Cmc04g0101331 (gene) Melon (Charmono) v1.1

Overview
NameCmc04g0101331
Typegene
OrganismCucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
DescriptionBeta-galactosidase
LocationCMiso1.1chr04: 17617733 .. 17618548 (-)
RNA-Seq ExpressionCmc04g0101331
SyntenyCmc04g0101331
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTGATGAATTTGAAATCAAGGATTTGGGAAATCTGAAATATTTCCTTAGAATGGAGGTGACTAGATCTAAAGAAGATATCTCCGTATCTCAGAGAAAATACACCCTTGATTTGCTAACCAGGACAGGTATGTTGGGATGTCTTCCTGCTGATACACCTACTAAATTCAATTGTAAACTAGGAAACTCTGATGATCAAGCTCCAGTTGATAAAGAACAATATCAGCGCCTTGTAGGTAAATTAATTTACTTATCCCATACTCATTCTGATATTTCCTTTACTATGAGTGTTTGTAGCTAGTTTATGCAGGCTCCAAATGAGAAACATATGGAAGTTGTTAACAGAATTTTGAGATACTTGAAAAATACACCTGGTAAAGGGTTGATGTTTAGAAAAACAAATAGAAAGACCATTGAAGCATATACTGACTCCGATTTGATAGGATTTGTTGTTGATAGAAAGTCTACCTCCGGTTATTGTACCTTTGTTTGGGGCAATCTTGTAACTTGGAGGAGTAAGAAGCAAAGTGTTGTGGCCAGGAGCAGTGTTGAGGCTGAATACAGAGCTATGAGTTTGGGAATATGTGAGGAAATTTGGCTCCAGAAAGTCTTGTCAGATCTTCATCAGGAATGTGAGACACCATTGAAGCTTTTTGTGATAATAAAGTTGCTATTAGTATTGCTAACAACCCAGTTCAACATGATAGAACTAAACATGTTGAGATTGATTGGCATTTCATCAAAGAAAGACTTGACAGTGGAAGCATATGCATTCCGTACATTCCTTCAAACCAACAGGTTGCTGATGTTCTAA

mRNA sequence

ATGGGTGATGAATTTGAAATCAAGGATTTGGGAAATCTGAAATATTTCCTTAGAATGGAGGTGACTAGATCTAAAGAAGATATCTCCGTATCTCAGAGAAAATACACCCTTGATTTGCTAACCAGGACAGGTATGTTGGGATGTCTTCCTGCTGATACACCTACTAAATTCAATTGTAAACTAGGAAACTCTGATGATCAAGCTCCAGTTGATAAAGAACAATATCAGCGCCTTTTTATGCAGGCTCCAAATGAGAAACATATGGAAGTTGTTAACAGAATTTTGAGATACTTGAAAAATACACCTGGTAAAGGGTTGATGTTTAGAAAAACAAATAGAAAGACCATTGAAGCATATACTGACTCCGATTTGATAGGATTTGTTGTTGATAGAAAGTCTACCTCCGGTTATTGTACCTTTGTTTGGGGCAATCTTGTAACTTGGAGGAGTAAGAAGCAAAGTGTTGTGGCCAGGAGCAGTGTTGAGGCTGAATACAGAGCTATGAGTTTGGGAATATGTGAGGAAATTTGGCTCCAGAAAGTCTTGTCAGATCTTCATCAGGAATGTGAGACACCATTGAAGCTTTTTGTGATAATAAAGTTGCTATTAGTATTGCTAACAACCCAGTTCAACATGATAGAACTAAACATGTTGAGATTGATTGGCATTTCATCAAAGAAAGACTTGACAGTGGAAGCATATGCATTCCGTACATTCCTTCAAACCAACAGGTTGCTGATGTTCTAA

Coding sequence (CDS)

ATGGGTGATGAATTTGAAATCAAGGATTTGGGAAATCTGAAATATTTCCTTAGAATGGAGGTGACTAGATCTAAAGAAGATATCTCCGTATCTCAGAGAAAATACACCCTTGATTTGCTAACCAGGACAGGTATGTTGGGATGTCTTCCTGCTGATACACCTACTAAATTCAATTGTAAACTAGGAAACTCTGATGATCAAGCTCCAGTTGATAAAGAACAATATCAGCGCCTTTTTATGCAGGCTCCAAATGAGAAACATATGGAAGTTGTTAACAGAATTTTGAGATACTTGAAAAATACACCTGGTAAAGGGTTGATGTTTAGAAAAACAAATAGAAAGACCATTGAAGCATATACTGACTCCGATTTGATAGGATTTGTTGTTGATAGAAAGTCTACCTCCGGTTATTGTACCTTTGTTTGGGGCAATCTTGTAACTTGGAGGAGTAAGAAGCAAAGTGTTGTGGCCAGGAGCAGTGTTGAGGCTGAATACAGAGCTATGAGTTTGGGAATATGTGAGGAAATTTGGCTCCAGAAAGTCTTGTCAGATCTTCATCAGGAATGTGAGACACCATTGAAGCTTTTTGTGATAATAAAGTTGCTATTAGTATTGCTAACAACCCAGTTCAACATGATAGAACTAAACATGTTGAGATTGATTGGCATTTCATCAAAGAAAGACTTGACAGTGGAAGCATATGCATTCCGTACATTCCTTCAAACCAACAGGTTGCTGATGTTCTAA

Protein sequence

MGDEFEIKDLGNLKYFLRMEVTRSKEDISVSQRKYTLDLLTRTGMLGCLPADTPTKFNCKLGNSDDQAPVDKEQYQRLFMQAPNEKHMEVVNRILRYLKNTPGKGLMFRKTNRKTIEAYTDSDLIGFVVDRKSTSGYCTFVWGNLVTWRSKKQSVVARSSVEAEYRAMSLGICEEIWLQKVLSDLHQECETPLKLFVIIKLLLVLLTTQFNMIELNMLRLIGISSKKDLTVEAYAFRTFLQTNRLLMF
Homology
BLAST of Cmc04g0101331 vs. NCBI nr
Match: TYK23097.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 392.5 bits (1007), Expect = 2.7e-105
Identity = 206/270 (76.30%), Postives = 220/270 (81.48%), Query Frame = 0

Query: 1    MGDEFEIKDLGNLKYFLRMEVTRSKEDISVSQRKYTLDLLTRTGMLGCLPADTPTKFNCK 60
            +G+EFEI+DLGNLKYFL MEV RSKE ISVSQRKYTLDLLT TGMLGC  ADTP +FNCK
Sbjct: 1461 IGNEFEIEDLGNLKYFLGMEVARSKEGISVSQRKYTLDLLTETGMLGCCLADTPIEFNCK 1520

Query: 61   LGNSDDQAPVDKEQYQRL-----------------------FMQAPNEKHMEVVNRILRY 120
            LGNSDDQ PVDKEQYQRL                       FMQAP E+HME V RILRY
Sbjct: 1521 LGNSDDQVPVDKEQYQRLVGKLIYLSHTHPDISFAVSAVSQFMQAPYEEHMEAVKRILRY 1580

Query: 121  LKNTPGKGLMFRKTNRKTIEAYTDSDLIGFVVDRKSTSGYCTFVWGNLVTWRSKKQSVVA 180
            LK TPGKGLMFRKT++KTIEAYTDSD  G VVDRKSTSGYCTFVWGNLVTWRSKKQ+VV+
Sbjct: 1581 LKTTPGKGLMFRKTDKKTIEAYTDSDWAGSVVDRKSTSGYCTFVWGNLVTWRSKKQNVVS 1640

Query: 181  RSSVEAEYRAMSLGICEEIWLQKVLSDLHQECETPLKLFVIIKLLLVLLTTQFNMIELNM 240
            RSS EAEY+AMSLGICEEIWLQKVLSDLHQECETPLKLF   K  + +  TQF+MIELNM
Sbjct: 1641 RSSAEAEYKAMSLGICEEIWLQKVLSDLHQECETPLKLFCDNKAAISIANTQFSMIELNM 1700

Query: 241  LRLIGISSKKDLTVEAYAFRTFLQTNRLLM 248
            LRLIGISSKKDLTV AYAFRT L+ NRLLM
Sbjct: 1701 LRLIGISSKKDLTVGAYAFRTSLRANRLLM 1730

BLAST of Cmc04g0101331 vs. NCBI nr
Match: KAA0025138.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 392.1 bits (1006), Expect = 3.5e-105
Identity = 205/270 (75.93%), Postives = 220/270 (81.48%), Query Frame = 0

Query: 1    MGDEFEIKDLGNLKYFLRMEVTRSKEDISVSQRKYTLDLLTRTGMLGCLPADTPTKFNCK 60
            +G+EFEI+DLGNLKYFL MEV RSKE ISVSQRKYTLDLLT TGMLGC  ADTP +FNCK
Sbjct: 1444 IGNEFEIEDLGNLKYFLGMEVARSKEGISVSQRKYTLDLLTETGMLGCCLADTPIEFNCK 1503

Query: 61   LGNSDDQAPVDKEQYQRL-----------------------FMQAPNEKHMEVVNRILRY 120
            LGNSDDQ PVDKEQYQRL                       FMQAP E+HME V RILRY
Sbjct: 1504 LGNSDDQVPVDKEQYQRLVGKLIYLSHTHPDISFAVSAVSQFMQAPYEEHMEAVKRILRY 1563

Query: 121  LKNTPGKGLMFRKTNRKTIEAYTDSDLIGFVVDRKSTSGYCTFVWGNLVTWRSKKQSVVA 180
            LK TPGKGLMFRKT++KTIEAYTDSD  G +VDRKSTSGYCTFVWGNLVTWRSKKQ+VV+
Sbjct: 1564 LKTTPGKGLMFRKTDKKTIEAYTDSDWAGSIVDRKSTSGYCTFVWGNLVTWRSKKQNVVS 1623

Query: 181  RSSVEAEYRAMSLGICEEIWLQKVLSDLHQECETPLKLFVIIKLLLVLLTTQFNMIELNM 240
            RSS EAEY+AMSLGICEEIWLQKVLSDLHQECETPLKLF   K  + +  TQF+MIELNM
Sbjct: 1624 RSSAEAEYKAMSLGICEEIWLQKVLSDLHQECETPLKLFCDNKAAISIANTQFSMIELNM 1683

Query: 241  LRLIGISSKKDLTVEAYAFRTFLQTNRLLM 248
            LRLIGISSKKDLTV AYAFRT L+ NRLLM
Sbjct: 1684 LRLIGISSKKDLTVGAYAFRTSLRANRLLM 1713

BLAST of Cmc04g0101331 vs. NCBI nr
Match: KAA0048014.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 365.9 bits (938), Expect = 2.7e-97
Identity = 193/248 (77.82%), Postives = 210/248 (84.68%), Query Frame = 0

Query: 1   MGDEFEIKDLGNLKYFLRMEVTRSKEDISVSQRKYTLDLLTRTGMLGCLPADTPTKFNCK 60
           MG+EFEIKDLGNLKYFL MEV RSKE IS+SQRK+TLDL   TGML C PADTP +FN K
Sbjct: 509 MGNEFEIKDLGNLKYFLGMEVARSKEGISISQRKHTLDLQAETGMLVCRPADTPIEFNYK 568

Query: 61  LGNSDDQAPVDKEQYQRLFMQAPNEKHMEVVNRILRYLKNTPGKGLMFRKTNRKTIEAYT 120
           LGNSDDQ           FMQAP E+HME V RIL+YLK TPGK L+FRKT++KTI+AYT
Sbjct: 569 LGNSDDQ-----------FMQAPYEEHMEAVKRILKYLKTTPGKDLIFRKTDKKTIKAYT 628

Query: 121 DSDLIGFVVDRKSTSGYCTFVWGNLVTWRSKKQSVVARSSVEAEYRAMSLGICEEIWLQK 180
           DSD  G V+DRKSTSGYC FVWGNLVTWRSKKQS++ARSS EAEYRAMSLGICEEIWLQK
Sbjct: 629 DSDWAGSVIDRKSTSGYCIFVWGNLVTWRSKKQSIMARSSAEAEYRAMSLGICEEIWLQK 688

Query: 181 VLSDLHQECETPLKLFVIIK-LLLVLLTTQFNMIELNMLRLIGISSKKDLTVEAYAFRTF 240
           VLSDLHQ+CETPLKLF   K LLLVLLTTQF+MIELNMLRLI ISSKKDLTV AYAFRTF
Sbjct: 689 VLSDLHQKCETPLKLFCDNKVLLLVLLTTQFSMIELNMLRLIDISSKKDLTVGAYAFRTF 745

Query: 241 LQTNRLLM 248
           L+ +RLLM
Sbjct: 749 LRADRLLM 745

BLAST of Cmc04g0101331 vs. NCBI nr
Match: TYJ99952.1 (Beta-galactosidase [Cucumis melo var. makuwa] >TYK02395.1 Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 356.3 bits (913), Expect = 2.1e-94
Identity = 181/219 (82.65%), Postives = 183/219 (83.56%), Query Frame = 0

Query: 1    MGDEFEIKDLGNLKYFLRMEVTRSKEDISVSQRKYTLDLLTRTGMLGCLPADTPTKFNCK 60
            MGDEFEIKDLGNLKYFL MEV RSKE ISVSQRKYTLDLLT TGMLGC PADTP +FNCK
Sbjct: 1309 MGDEFEIKDLGNLKYFLGMEVARSKEGISVSQRKYTLDLLTETGMLGCRPADTPIEFNCK 1368

Query: 61   LGNSDDQAPVDKEQYQRL-----------------------FMQAPNEKHMEVVNRILRY 120
            LGNSDDQ PVDKEQYQRL                       FMQAP EKHME VNRILRY
Sbjct: 1369 LGNSDDQVPVDKEQYQRLVGKLIYLSHTRPDISFAVSVVSQFMQAPYEKHMEAVNRILRY 1428

Query: 121  LKNTPGKGLMFRKTNRKTIEAYTDSDLIGFVVDRKSTSGYCTFVWGNLVTWRSKKQSVVA 180
            LKNTPGKGLMFRKTNRKTIEAYTDSD  G V+DRKSTSGYCTFVWGNLVTWRSKKQSVVA
Sbjct: 1429 LKNTPGKGLMFRKTNRKTIEAYTDSDWAGSVIDRKSTSGYCTFVWGNLVTWRSKKQSVVA 1488

Query: 181  RSSVEAEYRAMSLGICEEIWLQKVLSDLHQECETPLKLF 197
            RSS EAEYRAMSLGICEEIWLQKVLSDLHQECETPLKLF
Sbjct: 1489 RSSAEAEYRAMSLGICEEIWLQKVLSDLHQECETPLKLF 1527

BLAST of Cmc04g0101331 vs. NCBI nr
Match: TYK08054.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 356.3 bits (913), Expect = 2.1e-94
Identity = 181/219 (82.65%), Postives = 183/219 (83.56%), Query Frame = 0

Query: 1    MGDEFEIKDLGNLKYFLRMEVTRSKEDISVSQRKYTLDLLTRTGMLGCLPADTPTKFNCK 60
            MGDEFEIKDLGNLKYFL MEV RSKE ISVSQRKYTLDLLT TGMLGC PADTP +FNCK
Sbjct: 1309 MGDEFEIKDLGNLKYFLGMEVARSKEGISVSQRKYTLDLLTETGMLGCRPADTPIEFNCK 1368

Query: 61   LGNSDDQAPVDKEQYQRL-----------------------FMQAPNEKHMEVVNRILRY 120
            LGNSDDQ PVDKEQYQRL                       FMQAP EKHME VNRILRY
Sbjct: 1369 LGNSDDQVPVDKEQYQRLVGKLIYLSHTRPDISFAVSVVSQFMQAPYEKHMEAVNRILRY 1428

Query: 121  LKNTPGKGLMFRKTNRKTIEAYTDSDLIGFVVDRKSTSGYCTFVWGNLVTWRSKKQSVVA 180
            LKNTPGKGLMFRKTNRKTIEAYTDSD  G V+DRKSTSGYCTFVWGNLVTWRSKKQSVVA
Sbjct: 1429 LKNTPGKGLMFRKTNRKTIEAYTDSDWAGSVIDRKSTSGYCTFVWGNLVTWRSKKQSVVA 1488

Query: 181  RSSVEAEYRAMSLGICEEIWLQKVLSDLHQECETPLKLF 197
            RSS EAEYRAMSLGICEEIWLQKVLSDLHQECETPLKLF
Sbjct: 1489 RSSAEAEYRAMSLGICEEIWLQKVLSDLHQECETPLKLF 1527

BLAST of Cmc04g0101331 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 4.0e-27
Identity = 71/208 (34.13%), Postives = 105/208 (50.48%), Query Frame = 0

Query: 1    MGDEFEIKDLGNLKYFLRMEVTRSKEDISVSQRKYTLDLLTRTGMLGCLPADTPTKFNCK 60
            +   F +KD   L YFL +E  R    + +SQR+Y LDLL RT M+   P  TP   + K
Sbjct: 1171 LSQRFSVKDHEELHYFLGIEAKRVPTGLHLSQRRYILDLLARTNMITAKPVTTPMAPSPK 1230

Query: 61   LGNSDDQAPVDKEQYQRL-----------------------FMQAPNEKHMEVVNRILRY 120
            L         D  +Y+ +                       FM  P E+H++ + RILRY
Sbjct: 1231 LSLYSGTKLTDPTEYRGIVGSLQYLAFTRPDISYAVNRLSQFMHMPTEEHLQALKRILRY 1290

Query: 121  LKNTPGKGLMFRKTNRKTIEAYTDSDLIGFVVDRKSTSGYCTFVWGNLVTWRSKKQSVVA 180
            L  TP  G+  +K N  ++ AY+D+D  G   D  ST+GY  ++  + ++W SKKQ  V 
Sbjct: 1291 LAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDDYVSTNGYIVYLGHHPISWSSKKQKGVV 1350

Query: 181  RSSVEAEYRAMSLGICEEIWLQKVLSDL 186
            RSS EAEYR+++    E  W+  +L++L
Sbjct: 1351 RSSTEAEYRSVANTSSEMQWICSLLTEL 1378

BLAST of Cmc04g0101331 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.5e-26
Identity = 70/215 (32.56%), Postives = 107/215 (49.77%), Query Frame = 0

Query: 1    MGDEFEIKDLGNLKYFLRMEVTRSKEDISVSQRKYTLDLLTRTGMLGCLPADTPTKFNCK 60
            +   F +K+  +L YFL +E  R  + + +SQR+YTLDLL RT ML   P  TP   + K
Sbjct: 1154 LSQRFSVKEHEDLHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPK 1213

Query: 61   LGNSDDQAPVDKEQYQRL-----------------------FMQAPNEKHMEVVNRILRY 120
            L         D  +Y+ +                       +M  P + H   + R+LRY
Sbjct: 1214 LTLHSGTKLPDPTEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRY 1273

Query: 121  LKNTPGKGLMFRKTNRKTIEAYTDSDLIGFVVDRKSTSGYCTFVWGNLVTWRSKKQSVVA 180
            L  TP  G+  +K N  ++ AY+D+D  G   D  ST+GY  ++  + ++W SKKQ  V 
Sbjct: 1274 LAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVV 1333

Query: 181  RSSVEAEYRAMSLGICEEIWLQKVLSDLHQECETP 193
            RSS EAEYR+++    E  W+  +L++L  +   P
Sbjct: 1334 RSSTEAEYRSVANTSSELQWICSLLTELGIQLSHP 1368

BLAST of Cmc04g0101331 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 3.7e-25
Identity = 67/199 (33.67%), Postives = 101/199 (50.75%), Query Frame = 0

Query: 1   MGDEFEIKDLGNLKYFLRMEVTRSKEDISVSQRKYTLDLLTRTGMLGCLPADT--PTKFN 60
           +   F +KDLG + YFL +++      + +SQ KY   +L   GML C P  T  P K N
Sbjct: 27  LSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLN 86

Query: 61  CKLGN------SDDQAPVDKEQYQRLF--------------MQAPNEKHMEVVNRILRYL 120
             +        SD ++ V   QY  L               M  P     +++ R+LRY+
Sbjct: 87  SSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYV 146

Query: 121 KNTPGKGLMFRKTNRKTIEAYTDSDLIGFVVDRKSTSGYCTFVWGNLVTWRSKKQSVVAR 178
           K T   GL   K ++  ++A+ DSD  G    R+ST+G+CTF+  N+++W +K+Q  V+R
Sbjct: 147 KGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSR 206

BLAST of Cmc04g0101331 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 102.4 bits (254), Expect = 7.3e-21
Identity = 67/220 (30.45%), Postives = 114/220 (51.82%), Query Frame = 0

Query: 3    DEFEIKDLGNLKYFLRMEVTRSKEDISVSQRKYTLDLLTRTGMLGCLPADT--PTKFNCK 62
            ++F + DL  +K+F+ + +   ++ I +SQ  Y   +L++  M  C    T  P+K N +
Sbjct: 1110 EKFRMTDLNEIKHFIGIRIEMQEDKIYLSQSAYVKKILSKFNMENCNAVSTPLPSKINYE 1169

Query: 63   LGNSDD------QAPVDKEQYQRL---------------FMQAPNEKHMEVVNRILRYLK 122
            L NSD+      ++ +    Y  L               +    N +  + + R+LRYLK
Sbjct: 1170 LLNSDEDCNTPCRSLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLK 1229

Query: 123  NTPGKGLMFRK--TNRKTIEAYTDSDLIGFVVDRKSTSGYCTFVWG-NLVTWRSKKQSVV 182
             T    L+F+K       I  Y DSD  G  +DRKST+GY   ++  NL+ W +K+Q+ V
Sbjct: 1230 GTIDMKLIFKKNLAFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSV 1289

Query: 183  ARSSVEAEYRAMSLGICEEIWLQKVLSDLHQECETPLKLF 197
            A SS EAEY A+   + E +WL+ +L+ ++ + E P+K++
Sbjct: 1290 AASSTEAEYMALFEAVREALWLKFLLTSINIKLENPIKIY 1329

BLAST of Cmc04g0101331 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.4e-18
Identity = 67/222 (30.18%), Postives = 106/222 (47.75%), Query Frame = 0

Query: 1    MGDEFEIKDLGNLKYFLRMEVTRSK--EDISVSQRKYTLDLLTRTGMLGCLPADTPTKFN 60
            +   F++KDLG  +  L M++ R +    + +SQ KY   +L R  M    P  TP   +
Sbjct: 1029 LSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLAGH 1088

Query: 61   CKLGNS------DDQAPVDKEQYQRL------------------------FMQAPNEKHM 120
             KL         +++  + K  Y                           F++ P ++H 
Sbjct: 1089 LKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHW 1148

Query: 121  EVVNRILRYLKNTPGKGLMFRKTNRKTIEAYTDSDLIGFVVDRKSTSGYCTFVWGNLVTW 180
            E V  ILRYL+ T G  L F  ++   ++ YTD+D+ G + +RKS++GY     G  ++W
Sbjct: 1149 EAVKWILRYLRGTTGDCLCFGGSD-PILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISW 1208

Query: 181  RSKKQSVVARSSVEAEYRAMSLGICEEIWLQKVLSD--LHQE 189
            +SK Q  VA S+ EAEY A +    E IWL++ L +  LHQ+
Sbjct: 1209 QSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQK 1249

BLAST of Cmc04g0101331 vs. ExPASy TrEMBL
Match: A0A5D3DHC0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G00790 PE=3 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 1.3e-105
Identity = 206/270 (76.30%), Postives = 220/270 (81.48%), Query Frame = 0

Query: 1    MGDEFEIKDLGNLKYFLRMEVTRSKEDISVSQRKYTLDLLTRTGMLGCLPADTPTKFNCK 60
            +G+EFEI+DLGNLKYFL MEV RSKE ISVSQRKYTLDLLT TGMLGC  ADTP +FNCK
Sbjct: 1461 IGNEFEIEDLGNLKYFLGMEVARSKEGISVSQRKYTLDLLTETGMLGCCLADTPIEFNCK 1520

Query: 61   LGNSDDQAPVDKEQYQRL-----------------------FMQAPNEKHMEVVNRILRY 120
            LGNSDDQ PVDKEQYQRL                       FMQAP E+HME V RILRY
Sbjct: 1521 LGNSDDQVPVDKEQYQRLVGKLIYLSHTHPDISFAVSAVSQFMQAPYEEHMEAVKRILRY 1580

Query: 121  LKNTPGKGLMFRKTNRKTIEAYTDSDLIGFVVDRKSTSGYCTFVWGNLVTWRSKKQSVVA 180
            LK TPGKGLMFRKT++KTIEAYTDSD  G VVDRKSTSGYCTFVWGNLVTWRSKKQ+VV+
Sbjct: 1581 LKTTPGKGLMFRKTDKKTIEAYTDSDWAGSVVDRKSTSGYCTFVWGNLVTWRSKKQNVVS 1640

Query: 181  RSSVEAEYRAMSLGICEEIWLQKVLSDLHQECETPLKLFVIIKLLLVLLTTQFNMIELNM 240
            RSS EAEY+AMSLGICEEIWLQKVLSDLHQECETPLKLF   K  + +  TQF+MIELNM
Sbjct: 1641 RSSAEAEYKAMSLGICEEIWLQKVLSDLHQECETPLKLFCDNKAAISIANTQFSMIELNM 1700

Query: 241  LRLIGISSKKDLTVEAYAFRTFLQTNRLLM 248
            LRLIGISSKKDLTV AYAFRT L+ NRLLM
Sbjct: 1701 LRLIGISSKKDLTVGAYAFRTSLRANRLLM 1730

BLAST of Cmc04g0101331 vs. ExPASy TrEMBL
Match: A0A5A7SG80 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold124G00380 PE=3 SV=1)

HSP 1 Score: 392.1 bits (1006), Expect = 1.7e-105
Identity = 205/270 (75.93%), Postives = 220/270 (81.48%), Query Frame = 0

Query: 1    MGDEFEIKDLGNLKYFLRMEVTRSKEDISVSQRKYTLDLLTRTGMLGCLPADTPTKFNCK 60
            +G+EFEI+DLGNLKYFL MEV RSKE ISVSQRKYTLDLLT TGMLGC  ADTP +FNCK
Sbjct: 1444 IGNEFEIEDLGNLKYFLGMEVARSKEGISVSQRKYTLDLLTETGMLGCCLADTPIEFNCK 1503

Query: 61   LGNSDDQAPVDKEQYQRL-----------------------FMQAPNEKHMEVVNRILRY 120
            LGNSDDQ PVDKEQYQRL                       FMQAP E+HME V RILRY
Sbjct: 1504 LGNSDDQVPVDKEQYQRLVGKLIYLSHTHPDISFAVSAVSQFMQAPYEEHMEAVKRILRY 1563

Query: 121  LKNTPGKGLMFRKTNRKTIEAYTDSDLIGFVVDRKSTSGYCTFVWGNLVTWRSKKQSVVA 180
            LK TPGKGLMFRKT++KTIEAYTDSD  G +VDRKSTSGYCTFVWGNLVTWRSKKQ+VV+
Sbjct: 1564 LKTTPGKGLMFRKTDKKTIEAYTDSDWAGSIVDRKSTSGYCTFVWGNLVTWRSKKQNVVS 1623

Query: 181  RSSVEAEYRAMSLGICEEIWLQKVLSDLHQECETPLKLFVIIKLLLVLLTTQFNMIELNM 240
            RSS EAEY+AMSLGICEEIWLQKVLSDLHQECETPLKLF   K  + +  TQF+MIELNM
Sbjct: 1624 RSSAEAEYKAMSLGICEEIWLQKVLSDLHQECETPLKLFCDNKAAISIANTQFSMIELNM 1683

Query: 241  LRLIGISSKKDLTVEAYAFRTFLQTNRLLM 248
            LRLIGISSKKDLTV AYAFRT L+ NRLLM
Sbjct: 1684 LRLIGISSKKDLTVGAYAFRTSLRANRLLM 1713

BLAST of Cmc04g0101331 vs. ExPASy TrEMBL
Match: A0A5A7TYB2 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold385G00820 PE=4 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 1.3e-97
Identity = 193/248 (77.82%), Postives = 210/248 (84.68%), Query Frame = 0

Query: 1   MGDEFEIKDLGNLKYFLRMEVTRSKEDISVSQRKYTLDLLTRTGMLGCLPADTPTKFNCK 60
           MG+EFEIKDLGNLKYFL MEV RSKE IS+SQRK+TLDL   TGML C PADTP +FN K
Sbjct: 509 MGNEFEIKDLGNLKYFLGMEVARSKEGISISQRKHTLDLQAETGMLVCRPADTPIEFNYK 568

Query: 61  LGNSDDQAPVDKEQYQRLFMQAPNEKHMEVVNRILRYLKNTPGKGLMFRKTNRKTIEAYT 120
           LGNSDDQ           FMQAP E+HME V RIL+YLK TPGK L+FRKT++KTI+AYT
Sbjct: 569 LGNSDDQ-----------FMQAPYEEHMEAVKRILKYLKTTPGKDLIFRKTDKKTIKAYT 628

Query: 121 DSDLIGFVVDRKSTSGYCTFVWGNLVTWRSKKQSVVARSSVEAEYRAMSLGICEEIWLQK 180
           DSD  G V+DRKSTSGYC FVWGNLVTWRSKKQS++ARSS EAEYRAMSLGICEEIWLQK
Sbjct: 629 DSDWAGSVIDRKSTSGYCIFVWGNLVTWRSKKQSIMARSSAEAEYRAMSLGICEEIWLQK 688

Query: 181 VLSDLHQECETPLKLFVIIK-LLLVLLTTQFNMIELNMLRLIGISSKKDLTVEAYAFRTF 240
           VLSDLHQ+CETPLKLF   K LLLVLLTTQF+MIELNMLRLI ISSKKDLTV AYAFRTF
Sbjct: 689 VLSDLHQKCETPLKLFCDNKVLLLVLLTTQFSMIELNMLRLIDISSKKDLTVGAYAFRTF 745

Query: 241 LQTNRLLM 248
           L+ +RLLM
Sbjct: 749 LRADRLLM 745

BLAST of Cmc04g0101331 vs. ExPASy TrEMBL
Match: A0A5D3BJK7 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G001020 PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 1.0e-94
Identity = 181/219 (82.65%), Postives = 183/219 (83.56%), Query Frame = 0

Query: 1    MGDEFEIKDLGNLKYFLRMEVTRSKEDISVSQRKYTLDLLTRTGMLGCLPADTPTKFNCK 60
            MGDEFEIKDLGNLKYFL MEV RSKE ISVSQRKYTLDLLT TGMLGC PADTP +FNCK
Sbjct: 1309 MGDEFEIKDLGNLKYFLGMEVARSKEGISVSQRKYTLDLLTETGMLGCRPADTPIEFNCK 1368

Query: 61   LGNSDDQAPVDKEQYQRL-----------------------FMQAPNEKHMEVVNRILRY 120
            LGNSDDQ PVDKEQYQRL                       FMQAP EKHME VNRILRY
Sbjct: 1369 LGNSDDQVPVDKEQYQRLVGKLIYLSHTRPDISFAVSVVSQFMQAPYEKHMEAVNRILRY 1428

Query: 121  LKNTPGKGLMFRKTNRKTIEAYTDSDLIGFVVDRKSTSGYCTFVWGNLVTWRSKKQSVVA 180
            LKNTPGKGLMFRKTNRKTIEAYTDSD  G V+DRKSTSGYCTFVWGNLVTWRSKKQSVVA
Sbjct: 1429 LKNTPGKGLMFRKTNRKTIEAYTDSDWAGSVIDRKSTSGYCTFVWGNLVTWRSKKQSVVA 1488

Query: 181  RSSVEAEYRAMSLGICEEIWLQKVLSDLHQECETPLKLF 197
            RSS EAEYRAMSLGICEEIWLQKVLSDLHQECETPLKLF
Sbjct: 1489 RSSAEAEYRAMSLGICEEIWLQKVLSDLHQECETPLKLF 1527

BLAST of Cmc04g0101331 vs. ExPASy TrEMBL
Match: A0A5D3C4T4 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00040 PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 1.0e-94
Identity = 181/219 (82.65%), Postives = 183/219 (83.56%), Query Frame = 0

Query: 1    MGDEFEIKDLGNLKYFLRMEVTRSKEDISVSQRKYTLDLLTRTGMLGCLPADTPTKFNCK 60
            MGDEFEIKDLGNLKYFL MEV RSKE ISVSQRKYTLDLLT TGMLGC PADTP +FNCK
Sbjct: 1309 MGDEFEIKDLGNLKYFLGMEVARSKEGISVSQRKYTLDLLTETGMLGCRPADTPIEFNCK 1368

Query: 61   LGNSDDQAPVDKEQYQRL-----------------------FMQAPNEKHMEVVNRILRY 120
            LGNSDDQ PVDKEQYQRL                       FMQAP EKHME VNRILRY
Sbjct: 1369 LGNSDDQVPVDKEQYQRLVGKLIYLSHTRPDISFAVSVVSQFMQAPYEKHMEAVNRILRY 1428

Query: 121  LKNTPGKGLMFRKTNRKTIEAYTDSDLIGFVVDRKSTSGYCTFVWGNLVTWRSKKQSVVA 180
            LKNTPGKGLMFRKTNRKTIEAYTDSD  G V+DRKSTSGYCTFVWGNLVTWRSKKQSVVA
Sbjct: 1429 LKNTPGKGLMFRKTNRKTIEAYTDSDWAGSVIDRKSTSGYCTFVWGNLVTWRSKKQSVVA 1488

Query: 181  RSSVEAEYRAMSLGICEEIWLQKVLSDLHQECETPLKLF 197
            RSS EAEYRAMSLGICEEIWLQKVLSDLHQECETPLKLF
Sbjct: 1489 RSSAEAEYRAMSLGICEEIWLQKVLSDLHQECETPLKLF 1527

BLAST of Cmc04g0101331 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 144.8 bits (364), Expect = 9.1e-35
Identity = 78/215 (36.28%), Postives = 114/215 (53.02%), Query Frame = 0

Query: 5   FEIKDLGNLKYFLRMEVTRSKEDISVSQRKYTLDLLTRTGMLGCLPADTPTKFNCKLGNS 64
           F+++DLG LKYFL +E+ RS   I++ QRKY LDLL  TG+LGC P+  P   +      
Sbjct: 308 FKLRDLGPLKYFLGLEIARSAAGINICQRKYALDLLDETGLLGCKPSSVPMDPSVTFSAH 367

Query: 65  DDQAPVDKEQYQRL-----------------------FMQAPNEKHMEVVNRILRYLKNT 124
                VD + Y+RL                       F +AP   H + V +IL Y+K T
Sbjct: 368 SGGDFVDAKAYRRLIGRLMYLQITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGT 427

Query: 125 PGKGLMFRKTNRKTIEAYTDSDLIGFVVDRKSTSGYCTFVWGNLVTWRSKKQSVVARSSV 184
            G+GL +       ++ ++D+        R+ST+GYC F+  +L++W+SKKQ VV++SS 
Sbjct: 428 VGQGLFYSSQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSA 487

Query: 185 EAEYRAMSLGICEEIWLQKVLSDLHQECETPLKLF 197
           EAEYRA+S    E +WL +   +L      P  LF
Sbjct: 488 EAEYRALSFATDEMMWLAQFFRELQLPLSKPTLLF 522

BLAST of Cmc04g0101331 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 116.7 bits (291), Expect = 2.7e-26
Identity = 67/199 (33.67%), Postives = 101/199 (50.75%), Query Frame = 0

Query: 1   MGDEFEIKDLGNLKYFLRMEVTRSKEDISVSQRKYTLDLLTRTGMLGCLPADT--PTKFN 60
           +   F +KDLG + YFL +++      + +SQ KY   +L   GML C P  T  P K N
Sbjct: 27  LSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQILNNAGMLDCKPMSTPLPLKLN 86

Query: 61  CKLGN------SDDQAPVDKEQYQRLF--------------MQAPNEKHMEVVNRILRYL 120
             +        SD ++ V   QY  L               M  P     +++ R+LRY+
Sbjct: 87  SSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYV 146

Query: 121 KNTPGKGLMFRKTNRKTIEAYTDSDLIGFVVDRKSTSGYCTFVWGNLVTWRSKKQSVVAR 178
           K T   GL   K ++  ++A+ DSD  G    R+ST+G+CTF+  N+++W +K+Q  V+R
Sbjct: 147 KGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSR 206

BLAST of Cmc04g0101331 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 46.6 bits (109), Expect = 3.4e-05
Identity = 21/63 (33.33%), Postives = 35/63 (55.56%), Query Frame = 0

Query: 79  FMQAPNEKHMEVVNRILRYLKNTPGKGLMFRKTNRKTIEAYTDSDLIGFVVDRKSTSGYC 138
           F  A     M+ V ++L Y+K T G+GL +  T+   ++A+ DSD       R+S +G+C
Sbjct: 20  FSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKAFADSDWASCPDTRRSVTGFC 79

Query: 139 TFV 142
           + V
Sbjct: 80  SLV 82

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK23097.12.7e-10576.30Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0025138.13.5e-10575.93Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
KAA0048014.12.7e-9777.82Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m... [more]
TYJ99952.12.1e-9482.65Beta-galactosidase [Cucumis melo var. makuwa] >TYK02395.1 Beta-galactosidase [Cu... [more]
TYK08054.12.1e-9482.65Beta-galactosidase [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Q94HW24.0e-2734.13Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O... [more]
Q9ZT941.5e-2632.56Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O... [more]
P925193.7e-2533.67Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ... [more]
P041467.3e-2130.45Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3[more]
P109783.4e-1830.18Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Match NameE-valueIdentityDescription
A0A5D3DHC01.3e-10576.30Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7SG801.7e-10575.93Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5A7TYB21.3e-9777.82Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var.... [more]
A0A5D3BJK71.0e-9482.65Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold155G0... [more]
A0A5D3C4T41.0e-9482.65Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00... [more]
Match NameE-valueIdentityDescription
AT4G23160.19.1e-3536.28cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [more]
ATMG00810.12.7e-2633.67DNA/RNA polymerases superfamily protein [more]
ATMG00240.13.4e-0533.33Gag-Pol-related retrotransposon family protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 74..142
NoneNo IPR availablePANTHERPTHR11439:SF308SUBFAMILY NOT NAMEDcoord: 74..142
NoneNo IPR availableCDDcd09272RNase_HI_RT_Ty1coord: 117..197
e-value: 4.27187E-36
score: 122.962

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cmc04g0101331.1Cmc04g0101331.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
biological_process GO:0032456 endocytic recycling
biological_process GO:0016310 phosphorylation
biological_process GO:0015031 protein transport
cellular_component GO:0005768 endosome
cellular_component GO:0005739 mitochondrion
molecular_function GO:0005525 GTP binding
molecular_function GO:0016301 kinase activity
molecular_function GO:0003676 nucleic acid binding