1414), Expect = 1.0e-152
Identity = 272/296 (91.89%), Postives = 277/296 (93.58%), Query Frame = 0


Query: 1   MIRTQFSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILD 60
           MIRTQFSCPIKTL T+NALEYKDS LLSFLSQQG LVQRSCPHTSQQNGR ERKHR ILD
Sbjct: 1   MIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILD 60

Query: 61  SVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTPLNYSNLKTFGCA 120
           SVR LLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTP NYSNLKTFG A
Sbjct: 61  SVRALLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTPPNYSNLKTFGYA 120

Query: 121 CFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLS 180
           CFVLLHPHEHTKLEPR  L  FLGYGTEHKGF CWDPLSNRLRISRHVTFWEHTMFSRLS
Sbjct: 121 CFVLLHPHEHTKLEPRARLCCFLGYGTEHKGFRCWDPLSNRLRISRHVTFWEHTMFSRLS 180

Query: 181 SFHTSFSSPQPFFTDTSIDLFLLSESPLGNELAQSAPTSATSDQSSISDGSSEPTPDTPP 240
           SFHTSFSSPQPFFTDTSIDLF  SESP+GNELAQSAPTSATS+QSSIS GS EPTPDTPP
Sbjct: 181 SFHTSFSSPQPFFTDTSIDLFPPSESPIGNELAQSAPTSATSNQSSISGGSPEPTPDTPP 240

Query: 241 YRSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTNPLWQKAMNDELQALEKTHT 297
            RSTRVREPPIHLQDYHCFSTI+SLVEPTSYQEAS NP+WQKAMNDELQALEKTHT
Sbjct: 241 RRSTRVREPPIHLQDYHCFSTIISLVEPTSYQEASINPVWQKAMNDELQALEKTHT 296

[Close]

BLAST of Cmc04g0102441 vs. ExPASy TrEMBL
Match: A0A5A7TZC4 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001220 PE=4 SV=1)

HSP 1 Score: 548.9 bits (1413), Expect = 1.3e-152
Identity = 272/296 (91.89%), Postives = 277/296 (93.58%), Query Frame = 0


Query: 1   MIRTQFSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILD 60
           MIRTQFSCPIKTL T+NALEYKDS LLSFLSQQG LVQRSC HTSQQNGR ERKHR ILD
Sbjct: 481 MIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCAHTSQQNGRAERKHRHILD 540

Query: 61  SVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTPLNYSNLKTFGCA 120
           SVR LLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTP NYSNLKTFGCA
Sbjct: 541 SVRALLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTPPNYSNLKTFGCA 600

Query: 121 CFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLS 180
           CFVLLHPHEHTKLEPR  L  FLGYGTEHKGF CWDPLSNRLR+SRH+TFWEHTMFSRLS
Sbjct: 601 CFVLLHPHEHTKLEPRARLCCFLGYGTEHKGFRCWDPLSNRLRLSRHITFWEHTMFSRLS 660

Query: 181 SFHTSFSSPQPFFTDTSIDLFLLSESPLGNELAQSAPTSATSDQSSISDGSSEPTPDTPP 240
           SFHTSFSSPQ FFT+TSIDLF  SESPLGNELAQSAPTSATSDQSSISDGS EPTPDTPP
Sbjct: 661 SFHTSFSSPQAFFTNTSIDLFPPSESPLGNELAQSAPTSATSDQSSISDGSPEPTPDTPP 720

Query: 241 YRSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTNPLWQKAMNDELQALEKTHT 297
            RSTRVREPPIHLQDYH FSTI+SLVEPTSYQEASTNPLWQKAMNDELQALEKTHT
Sbjct: 721 RRSTRVREPPIHLQDYHYFSTIISLVEPTSYQEASTNPLWQKAMNDELQALEKTHT 776

[Close]

BLAST of Cmc04g0102441 vs. ExPASy TrEMBL
Match: A0A5A7U9P9 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold355G00970 PE=4 SV=1)

HSP 1 Score: 548.5 bits (1412), Expect = 1.7e-152
Identity = 272/296 (91.89%), Postives = 277/296 (93.58%), Query Frame = 0


Query: 1   MIRTQFSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILD 60
           MIRTQFSCPIKTL T+NALEYKDS LLSFLSQQG LVQRSCPHTSQQNGRVERKH  ILD
Sbjct: 401 MIRTQFSCPIKTLRTDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRVERKHLHILD 460

Query: 61  SVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTPLNYSNLKTFGCA 120
           SVR LLLSASCP+KFWGEAALTSVY+INRLPSSVLQNISPFEKLYGTP NYSNLKTFGCA
Sbjct: 461 SVRALLLSASCPKKFWGEAALTSVYSINRLPSSVLQNISPFEKLYGTPPNYSNLKTFGCA 520

Query: 121 CFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLS 180
           CFVLLHPHEHTKLEPR  L  FLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLS
Sbjct: 521 CFVLLHPHEHTKLEPRARLCCFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLS 580

Query: 181 SFHTSFSSPQPFFTDTSIDLFLLSESPLGNELAQSAPTSATSDQSSISDGSSEPTPDTPP 240
           SFHTSFSSPQPFFTDTSIDLF  SESPLGNELAQSAPTSA SDQSSI D S EPTPDTPP
Sbjct: 581 SFHTSFSSPQPFFTDTSIDLFPPSESPLGNELAQSAPTSAISDQSSIPDDSPEPTPDTPP 640

Query: 241 YRSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTNPLWQKAMNDELQALEKTHT 297
            RSTRVREPPIHLQDYHCFSTI+SLVE TSYQEAST+PLWQKAMNDELQALEKTHT
Sbjct: 641 RRSTRVREPPIHLQDYHCFSTIISLVELTSYQEASTDPLWQKAMNDELQALEKTHT 696

[Close]

BLAST of Cmc04g0102441 vs. ExPASy TrEMBL
Match: A0A5A7SLT8 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G004960 PE=4 SV=1)

HSP 1 Score: 542.7 bits (1397), Expect = 9.3e-151
Identity = 271/296 (91.55%), Postives = 274/296 (92.57%), Query Frame = 0


Query: 1   MIRTQFSCPIKTLCTNNALEYKDSILLSFLSQQGNLVQRSCPHTSQQNGRVERKHRQILD 60
           MIRT+FSCPIKTL  +NALEYKDS LLSFLSQQG LVQRSCPHTSQQNGR ERKHR ILD
Sbjct: 520 MIRTKFSCPIKTLRIDNALEYKDSTLLSFLSQQGTLVQRSCPHTSQQNGRAERKHRHILD 579

Query: 61  SVRGLLLSASCPEKFWGEAALTSVYTINRLPSSVLQNISPFEKLYGTPLNYSNLKTFGCA 120
           SVR LLLSASCPEKFWGEAALTSVYTIN L SSVLQNISPFEKLYGT  NYSNLKTFGCA
Sbjct: 580 SVRALLLSASCPEKFWGEAALTSVYTINHLSSSVLQNISPFEKLYGTHPNYSNLKTFGCA 639

Query: 121 CFVLLHPHEHTKLEPRVHLYYFLGYGTEHKGFHCWDPLSNRLRISRHVTFWEHTMFSRLS 180
           CFVLLHPHEHTKLEPR  L  FLGYGTEHKGF CWDPLSNRLRISRHV FWEHTMFSRLS
Sbjct: 640 CFVLLHPHEHTKLEPRACLCCFLGYGTEHKGFRCWDPLSNRLRISRHVPFWEHTMFSRLS 699

Query: 181 SFHTSFSSPQPFFTDTSIDLFLLSESPLGNELAQSAPTSATSDQSSISDGSSEPTPDTPP 240
           SFHTSFSSPQPFFTDTSIDLF  SESPLGNELAQSAPTSATSDQSSISDGS EPTPDTPP
Sbjct: 700 SFHTSFSSPQPFFTDTSIDLFPPSESPLGNELAQSAPTSATSDQSSISDGSPEPTPDTPP 759

Query: 241 YRSTRVREPPIHLQDYHCFSTIVSLVEPTSYQEASTNPLWQKAMNDELQALEKTHT 297
            RSTRVRE PIHLQDYHCFSTI+SLVEPTSYQEASTNPLWQKAMNDELQALEKTHT
Sbjct: 760 RRSTRVRELPIHLQDYHCFSTIISLVEPTSYQEASTNPLWQKAMNDELQALEKTHT 815

The following BLAST results are available for this feature:

BLAST of Cmc04g0102441 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ98155.1	2.4e-153	92.23	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0064888.1	2.1e-152	91.89	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0047306.1	2.7e-152	91.89	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0050251.1	3.5e-152	91.89	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0031710.1	1.9e-150	91.55	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]

BLAST of Cmc04g0102441 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZT94	8.7e-29	34.33	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	6.2e-27	32.38	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P10978	1.2e-22	29.67	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	1.7e-16	31.52	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of Cmc04g0102441 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BI36	1.2e-153	92.23	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7VBA1	1.0e-152	91.89	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7TZC4	1.3e-152	91.89	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7U9P9	1.7e-152	91.89	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SLT8	9.3e-151	91.55	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]

BLAST of Cmc04g0102441 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 1..109 e-value: 3.5E-17 score: 64.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 212..239
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 212..245
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 3..290
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 1..108 score: 11.393033
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 2..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0102441.1	Cmc04g0102441.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding