Cmc04g0101421 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0101421
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr04: 17722306 .. 17723175 (-)
RNA-Seq Expression	Cmc04g0101421
Synteny	Cmc04g0101421

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCCAGCTGAGTTAAAGGAGCTGAAGGTGCAGTTGCAAGAGTTGCTGGACAAGGGTTTTATTCGACCCAGTGTGTCACATTGGGGAGCACCAATGTTGTTCATAAAGAAGAAGGATGGGTCAATGCGCCTTTGCATTGACTACAGAGAGCTAAACAAGGTGACAGTCAAGAACCGGTACCCCTTGCCCAGGATTGATGATTTGTTTGATCAGTTGCAAGGAGCCACCGTCTTTTCTAAGATCGACCTACGATCAGGCTACCACCAGCTAAGGATCAGGGATAGTGATATTCCTATGACCGCTTTCCGTTCTAGATACGAGCATTACGAGTTCATTGTGATGTCCTTTGGTTTGACTAATGCTTCTGCGGCATTCATGGACTTGATGAACAGGGTGTTTAAGGACTTCTTAGACACGTTTGTCATAGTTTTTATTGACGACATTTTGATTTACTCCAAGACTGAGGCCGAGCATAAAGAGTATTTGCACCAGGTTTTGGAGGCTCTTCGAGCTAATAAGCTGTACTCCAAGTTCTCCAACTGTGAGTTCTGGCGGAAGAAGGTGACTTTCCTTGACCATGTGGTTTCCAGTGAGGGAGTTTCTGTGGACCCAACAAAGATCGAAGCGGTTACCAGTTGGCCTCGACTGTCTACGGTTAGCGACGTTCGTAGTTTCCTGGGTTTAGTAGGTTACTATAGGAGGTTCGTGGAAGATTTCTCTCGTATATCCAGTCCCTTGACTCAGTTGACCAGGAAGGGGACTCCTTTTGTTTGGAGCCAGCTTGTGAGAGTAGCTTCTAGGAGATTAAGTAGAAGCTTGTGTCTGCACCAGTCCTTACAGTACCAGATGGATCTGGGAGTTTTGTGA

mRNA sequence

ATGGCTCCAGCTGAGTTAAAGGAGCTGAAGGTGCAGTTGCAAGAGTTGCTGGACAAGGGTTTTATTCGACCCAGTGTGTCACATTGGGGAGCACCAATGTTGTTCATAAAGAAGAAGGATGGGTCAATGCGCCTTTGCATTGACTACAGAGAGCTAAACAAGGTGACAGTCAAGAACCGGTACCCCTTGCCCAGGATTGATGATTTGTTTGATCAGTTGCAAGGAGCCACCGTCTTTTCTAAGATCGACCTACGATCAGGCTACCACCAGCTAAGGATCAGGGATAGTGATATTCCTATGACCGCTTTCCGTTCTAGATACGAGCATTACGAGTTCATTGTGATGTCCTTTGGTTTGACTAATGCTTCTGCGGCATTCATGGACTTGATGAACAGGGTGTTTAAGGACTTCTTAGACACGTTTGTCATAGTTTTTATTGACGACATTTTGATTTACTCCAAGACTGAGGCCGAGCATAAAGAGTATTTGCACCAGGTTTTGGAGGCTCTTCGAGCTAATAAGCTGTACTCCAAGTTCTCCAACTGTGAGTTCTGGCGGAAGAAGGTGACTTTCCTTGACCATGTGGTTTCCAGTGAGGGAGTTTCTGTGGACCCAACAAAGATCGAAGCGGTTACCAGTTGGCCTCGACTGTCTACGGTTAGCGACGTTCGTAGTTTCCTGGGTTTAGTAGGTTACTATAGGAGGTTCGTGGAAGATTTCTCTCGTATATCCAGTCCCTTGACTCAGTTGACCAGGAAGGGGACTCCTTTTGTTTGGAGCCAGCTTGTGAGAGTAGCTTCTAGGAGATTAAGTAGAAGCTTGTGTCTGCACCAGTCCTTACAGTACCAGATGGATCTGGGAGTTTTGTGA

Coding sequence (CDS)

ATGGCTCCAGCTGAGTTAAAGGAGCTGAAGGTGCAGTTGCAAGAGTTGCTGGACAAGGGTTTTATTCGACCCAGTGTGTCACATTGGGGAGCACCAATGTTGTTCATAAAGAAGAAGGATGGGTCAATGCGCCTTTGCATTGACTACAGAGAGCTAAACAAGGTGACAGTCAAGAACCGGTACCCCTTGCCCAGGATTGATGATTTGTTTGATCAGTTGCAAGGAGCCACCGTCTTTTCTAAGATCGACCTACGATCAGGCTACCACCAGCTAAGGATCAGGGATAGTGATATTCCTATGACCGCTTTCCGTTCTAGATACGAGCATTACGAGTTCATTGTGATGTCCTTTGGTTTGACTAATGCTTCTGCGGCATTCATGGACTTGATGAACAGGGTGTTTAAGGACTTCTTAGACACGTTTGTCATAGTTTTTATTGACGACATTTTGATTTACTCCAAGACTGAGGCCGAGCATAAAGAGTATTTGCACCAGGTTTTGGAGGCTCTTCGAGCTAATAAGCTGTACTCCAAGTTCTCCAACTGTGAGTTCTGGCGGAAGAAGGTGACTTTCCTTGACCATGTGGTTTCCAGTGAGGGAGTTTCTGTGGACCCAACAAAGATCGAAGCGGTTACCAGTTGGCCTCGACTGTCTACGGTTAGCGACGTTCGTAGTTTCCTGGGTTTAGTAGGTTACTATAGGAGGTTCGTGGAAGATTTCTCTCGTATATCCAGTCCCTTGACTCAGTTGACCAGGAAGGGGACTCCTTTTGTTTGGAGCCAGCTTGTGAGAGTAGCTTCTAGGAGATTAAGTAGAAGCTTGTGTCTGCACCAGTCCTTACAGTACCAGATGGATCTGGGAGTTTTGTGA

Protein sequence

MAPAELKELKVQLQELLDKGFIRPSVSHWGAPMLFIKKKDGSMRLCIDYRELNKVTVKNRYPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPMTAFRSRYEHYEFIVMSFGLTNASAAFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHKEYLHQVLEALRANKLYSKFSNCEFWRKKVTFLDHVVSSEGVSVDPTKIEAVTSWPRLSTVSDVRSFLGLVGYYRRFVEDFSRISSPLTQLTRKGTPFVWSQLVRVASRRLSRSLCLHQSLQYQMDLGVL

Homology

[Close]

BLAST of Cmc04g0101421 vs. NCBI nr
Match: KAA0058450.1 (pol protein [Cucumis melo var. makuwa] >TYJ96712.1 pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 578.6 bits (1490), Expect = 3.1e-161
Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSHWGAPMLFIKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSHWGAPMLFIKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 410 MAPAELKELKVQLQELLDKGFIRPSVSHWGAPMLFIKKKDGSMRLCIDYRELNKVTVKNR 469

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPMTAFRSRYEHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPMTAFRSRYEHYEFIVMSFGLT
Sbjct: 470 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPMTAFRSRYEHYEFIVMSFGLT 529

Query: 121 NASAAFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHKEYLHQVLEALRANKLYSKFS 180
           NASAAFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHKEYLHQVLEALRANKLYSKFS
Sbjct: 530 NASAAFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHKEYLHQVLEALRANKLYSKFS 589

Query: 181 NCEFWRKKVTFLDHVVSSEGVSVDPTKIEAVTSWPRLSTVSDVRSFLGLVGYYRRFVEDF 240
           NCEFWRKKVTFLDHVVSSEGVSVDPTKIEAVTSWPRLSTVSDVRSFLGLVGYYRRFVEDF
Sbjct: 590 NCEFWRKKVTFLDHVVSSEGVSVDPTKIEAVTSWPRLSTVSDVRSFLGLVGYYRRFVEDF 649

Query: 241 SRISSPLTQLTRKGTPFVWSQLVRVASRRLSRSLCLHQSLQYQMDLGVL 290
           SRISSPLTQLTRKGTPFVWSQLVRVASRRLSRSLCLHQSLQYQMDLGVL
Sbjct: 650 SRISSPLTQLTRKGTPFVWSQLVRVASRRLSRSLCLHQSLQYQMDLGVL 698

[Close]

BLAST of Cmc04g0101421 vs. NCBI nr
Match: TYK18480.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 483.0 bits (1242), Expect = 1.8e-132
Identity = 239/274 (87.23%), Postives = 253/274 (92.34%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSHWGAPMLFIKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVS WGAP+LF+KKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 137 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 196

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPMTAFRSRYEHYEFIVMSFGLT 120
           YPL RIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIP TAFRSRY HYEFIVMSFGLT
Sbjct: 197 YPLLRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLT 256

Query: 121 NASAAFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHKEYLHQVLEALRANKLYSKFS 180
           NA A FMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEH+E+LHQVLE LRANKLY+KFS
Sbjct: 257 NAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 316

Query: 181 NCEFWRKKVTFLDHVVSSEGVSVDPTKIEAVTSWPRLSTVSDVRSFLGLVGYYRRFVEDF 240
            CEFW +KVTFL HVVSSEGVSVDPTKIEAVT+WPR STVS++RSFLGL GYYRRFVEDF
Sbjct: 317 KCEFWLRKVTFLGHVVSSEGVSVDPTKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 376

Query: 241 SRISSPLTQLTRKGTPFVWSQLVRVASRRLSRSL 275
           SRI+SPLTQLTRKGTPFVWS     + + L + L
Sbjct: 377 SRIASPLTQLTRKGTPFVWSPACESSFQELKQKL 410

[Close]

BLAST of Cmc04g0101421 vs. NCBI nr
Match: KAA0063793.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 482.6 bits (1241), Expect = 2.3e-132
Identity = 237/274 (86.50%), Postives = 252/274 (91.97%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSHWGAPMLFIKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVS WGAP+LF+KKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 137 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 196

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPMTAFRSRYEHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIP TAFRSRY HYEF+VMSFGLT
Sbjct: 197 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 256

Query: 121 NASAAFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHKEYLHQVLEALRANKLYSKFS 180
           NA A FMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEH+E+LHQVLE LRANKLY+KFS
Sbjct: 257 NAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 316

Query: 181 NCEFWRKKVTFLDHVVSSEGVSVDPTKIEAVTSWPRLSTVSDVRSFLGLVGYYRRFVEDF 240
            CEFW +KVTFL HVVSSEGVSVDP KIEAVT+WPR STVS++RSFLGL GYYRRFVEDF
Sbjct: 317 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 376

Query: 241 SRISSPLTQLTRKGTPFVWSQLVRVASRRLSRSL 275
           SRI+SPLTQLTRKGTPFVWS     + + L + L
Sbjct: 377 SRIASPLTQLTRKGTPFVWSPACERSFQELKQKL 410

[Close]

BLAST of Cmc04g0101421 vs. NCBI nr
Match: KAA0060745.1 (pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 482.3 bits (1240), Expect = 3.0e-132
Identity = 236/276 (85.51%), Postives = 253/276 (91.67%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSHWGAPMLFIKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVS WGAP+LF+KKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 571 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 630

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPMTAFRSRYEHYEFIVMSFGLT 120
           YPLP+IDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIP TAFRSRY HYEF+VMSFGLT
Sbjct: 631 YPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 690

Query: 121 NASAAFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHKEYLHQVLEALRANKLYSKFS 180
           NA A FMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEH+E+LHQVLE LRANKLY+KFS
Sbjct: 691 NAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 750

Query: 181 NCEFWRKKVTFLDHVVSSEGVSVDPTKIEAVTSWPRLSTVSDVRSFLGLVGYYRRFVEDF 240
            CEFW +KVTFL HVVSSEGVSVDP KIEAVT+WPR STVS++RSFLGL GYYRRFVEDF
Sbjct: 751 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 810

Query: 241 SRISSPLTQLTRKGTPFVWSQLVRVASRRLSRSLCL 277
           SRI+SPLTQLTRKGTPFVWS     + + L + L +
Sbjct: 811 SRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVI 846

[Close]

BLAST of Cmc04g0101421 vs. NCBI nr
Match: KAA0033091.1 (putative Gag-pol protein [Cucumis melo var. makuwa] >TYK04647.1 putative Gag-pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 481.9 bits (1239), Expect = 3.9e-132
Identity = 236/274 (86.13%), Postives = 252/274 (91.97%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSHWGAPMLFIKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVS WGAP+LF+KKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 74  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 133

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPMTAFRSRYEHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGAT+FSKIDLRSGYHQLRIRDS IP TAFRSRYEHYEFIVMSFGLT
Sbjct: 134 YPLPRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSSIPKTAFRSRYEHYEFIVMSFGLT 193

Query: 121 NASAAFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHKEYLHQVLEALRANKLYSKFS 180
           NA A FMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEH+E+LHQVLE LRAN+LY KFS
Sbjct: 194 NALAIFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANRLYVKFS 253

Query: 181 NCEFWRKKVTFLDHVVSSEGVSVDPTKIEAVTSWPRLSTVSDVRSFLGLVGYYRRFVEDF 240
            CEFW KKV+FL HVVSSEGVSVDP KIEA+T+WPR STVS++RSFLGL GYYRRFVEDF
Sbjct: 254 KCEFWLKKVSFLGHVVSSEGVSVDPAKIEAITNWPRSSTVSEIRSFLGLAGYYRRFVEDF 313

Query: 241 SRISSPLTQLTRKGTPFVWSQLVRVASRRLSRSL 275
           SRI+SPLTQLTRKGTPFVWS     + + L + L
Sbjct: 314 SRIASPLTQLTRKGTPFVWSSACESSFQELKQKL 347

[Close]

BLAST of Cmc04g0101421 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 8.7e-50
Identity = 93/252 (36.90%), Postives = 162/252 (64.29%), Query Frame = 0


Query: 7   KELKVQLQELLDKGFIRPSVSHWGAPMLFI-KKKDGS----MRLCIDYRELNKVTVKNRY 66
           +E++ Q+Q++L++G IR S S + +P+  + KK+D S     R+ IDYR+LN++TV +R+
Sbjct: 221 QEVESQIQDMLNQGIIRTSNSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLNEITVGDRH 280

Query: 67  PLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPMTAFRSRYEHYEFIVMSFGLTN 126
           P+P +D++  +L     F+ IDL  G+HQ+ +    +  TAF +++ HYE++ M FGL N
Sbjct: 281 PIPNMDEILGKLGRCNYFTTIDLAKGFHQIEMDPESVSKTAFSTKHGHYEYLRMPFGLKN 340

Query: 127 ASAAFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHKEYLHQVLEALRANKLYSKFSN 186
           A A F   MN + +  L+   +V++DDI+++S +  EH + L  V E L    L  +   
Sbjct: 341 APATFQRCMNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDK 400

Query: 187 CEFWRKKVTFLDHVVSSEGVSVDPTKIEAVTSWPRLSTVSDVRSFLGLVGYYRRFVEDFS 246
           CEF +++ TFL HV++ +G+  +P KIEA+  +P  +   ++++FLGL GYYR+F+ +F+
Sbjct: 401 CEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFA 460

Query: 247 RISSPLTQLTRK 254
            I+ P+T+  +K
Sbjct: 461 DIAKPMTKCLKK 472

[Close]

BLAST of Cmc04g0101421 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.5e-49
Identity = 92/253 (36.36%), Postives = 155/253 (61.26%), Query Frame = 0


Query: 8   ELKVQLQELLDKGFIRPSVSHWGAPMLFIKKKD-----GSMRLCIDYRELNKVTVKNRYP 67
           E++ Q+QE+L++G IR S S + +P   + KK         R+ IDYR+LN++T+ +RYP
Sbjct: 221 EVENQVQEMLNQGLIRESNSPYNSPTWVVPKKPDASGANKYRVVIDYRKLNEITIPDRYP 280

Query: 68  LPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPMTAFRSRYEHYEFIVMSFGLTNA 127
           +P +D++  +L     F+ IDL  G+HQ+ + +  I  TAF ++  HYE++ M FGL NA
Sbjct: 281 IPNMDEILGKLGKCQYFTTIDLAKGFHQIEMDEESISKTAFSTKSGHYEYLRMPFGLRNA 340

Query: 128 SAAFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHKEYLHQVLEALRANKLYSKFSNC 187
            A F   MN + +  L+   +V++DDI+I+S +  EH   +  V   L    L  +   C
Sbjct: 341 PATFQRCMNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKC 400

Query: 188 EFWRKKVTFLDHVVSSEGVSVDPTKIEAVTSWPRLSTVSDVRSFLGLVGYYRRFVEDFSR 247
           EF +K+  FL H+V+ +G+  +P K++A+ S+P  +   ++R+FLGL GYYR+F+ +++ 
Sbjct: 401 EFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYAD 460

Query: 248 ISSPLTQLTRKGT 256
           I+ P+T   +K T
Sbjct: 461 IAKPMTSCLKKRT 473

[Close]

BLAST of Cmc04g0101421 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 191.8 bits (486), Expect = 1.1e-47
Identity = 101/269 (37.55%), Postives = 157/269 (58.36%), Query Frame = 0


Query: 7   KELKVQLQELLDKGFIRPSVSHWGAPMLFIKKKDGSMRLCIDYRELNKVTVKNRYPLPRI 66
           +E+   +Q+LLD  FI PS S   +P++ + KKDG+ RLC+DYR LNK T+ + +PLPRI
Sbjct: 636 QEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRI 695

Query: 67  DDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPMTAFRSRYEHYEFIVMSFGLTNASAAF 126
           D+L  ++  A +F+ +DL SGYHQ+ +   D   TAF +    YE+ VM FGL NA + F
Sbjct: 696 DNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTF 755

Query: 127 MDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHKEYLHQVLEALRANKLYSKFSNCEFWR 186
              M   F+D    FV V++DDILI+S++  EH ++L  VLE L+   L  K   C+F  
Sbjct: 756 ARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFAS 815

Query: 187 KKVTFLDHVVSSEGVSVDPTKIEAVTSWPRLSTVSDVRSFLGLVGYYRRFVEDFSRISSP 246
           ++  FL + +  + ++    K  A+  +P   TV   + FLG++ YYRRF+ + S+I+ P
Sbjct: 816 EETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQP 875

Query: 247 LTQLTRKGTPFVWSQLVRVASRRLSRSLC 276
           +       +   W++    A  +L  +LC
Sbjct: 876 IQLFICDKSQ--WTEKQDKAIEKLKAALC 900

[Close]

BLAST of Cmc04g0101421 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 190.7 bits (483), Expect = 2.4e-47
Identity = 101/269 (37.55%), Postives = 157/269 (58.36%), Query Frame = 0


Query: 7   KELKVQLQELLDKGFIRPSVSHWGAPMLFIKKKDGSMRLCIDYRELNKVTVKNRYPLPRI 66
           +E+   +Q+LLD  FI PS S   +P++ + KKDG+ RLC+DYR LNK T+ + +PLPRI
Sbjct: 610 QEINKIVQKLLDNKFIVPSKSPCSSPVVLVPKKDGTFRLCVDYRTLNKATISDPFPLPRI 669

Query: 67  DDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPMTAFRSRYEHYEFIVMSFGLTNASAAF 126
           D+L  ++  A +F+ +DL SGYHQ+ +   D   TAF +    YE+ VM FGL NA + F
Sbjct: 670 DNLLSRIGNAQIFTTLDLHSGYHQIPMEPKDRYKTAFVTPSGKYEYTVMPFGLVNAPSTF 729

Query: 127 MDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHKEYLHQVLEALRANKLYSKFSNCEFWR 186
              M   F+D    FV V++DDILI+S++  EH ++L  VLE L+   L  K   C+F  
Sbjct: 730 ARYMADTFRDL--RFVNVYLDDILIFSESPEEHWKHLDTVLERLKNENLIVKKKKCKFAS 789

Query: 187 KKVTFLDHVVSSEGVSVDPTKIEAVTSWPRLSTVSDVRSFLGLVGYYRRFVEDFSRISSP 246
           ++  FL + +  + ++    K  A+  +P   TV   + FLG++ YYRRF+ + S+I+ P
Sbjct: 790 EETEFLGYSIGIQKIAPLQHKCAAIRDFPTPKTVKQAQRFLGMINYYRRFIPNCSKIAQP 849

Query: 247 LTQLTRKGTPFVWSQLVRVASRRLSRSLC 276
           +       +   W++    A  +L  +LC
Sbjct: 850 IQLFICDKSQ--WTEKQDKAIDKLKDALC 874

[Close]

BLAST of Cmc04g0101421 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 187.2 bits (474), Expect = 2.6e-46
Identity = 89/274 (32.48%), Postives = 161/274 (58.76%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSHWGAPMLFIKKKDGSMRLCIDYRELNKVTVKNR 60
           + P +++ +  ++ + L  G IR S +    P++F+ KK+G++R+ +DY+ LNK    N 
Sbjct: 420 LPPGKMQAMNDEINQGLKSGIIRESKAINACPVMFVPKKEGTLRMVVDYKPLNKYVKPNI 479

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPMTAFRSRYEHYEFIVMSFGLT 120
           YPLP I+ L  ++QG+T+F+K+DL+S YH +R+R  D    AFR     +E++VM +G++
Sbjct: 480 YPLPLIEQLLAKIQGSTIFTKLDLKSAYHLIRVRKGDEHKLAFRCPRGVFEYLVMPYGIS 539

Query: 121 NASAAFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHKEYLHQVLEALRANKLYSKFS 180
            A A F   +N +  +  ++ V+ ++DDILI+SK+E+EH +++  VL+ L+   L    +
Sbjct: 540 TAPAHFQYFINTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQA 599

Query: 181 NCEFWRKKVTFLDHVVSSEGVSVDPTKIEAVTSWPRLSTVSDVRSFLGLVGYYRRFVEDF 240
            CEF + +V F+ + +S +G +     I+ V  W +     ++R FLG V Y R+F+   
Sbjct: 600 KCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKT 659

Query: 241 SRISSPLTQLTRKGTPFVWSQLVRVASRRLSRSL 275
           S+++ PL  L +K   + W+     A   + + L
Sbjct: 660 SQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCL 693

[Close]

BLAST of Cmc04g0101421 vs. ExPASy TrEMBL
Match: A0A5D3BA18 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold535G00290 PE=4 SV=1)

HSP 1 Score: 578.6 bits (1490), Expect = 1.5e-161
Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSHWGAPMLFIKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVSHWGAPMLFIKKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 410 MAPAELKELKVQLQELLDKGFIRPSVSHWGAPMLFIKKKDGSMRLCIDYRELNKVTVKNR 469

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPMTAFRSRYEHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPMTAFRSRYEHYEFIVMSFGLT
Sbjct: 470 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPMTAFRSRYEHYEFIVMSFGLT 529

Query: 121 NASAAFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHKEYLHQVLEALRANKLYSKFS 180
           NASAAFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHKEYLHQVLEALRANKLYSKFS
Sbjct: 530 NASAAFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHKEYLHQVLEALRANKLYSKFS 589

Query: 181 NCEFWRKKVTFLDHVVSSEGVSVDPTKIEAVTSWPRLSTVSDVRSFLGLVGYYRRFVEDF 240
           NCEFWRKKVTFLDHVVSSEGVSVDPTKIEAVTSWPRLSTVSDVRSFLGLVGYYRRFVEDF
Sbjct: 590 NCEFWRKKVTFLDHVVSSEGVSVDPTKIEAVTSWPRLSTVSDVRSFLGLVGYYRRFVEDF 649

Query: 241 SRISSPLTQLTRKGTPFVWSQLVRVASRRLSRSLCLHQSLQYQMDLGVL 290
           SRISSPLTQLTRKGTPFVWSQLVRVASRRLSRSLCLHQSLQYQMDLGVL
Sbjct: 650 SRISSPLTQLTRKGTPFVWSQLVRVASRRLSRSLCLHQSLQYQMDLGVL 698

[Close]

BLAST of Cmc04g0101421 vs. ExPASy TrEMBL
Match: A0A5D3D4M7 (Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold607G00520 PE=4 SV=1)

HSP 1 Score: 483.0 bits (1242), Expect = 8.6e-133
Identity = 239/274 (87.23%), Postives = 253/274 (92.34%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSHWGAPMLFIKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVS WGAP+LF+KKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 137 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 196

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPMTAFRSRYEHYEFIVMSFGLT 120
           YPL RIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIP TAFRSRY HYEFIVMSFGLT
Sbjct: 197 YPLLRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPKTAFRSRYGHYEFIVMSFGLT 256

Query: 121 NASAAFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHKEYLHQVLEALRANKLYSKFS 180
           NA A FMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEH+E+LHQVLE LRANKLY+KFS
Sbjct: 257 NAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 316

Query: 181 NCEFWRKKVTFLDHVVSSEGVSVDPTKIEAVTSWPRLSTVSDVRSFLGLVGYYRRFVEDF 240
            CEFW +KVTFL HVVSSEGVSVDPTKIEAVT+WPR STVS++RSFLGL GYYRRFVEDF
Sbjct: 317 KCEFWLRKVTFLGHVVSSEGVSVDPTKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 376

Query: 241 SRISSPLTQLTRKGTPFVWSQLVRVASRRLSRSL 275
           SRI+SPLTQLTRKGTPFVWS     + + L + L
Sbjct: 377 SRIASPLTQLTRKGTPFVWSPACESSFQELKQKL 410

[Close]

BLAST of Cmc04g0101421 vs. ExPASy TrEMBL
Match: A0A5A7V6R2 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold827G00070 PE=4 SV=1)

HSP 1 Score: 482.6 bits (1241), Expect = 1.1e-132
Identity = 237/274 (86.50%), Postives = 252/274 (91.97%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSHWGAPMLFIKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVS WGAP+LF+KKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 137 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 196

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPMTAFRSRYEHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIP TAFRSRY HYEF+VMSFGLT
Sbjct: 197 YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 256

Query: 121 NASAAFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHKEYLHQVLEALRANKLYSKFS 180
           NA A FMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEH+E+LHQVLE LRANKLY+KFS
Sbjct: 257 NAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 316

Query: 181 NCEFWRKKVTFLDHVVSSEGVSVDPTKIEAVTSWPRLSTVSDVRSFLGLVGYYRRFVEDF 240
            CEFW +KVTFL HVVSSEGVSVDP KIEAVT+WPR STVS++RSFLGL GYYRRFVEDF
Sbjct: 317 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 376

Query: 241 SRISSPLTQLTRKGTPFVWSQLVRVASRRLSRSL 275
           SRI+SPLTQLTRKGTPFVWS     + + L + L
Sbjct: 377 SRIASPLTQLTRKGTPFVWSPACERSFQELKQKL 410

[Close]

BLAST of Cmc04g0101421 vs. ExPASy TrEMBL
Match: A0A5A7V4E4 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72G00400 PE=4 SV=1)

HSP 1 Score: 482.3 bits (1240), Expect = 1.5e-132
Identity = 236/276 (85.51%), Postives = 253/276 (91.67%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSHWGAPMLFIKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVS WGAP+LF+KKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 571 MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 630

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPMTAFRSRYEHYEFIVMSFGLT 120
           YPLP+IDDLFDQLQGATVFSKIDLRSGYHQLRIRD DIP TAFRSRY HYEF+VMSFGLT
Sbjct: 631 YPLPKIDDLFDQLQGATVFSKIDLRSGYHQLRIRDGDIPKTAFRSRYGHYEFVVMSFGLT 690

Query: 121 NASAAFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHKEYLHQVLEALRANKLYSKFS 180
           NA A FMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEH+E+LHQVLE LRANKLY+KFS
Sbjct: 691 NAPAVFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANKLYAKFS 750

Query: 181 NCEFWRKKVTFLDHVVSSEGVSVDPTKIEAVTSWPRLSTVSDVRSFLGLVGYYRRFVEDF 240
            CEFW +KVTFL HVVSSEGVSVDP KIEAVT+WPR STVS++RSFLGL GYYRRFVEDF
Sbjct: 751 KCEFWLRKVTFLGHVVSSEGVSVDPAKIEAVTNWPRPSTVSEIRSFLGLAGYYRRFVEDF 810

Query: 241 SRISSPLTQLTRKGTPFVWSQLVRVASRRLSRSLCL 277
           SRI+SPLTQLTRKGTPFVWS     + + L + L +
Sbjct: 811 SRIASPLTQLTRKGTPFVWSPACESSFQELKQKLVI 846

[Close]

BLAST of Cmc04g0101421 vs. ExPASy TrEMBL
Match: A0A5A7SUC9 (Putative Gag-pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold2137G00260 PE=4 SV=1)

HSP 1 Score: 481.9 bits (1239), Expect = 1.9e-132
Identity = 236/274 (86.13%), Postives = 252/274 (91.97%), Query Frame = 0


Query: 1   MAPAELKELKVQLQELLDKGFIRPSVSHWGAPMLFIKKKDGSMRLCIDYRELNKVTVKNR 60
           MAPAELKELKVQLQELLDKGFIRPSVS WGAP+LF+KKKDGSMRLCIDYRELNKVTVKNR
Sbjct: 74  MAPAELKELKVQLQELLDKGFIRPSVSPWGAPVLFVKKKDGSMRLCIDYRELNKVTVKNR 133

Query: 61  YPLPRIDDLFDQLQGATVFSKIDLRSGYHQLRIRDSDIPMTAFRSRYEHYEFIVMSFGLT 120
           YPLPRIDDLFDQLQGAT+FSKIDLRSGYHQLRIRDS IP TAFRSRYEHYEFIVMSFGLT
Sbjct: 134 YPLPRIDDLFDQLQGATIFSKIDLRSGYHQLRIRDSSIPKTAFRSRYEHYEFIVMSFGLT 193

Query: 121 NASAAFMDLMNRVFKDFLDTFVIVFIDDILIYSKTEAEHKEYLHQVLEALRANKLYSKFS 180
           NA A FMDLMNRVFKDFLD+FVIVFIDDILIYSKTEAEH+E+LHQVLE LRAN+LY KFS
Sbjct: 194 NALAIFMDLMNRVFKDFLDSFVIVFIDDILIYSKTEAEHEEHLHQVLETLRANRLYVKFS 253

Query: 181 NCEFWRKKVTFLDHVVSSEGVSVDPTKIEAVTSWPRLSTVSDVRSFLGLVGYYRRFVEDF 240
            CEFW KKV+FL HVVSSEGVSVDP KIEA+T+WPR STVS++RSFLGL GYYRRFVEDF
Sbjct: 254 KCEFWLKKVSFLGHVVSSEGVSVDPAKIEAITNWPRSSTVSEIRSFLGLAGYYRRFVEDF 313

Query: 241 SRISSPLTQLTRKGTPFVWSQLVRVASRRLSRSL 275
           SRI+SPLTQLTRKGTPFVWS     + + L + L
Sbjct: 314 SRIASPLTQLTRKGTPFVWSSACESSFQELKQKL 347

[Close]

BLAST of Cmc04g0101421 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 90.5 bits (223), Expect = 2.4e-18
Identity = 41/111 (36.94%), Postives = 69/111 (62.16%), Query Frame = 0


Query: 162 YLHQVLEALRANKLYSKFSNCEFWRKKVTFLD--HVVSSEGVSVDPTKIEAVTSWPRLST 221
           +L  VL+    ++ Y+    C F + ++ +L   H++S EGVS DP K+EA+  WP    
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 222 VSDVRSFLGLVGYYRRFVEDFSRISSPLTQLTRKGTPFVWSQLVRVASRRL 271
            +++R FLGL GYYRRFV+++ +I  PLT+L +K +   W+++  +A + L
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNS-LKWTEMAALAFKAL 112

The following BLAST results are available for this feature:

BLAST of Cmc04g0101421 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0058450.1	3.1e-161	100.00	pol protein [Cucumis melo var. makuwa] >TYJ96712.1 pol protein [Cucumis melo var...	[more]
TYK18480.1	1.8e-132	87.23	pol protein [Cucumis melo var. makuwa]	[more]
KAA0063793.1	2.3e-132	86.50	pol protein [Cucumis melo var. makuwa]	[more]
KAA0060745.1	3.0e-132	85.51	pol protein [Cucumis melo var. makuwa]	[more]
KAA0033091.1	3.9e-132	86.13	putative Gag-pol protein [Cucumis melo var. makuwa] >TYK04647.1 putative Gag-pol...	[more]

BLAST of Cmc04g0101421 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04323	8.7e-50	36.90	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P20825	2.5e-49	36.36	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
Q7LHG5	1.1e-47	37.55	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q99315	2.4e-47	37.55	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
P0CT41	2.6e-46	32.48	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc04g0101421 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BA18	1.5e-161	100.00	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold535G00290 PE...	[more]
A0A5D3D4M7	8.6e-133	87.23	Pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold607G00520 PE...	[more]
A0A5A7V6R2	1.1e-132	86.50	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82...	[more]
A0A5A7V4E4	1.5e-132	85.51	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold72...	[more]
A0A5A7SUC9	1.9e-132	86.13	Putative Gag-pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]

BLAST of Cmc04g0101421 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	2.4e-18	36.94	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000477	Reverse transcriptase domain	PFAM	PF00078	RVT_1	coord: 36..192 e-value: 4.8E-23 score: 81.8
IPR000477	Reverse transcriptase domain	PROSITE	PS50878	RT_POL	coord: 17..196 score: 8.650128
None	No IPR available	GENE3D	3.10.10.10	HIV Type 1 Reverse Transcriptase, subunit A, domain 1	coord: 1..121 e-value: 5.8E-80 score: 269.6
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 2..255
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 2..255
None	No IPR available	CDD	cd01647	RT_LTR	coord: 20..196 e-value: 1.22999E-89 score: 262.531
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 206..286 e-value: 1.3E-20 score: 75.1
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 61..196 e-value: 5.8E-80 score: 269.6
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..282

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0101421.1	Cmc04g0101421.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding