Cmc04g0101111 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0101111
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Reverse transcriptase
Location	CMiso1.1chr04: 17358610 .. 17359188 (+)
RNA-Seq Expression	Cmc04g0101111
Synteny	Cmc04g0101111

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTGATGTTTTTGATTGTCAACAGGTTAAACCAGTAAGACAGAGGCCAGGAGGATTTCTTAATCCTTTGCCAGTGCCAGAGTGGAAATGGGAGCATATTACTATGGATTTTCTATTTGGATTACCTCGTACATCCAGTGGACATGATGGTATATGGGTAATAGTAGACAGACTCACCAAGACGACACGATTTATACCGATTAAAATGACATCTACGTTAGACCAGCTAGCAAGATTATATGTTGATAAGATTGTGAGTCAGTATGGAGTACCAGTGTCCATAGTTTCAGATAGGGATCCGAGGTTTACTTCTAAATTTTGGCCTAGTTTACAGAAAGCAATGGGAACAGGGCTAAAGTTTAGTACATCATTTCATCCCCAAACAGATGGTCAGTCCGAGAGGACCATCCAAACTTTAGAGGACATGTTGAGAGCATGTGTCCTACAACTTAAAGGAAGTTGGGATATCCACTTGCCACTTATGGAGTTTGCTTATAATAATAACTATCAGTCTAGTATCGGTATGACACCATATGAAGCCTTATATGGGAGACCATGCAGAACTCCTGTGTGCTGA

mRNA sequence

ATGTGTGATGTTTTTGATTGTCAACAGGTTAAACCAGTAAGACAGAGGCCAGGAGGATTTCTTAATCCTTTGCCAGTGCCAGAGTGGAAATGGGAGCATATTACTATGGATTTTCTATTTGGATTACCTCGTACATCCAGTGGACATGATGGTATATGGGTAATAGTAGACAGACTCACCAAGACGACACGATTTATACCGATTAAAATGACATCTACGTTAGACCAGCTAGCAAGATTATATGTTGATAAGATTGTGAGTCAGTATGGAGTACCAGTGTCCATAGTTTCAGATAGGGATCCGAGGTTTACTTCTAAATTTTGGCCTAGTTTACAGAAAGCAATGGGAACAGGGCTAAAGTTTAGTACATCATTTCATCCCCAAACAGATGGTCAGTCCGAGAGGACCATCCAAACTTTAGAGGACATGTTGAGAGCATGTGTCCTACAACTTAAAGGAAGTTGGGATATCCACTTGCCACTTATGGAGTTTGCTTATAATAATAACTATCAGTCTAGTATCGGTATGACACCATATGAAGCCTTATATGGGAGACCATGCAGAACTCCTGTGTGCTGA

Coding sequence (CDS)

ATGTGTGATGTTTTTGATTGTCAACAGGTTAAACCAGTAAGACAGAGGCCAGGAGGATTTCTTAATCCTTTGCCAGTGCCAGAGTGGAAATGGGAGCATATTACTATGGATTTTCTATTTGGATTACCTCGTACATCCAGTGGACATGATGGTATATGGGTAATAGTAGACAGACTCACCAAGACGACACGATTTATACCGATTAAAATGACATCTACGTTAGACCAGCTAGCAAGATTATATGTTGATAAGATTGTGAGTCAGTATGGAGTACCAGTGTCCATAGTTTCAGATAGGGATCCGAGGTTTACTTCTAAATTTTGGCCTAGTTTACAGAAAGCAATGGGAACAGGGCTAAAGTTTAGTACATCATTTCATCCCCAAACAGATGGTCAGTCCGAGAGGACCATCCAAACTTTAGAGGACATGTTGAGAGCATGTGTCCTACAACTTAAAGGAAGTTGGGATATCCACTTGCCACTTATGGAGTTTGCTTATAATAATAACTATCAGTCTAGTATCGGTATGACACCATATGAAGCCTTATATGGGAGACCATGCAGAACTCCTGTGTGCTGA

Protein sequence

MCDVFDCQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFIPIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFHPQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALYGRPCRTPVC

Homology

[Close]

BLAST of Cmc04g0101111 vs. NCBI nr
Match: TYK05214.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 394.0 bits (1011), Expect = 7.2e-106
Identity = 184/186 (98.92%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 7   CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFI 66
           CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFI
Sbjct: 639 CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFI 698

Query: 67  PIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFH 126
           PIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFH
Sbjct: 699 PIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFH 758

Query: 127 PQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALYGRP 186
           PQTDGQSERTIQTLEDMLRACVLQLKGSWD HLPLMEFAYNNNYQSSIGM PYEALYGRP
Sbjct: 759 PQTDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRP 818

Query: 187 CRTPVC 193
           CRTPVC
Sbjct: 819 CRTPVC 824

[Close]

BLAST of Cmc04g0101111 vs. NCBI nr
Match: KAA0053246.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 394.0 bits (1011), Expect = 7.2e-106
Identity = 184/186 (98.92%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 7   CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFI 66
           CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFI
Sbjct: 244 CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFI 303

Query: 67  PIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFH 126
           PIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFH
Sbjct: 304 PIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFH 363

Query: 127 PQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALYGRP 186
           PQTDGQSERTIQTLEDMLRACVLQLKGSWD HLPLMEFAYNNNYQSSIGM PYEALYGRP
Sbjct: 364 PQTDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRP 423

Query: 187 CRTPVC 193
           CRTPVC
Sbjct: 424 CRTPVC 429

[Close]

BLAST of Cmc04g0101111 vs. NCBI nr
Match: KAA0050493.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 394.0 bits (1011), Expect = 7.2e-106
Identity = 184/186 (98.92%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 7   CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFI 66
           CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFI
Sbjct: 766 CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFI 825

Query: 67  PIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFH 126
           PIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFH
Sbjct: 826 PIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFH 885

Query: 127 PQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALYGRP 186
           PQTDGQSERTIQTLEDMLRACVLQLKGSWD HLPLMEFAYNNNYQSSIGM PYEALYGRP
Sbjct: 886 PQTDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRP 945

Query: 187 CRTPVC 193
           CRTPVC
Sbjct: 946 CRTPVC 951

[Close]

BLAST of Cmc04g0101111 vs. NCBI nr
Match: KAA0059912.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 394.0 bits (1011), Expect = 7.2e-106
Identity = 184/186 (98.92%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 7   CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFI 66
           CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFI
Sbjct: 434 CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFI 493

Query: 67  PIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFH 126
           PIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFH
Sbjct: 494 PIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFH 553

Query: 127 PQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALYGRP 186
           PQTDGQSERTIQTLEDMLRACVLQLKGSWD HLPLMEFAYNNNYQSSIGM PYEALYGRP
Sbjct: 554 PQTDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRP 613

Query: 187 CRTPVC 193
           CRTPVC
Sbjct: 614 CRTPVC 619

[Close]

BLAST of Cmc04g0101111 vs. NCBI nr
Match: KAA0061889.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 394.0 bits (1011), Expect = 7.2e-106
Identity = 184/186 (98.92%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 7    CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFI 66
            CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFI
Sbjct: 946  CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFI 1005

Query: 67   PIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFH 126
            PIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFH
Sbjct: 1006 PIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFH 1065

Query: 127  PQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALYGRP 186
            PQTDGQSERTIQTLEDMLRACVLQLKGSWD HLPLMEFAYNNNYQSSIGM PYEALYGRP
Sbjct: 1066 PQTDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRP 1125

Query: 187  CRTPVC 193
            CRTPVC
Sbjct: 1126 CRTPVC 1131

[Close]

BLAST of Cmc04g0101111 vs. ExPASy Swiss-Prot
Match: Q7LHG5 (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-I PE=1 SV=2)

HSP 1 Score: 150.2 bits (378), Expect = 2.4e-35
Identity = 80/184 (43.48%), Postives = 107/184 (58.15%), Query Frame = 0


Query: 7    CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFI 66
            CQ +K  R R  G L PLP+ E +W  I+MDF+ GLP TS+  + I V+VDR +K   FI
Sbjct: 1171 CQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFI 1230

Query: 67   PIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFH 126
              + T    QL  L    I S +G P +I SDRD R T+  +  L K +G     S++ H
Sbjct: 1231 ATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANH 1290

Query: 127  PQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALYGRP 186
            PQTDGQSERTIQTL  +LRA V     +W ++LP +EF YN+    ++G +P+E   G  
Sbjct: 1291 PQTDGQSERTIQTLNRLLRAYVSTNIQNWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYL 1350

Query: 187  CRTP 191
              TP
Sbjct: 1351 PNTP 1354

[Close]

BLAST of Cmc04g0101111 vs. ExPASy Swiss-Prot
Match: Q99315 (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 148.7 bits (374), Expect = 6.9e-35
Identity = 79/184 (42.93%), Postives = 106/184 (57.61%), Query Frame = 0


Query: 7    CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFI 66
            CQ +K  R R  G L PLP+ E +W  I+MDF+ GLP TS+  + I V+VDR +K   FI
Sbjct: 1145 CQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSKRAHFI 1204

Query: 67   PIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFH 126
              + T    QL  L    I S +G P +I SDRD R T+  +  L K +G     S++ H
Sbjct: 1205 ATRKTLDATQLIDLLFRYIFSYHGFPRTITSDRDVRMTADKYQELTKRLGIKSTMSSANH 1264

Query: 127  PQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALYGRP 186
            PQTDGQSERTIQTL  +LRA       +W ++LP +EF YN+    ++G +P+E   G  
Sbjct: 1265 PQTDGQSERTIQTLNRLLRAYASTNIQNWHVYLPQIEFVYNSTPTRTLGKSPFEIDLGYL 1324

Query: 187  CRTP 191
              TP
Sbjct: 1325 PNTP 1328

[Close]

BLAST of Cmc04g0101111 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 4.2e-32
Identity = 66/177 (37.29%), Postives = 104/177 (58.76%), Query Frame = 0


Query: 7    CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFI 66
            CQ  K    +P G L P+P  E  WE ++MDF+  LP  SSG++ ++V+VDR +K    +
Sbjct: 960  CQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPE-SSGYNALFVVVDRFSKMAILV 1019

Query: 67   PIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFH 126
            P   + T +Q AR++  ++++ +G P  I++D D  FTS+ W          +KFS  + 
Sbjct: 1020 PCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYR 1079

Query: 127  PQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALY 184
            PQTDGQ+ERT QT+E +LR        +W  H+ L++ +YNN   S+  MTP+E ++
Sbjct: 1080 PQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of Cmc04g0101111 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 4.2e-32
Identity = 66/177 (37.29%), Postives = 104/177 (58.76%), Query Frame = 0


Query: 7    CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFI 66
            CQ  K    +P G L P+P  E  WE ++MDF+  LP  SSG++ ++V+VDR +K    +
Sbjct: 960  CQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPE-SSGYNALFVVVDRFSKMAILV 1019

Query: 67   PIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFH 126
            P   + T +Q AR++  ++++ +G P  I++D D  FTS+ W          +KFS  + 
Sbjct: 1020 PCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYR 1079

Query: 127  PQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALY 184
            PQTDGQ+ERT QT+E +LR        +W  H+ L++ +YNN   S+  MTP+E ++
Sbjct: 1080 PQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of Cmc04g0101111 vs. ExPASy Swiss-Prot
Match: P0CT34 (Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-1 PE=3 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 4.2e-32
Identity = 66/177 (37.29%), Postives = 104/177 (58.76%), Query Frame = 0


Query: 7    CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFI 66
            CQ  K    +P G L P+P  E  WE ++MDF+  LP  SSG++ ++V+VDR +K    +
Sbjct: 960  CQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPE-SSGYNALFVVVDRFSKMAILV 1019

Query: 67   PIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFH 126
            P   + T +Q AR++  ++++ +G P  I++D D  FTS+ W          +KFS  + 
Sbjct: 1020 PCTKSITAEQTARMFDQRVIAYFGNPKEIIADNDHIFTSQTWKDFAHKYNFVMKFSLPYR 1079

Query: 127  PQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALY 184
            PQTDGQ+ERT QT+E +LR        +W  H+ L++ +YNN   S+  MTP+E ++
Sbjct: 1080 PQTDGQTERTNQTVEKLLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVH 1135

[Close]

BLAST of Cmc04g0101111 vs. ExPASy TrEMBL
Match: A0A5A7U2V7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00630 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 3.5e-106
Identity = 184/186 (98.92%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 7    CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFI 66
            CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFI
Sbjct: 1174 CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFI 1233

Query: 67   PIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFH 126
            PIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFH
Sbjct: 1234 PIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFH 1293

Query: 127  PQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALYGRP 186
            PQTDGQSERTIQTLEDMLRACVLQLKGSWD HLPLMEFAYNNNYQSSIGM PYEALYGRP
Sbjct: 1294 PQTDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRP 1353

Query: 187  CRTPVC 193
            CRTPVC
Sbjct: 1354 CRTPVC 1359

[Close]

BLAST of Cmc04g0101111 vs. ExPASy TrEMBL
Match: A0A5D3BS67 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00050 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 3.5e-106
Identity = 184/186 (98.92%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 7    CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFI 66
            CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFI
Sbjct: 1212 CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFI 1271

Query: 67   PIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFH 126
            PIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFH
Sbjct: 1272 PIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFH 1331

Query: 127  PQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALYGRP 186
            PQTDGQSERTIQTLEDMLRACVLQLKGSWD HLPLMEFAYNNNYQSSIGM PYEALYGRP
Sbjct: 1332 PQTDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRP 1391

Query: 187  CRTPVC 193
            CRTPVC
Sbjct: 1392 CRTPVC 1397

[Close]

BLAST of Cmc04g0101111 vs. ExPASy TrEMBL
Match: A0A5D3BHI1 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold115G00450 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 3.5e-106
Identity = 184/186 (98.92%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 7    CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFI 66
            CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFI
Sbjct: 1212 CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFI 1271

Query: 67   PIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFH 126
            PIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFH
Sbjct: 1272 PIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFH 1331

Query: 127  PQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALYGRP 186
            PQTDGQSERTIQTLEDMLRACVLQLKGSWD HLPLMEFAYNNNYQSSIGM PYEALYGRP
Sbjct: 1332 PQTDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRP 1391

Query: 187  CRTPVC 193
            CRTPVC
Sbjct: 1392 CRTPVC 1397

[Close]

BLAST of Cmc04g0101111 vs. ExPASy TrEMBL
Match: A0A5A7T1Y5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold436G00980 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 3.5e-106
Identity = 184/186 (98.92%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 7    CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFI 66
            CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFI
Sbjct: 1212 CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFI 1271

Query: 67   PIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFH 126
            PIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFH
Sbjct: 1272 PIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFH 1331

Query: 127  PQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALYGRP 186
            PQTDGQSERTIQTLEDMLRACVLQLKGSWD HLPLMEFAYNNNYQSSIGM PYEALYGRP
Sbjct: 1332 PQTDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRP 1391

Query: 187  CRTPVC 193
            CRTPVC
Sbjct: 1392 CRTPVC 1397

[Close]

BLAST of Cmc04g0101111 vs. ExPASy TrEMBL
Match: A0A5A7UUL6 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold132G00090 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 3.5e-106
Identity = 184/186 (98.92%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 7    CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFI 66
            CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFI
Sbjct: 844  CQQVKPVRQRPGGFLNPLPVPEWKWEHITMDFLFGLPRTSSGHDGIWVIVDRLTKTTRFI 903

Query: 67   PIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFH 126
            PIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFH
Sbjct: 904  PIKMTSTLDQLARLYVDKIVSQYGVPVSIVSDRDPRFTSKFWPSLQKAMGTGLKFSTSFH 963

Query: 127  PQTDGQSERTIQTLEDMLRACVLQLKGSWDIHLPLMEFAYNNNYQSSIGMTPYEALYGRP 186
            PQTDGQSERTIQTLEDMLRACVLQLKGSWD HLPLMEFAYNNNYQSSIGM PYEALYGRP
Sbjct: 964  PQTDGQSERTIQTLEDMLRACVLQLKGSWDTHLPLMEFAYNNNYQSSIGMAPYEALYGRP 1023

Query: 187  CRTPVC 193
            CRTPVC
Sbjct: 1024 CRTPVC 1029

The following BLAST results are available for this feature:

BLAST of Cmc04g0101111 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK05214.1	7.2e-106	98.92	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0053246.1	7.2e-106	98.92	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0050493.1	7.2e-106	98.92	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]
KAA0059912.1	7.2e-106	98.92	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0061889.1	7.2e-106	98.92	DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0101111 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7LHG5	2.4e-35	43.48	Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q99315	6.9e-35	42.93	Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
Q9UR07	4.2e-32	37.29	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	4.2e-32	37.29	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT34	4.2e-32	37.29	Transposon Tf2-1 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248...	[more]

BLAST of Cmc04g0101111 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U2V7	3.5e-106	98.92	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37...	[more]
A0A5D3BS67	3.5e-106	98.92	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold50...	[more]
A0A5D3BHI1	3.5e-106	98.92	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11...	[more]
A0A5A7T1Y5	3.5e-106	98.92	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold43...	[more]
A0A5A7UUL6	3.5e-106	98.92	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]

BLAST of Cmc04g0101111 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036397	Ribonuclease H superfamily	GENE3D	3.30.420.10		coord: 21..192 e-value: 9.7E-48 score: 164.1
None	No IPR available	PANTHER	PTHR45835	YALI0A06105P	coord: 7..179
IPR001584	Integrase, catalytic core	PROSITE	PS50994	INTEGRASE	coord: 21..186 score: 19.528761
IPR012337	Ribonuclease H-like superfamily	SUPERFAMILY	53098	Ribonuclease H-like	coord: 22..180

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0101111.1	Cmc04g0101111.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding