Cmc04g0100701 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0100701
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Gag/pol protein
Location	CMiso1.1chr04: 16783360 .. 16783998 (+)
RNA-Seq Expression	Cmc04g0100701
Synteny	Cmc04g0100701

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAATGTTATGTACTAGACTTGACATTTTGCTATTCAATAGGGATAGTTAGTAGATATCAGTCCAATCCTGGACGTGATCATTGGACAGCCGTTAAGAATATTCTAAAATACCTTAGAAAAACAAAAGACTACATGCTTGTGTATGGTTCTAAGGATCTGATCCTTATTGGATACACTGACTCCGATTTTCAAACTGATAAAGATGCTACAAAGTCTACATCAGGATCAGTTTTCACTCTGAATGGAGGAGCAGTAGTATGGAGAAGCATAAAACAATCCTGTGTTGCCGACTCCACTATGGAAGCTGAATATGTAGCTGCCTGCAAAGCAGGAAAGGAAGCAGTATGGCTTAAAAAGTTCTTAATAGATTTGGAAGTTGTTCCAAATATGCATCTGCCAATCACCTTATACTGTGACAACAGTGGTGTAGTTGCAAATTCACGAGAACCTAAAAGTCATAAACGAGAAAAATACATTGAACGAAAGTACCATCTTATCAGGGAAATTGTACATCGAGGAGACGTTACAGTAACAAAAATCTCCTCCGAGCAAAACATGGCTGATCCATTTACAAAAGCTCTCACGGCTAAAGTGTTTGAGAGCCACCTACATGGTTTAAGTTTACGTGGTTTGTAA

mRNA sequence

ATGCAATGTTATGTACTAGACTTGACATTTTGCTATTCAATAGGGATAGTTAGTAGATATCAGTCCAATCCTGGACGTGATCATTGGACAGCCGTTAAGAATATTCTAAAATACCTTAGAAAAACAAAAGACTACATGCTTGTGTATGGTTCTAAGGATCTGATCCTTATTGGATACACTGACTCCGATTTTCAAACTGATAAAGATGCTACAAAGTCTACATCAGGATCAGTTTTCACTCTGAATGGAGGAGCAGTAGTATGGAGAAGCATAAAACAATCCTGTGTTGCCGACTCCACTATGGAAGCTGAATATGTAGCTGCCTGCAAAGCAGGAAAGGAAGCAGTATGGCTTAAAAAGTTCTTAATAGATTTGGAAGTTGTTCCAAATATGCATCTGCCAATCACCTTATACTGTGACAACAGTGGTGTAGTTGCAAATTCACGAGAACCTAAAAGTCATAAACGAGAAAAATACATTGAACGAAAGTACCATCTTATCAGGGAAATTGTACATCGAGGAGACGTTACAGTAACAAAAATCTCCTCCGAGCAAAACATGGCTGATCCATTTACAAAAGCTCTCACGGCTAAAGTGTTTGAGAGCCACCTACATGGTTTAAGTTTACGTGGTTTGTAA

Coding sequence (CDS)

ATGCAATGTTATGTACTAGACTTGACATTTTGCTATTCAATAGGGATAGTTAGTAGATATCAGTCCAATCCTGGACGTGATCATTGGACAGCCGTTAAGAATATTCTAAAATACCTTAGAAAAACAAAAGACTACATGCTTGTGTATGGTTCTAAGGATCTGATCCTTATTGGATACACTGACTCCGATTTTCAAACTGATAAAGATGCTACAAAGTCTACATCAGGATCAGTTTTCACTCTGAATGGAGGAGCAGTAGTATGGAGAAGCATAAAACAATCCTGTGTTGCCGACTCCACTATGGAAGCTGAATATGTAGCTGCCTGCAAAGCAGGAAAGGAAGCAGTATGGCTTAAAAAGTTCTTAATAGATTTGGAAGTTGTTCCAAATATGCATCTGCCAATCACCTTATACTGTGACAACAGTGGTGTAGTTGCAAATTCACGAGAACCTAAAAGTCATAAACGAGAAAAATACATTGAACGAAAGTACCATCTTATCAGGGAAATTGTACATCGAGGAGACGTTACAGTAACAAAAATCTCCTCCGAGCAAAACATGGCTGATCCATTTACAAAAGCTCTCACGGCTAAAGTGTTTGAGAGCCACCTACATGGTTTAAGTTTACGTGGTTTGTAA

Protein sequence

MQCYVLDLTFCYSIGIVSRYQSNPGRDHWTAVKNILKYLRKTKDYMLVYGSKDLILIGYTDSDFQTDKDATKSTSGSVFTLNGGAVVWRSIKQSCVADSTMEAEYVAACKAGKEAVWLKKFLIDLEVVPNMHLPITLYCDNSGVVANSREPKSHKREKYIERKYHLIREIVHRGDVTVTKISSEQNMADPFTKALTAKVFESHLHGLSLRGL

Homology

[Close]

BLAST of Cmc04g0100701 vs. NCBI nr
Match: KAA0051362.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 374.4 bits (960), Expect = 6.5e-100
Identity = 182/212 (85.85%), Postives = 193/212 (91.04%), Query Frame = 0


Query: 1   MQCYVLDLTFCYSIGIVSRYQSNPGRDHWTAVKNILKYLRKTKDYMLVYGSKDLILIGYT 60
           M C + D+  CYS+GIVSRYQSNP RDHWTA+KNILKYLR+TKDYMLVYGSKDLIL GYT
Sbjct: 17  MLCIIPDI--CYSVGIVSRYQSNPVRDHWTAIKNILKYLRRTKDYMLVYGSKDLILTGYT 76

Query: 61  DSDFQTDKDATKSTSGSVFTLNGGAVVWRSIKQSCVADSTMEAEYVAACKAGKEAVWLKK 120
           DSDFQTDKD  KSTSGSVFTLNGGA+VWRSI+QSC+ DS MEAEYVA C+A KEAVWLKK
Sbjct: 77  DSDFQTDKDDRKSTSGSVFTLNGGAIVWRSIEQSCIVDSIMEAEYVATCEAAKEAVWLKK 136

Query: 121 FLIDLEVVPNMHLPITLYCDNSGVVANSREPKSHKREKYIERKYHLIREIVHRGDVTVTK 180
           FL DLEVVPNMHLPITLYCDNSG VANSREP+SHKREK IERKYHLIR+IVHRGDVTVTK
Sbjct: 137 FLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKREKNIERKYHLIRKIVHRGDVTVTK 196

Query: 181 ISSEQNMADPFTKALTAKVFESHLHGLSLRGL 213
           ISSEQNM DPFTKAL AKVFESHLHGL LRGL
Sbjct: 197 ISSEQNMTDPFTKALMAKVFESHLHGLGLRGL 226

[Close]

BLAST of Cmc04g0100701 vs. NCBI nr
Match: TYK14976.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 366.7 bits (940), Expect = 1.4e-97
Identity = 177/202 (87.62%), Postives = 188/202 (93.07%), Query Frame = 0


Query: 11  CYSIGIVSRYQSNPGRDHWTAVKNILKYLRKTKDYMLVYGSKDLILIGYTDSDFQTDKDA 70
           CYS+G+VSRYQSNPGRDHWTAVKNILKYLR+ KDYMLVYGSKDLIL GYTDSDFQTDKDA
Sbjct: 44  CYSVGMVSRYQSNPGRDHWTAVKNILKYLRRIKDYMLVYGSKDLILTGYTDSDFQTDKDA 103

Query: 71  TKSTSGSVFTLNGGAVVWRSIKQSCVADSTMEAEYVAACKAGKEAVWLKKFLIDLEVVPN 130
            KSTSGSVFTLN GAVVWRSIKQS + DSTMEAEYVAACKA KEAVWLKKFL  LEVV N
Sbjct: 104 RKSTSGSVFTLNEGAVVWRSIKQSYIVDSTMEAEYVAACKAAKEAVWLKKFLTYLEVVLN 163

Query: 131 MHLPITLYCDNSGVVANSREPKSHKREKYIERKYHLIREIVHRGDVTVTKISSEQNMADP 190
           MH+PIT+YCDNSG +ANSREP+SHKR K+IER+YHLIREI+HRGDVTVTKISSEQNM DP
Sbjct: 164 MHMPITIYCDNSGAIANSREPRSHKRGKHIERRYHLIREIIHRGDVTVTKISSEQNMVDP 223

Query: 191 FTKALTAKVFESHLHGLSLRGL 213
           FTKALTAKVFESHLHGL LRGL
Sbjct: 224 FTKALTAKVFESHLHGLGLRGL 245

[Close]

BLAST of Cmc04g0100701 vs. NCBI nr
Match: KAA0054281.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 366.7 bits (940), Expect = 1.4e-97
Identity = 177/202 (87.62%), Postives = 188/202 (93.07%), Query Frame = 0


Query: 11  CYSIGIVSRYQSNPGRDHWTAVKNILKYLRKTKDYMLVYGSKDLILIGYTDSDFQTDKDA 70
           CYS+G+VSRYQSNPGRDHWTAVKNILKYLR+ KDYMLVYGSKDLIL GYTDSDFQTDKDA
Sbjct: 436 CYSVGMVSRYQSNPGRDHWTAVKNILKYLRRIKDYMLVYGSKDLILTGYTDSDFQTDKDA 495

Query: 71  TKSTSGSVFTLNGGAVVWRSIKQSCVADSTMEAEYVAACKAGKEAVWLKKFLIDLEVVPN 130
            KSTSGSVFTLN GAVVWRSIKQS + DSTMEAEYVAACKA KEAVWLKKFL  LEVV N
Sbjct: 496 RKSTSGSVFTLNEGAVVWRSIKQSYIVDSTMEAEYVAACKAAKEAVWLKKFLTYLEVVLN 555

Query: 131 MHLPITLYCDNSGVVANSREPKSHKREKYIERKYHLIREIVHRGDVTVTKISSEQNMADP 190
           MH+PIT+YCDNSG +ANSREP+SHKR K+IER+YHLIREI+HRGDVTVTKISSEQNM DP
Sbjct: 556 MHMPITIYCDNSGAIANSREPRSHKRGKHIERRYHLIREIIHRGDVTVTKISSEQNMVDP 615

Query: 191 FTKALTAKVFESHLHGLSLRGL 213
           FTKALTAKVFESHLHGL LRGL
Sbjct: 616 FTKALTAKVFESHLHGLGLRGL 637

[Close]

BLAST of Cmc04g0100701 vs. NCBI nr
Match: KAA0063026.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 366.3 bits (939), Expect = 1.8e-97
Identity = 177/199 (88.94%), Postives = 187/199 (93.97%), Query Frame = 0


Query: 11  CYSIGIVSRYQSNPGRDHWTAVKNILKYLRKTKDYMLVYGSKDLILIGYTDSDFQTDKDA 70
           CYSIGI+SRYQSNPGRDHWT VKNILKYLR+TKDYMLVYGSKDLIL GYTDSDFQTDKD 
Sbjct: 595 CYSIGIISRYQSNPGRDHWTTVKNILKYLRRTKDYMLVYGSKDLILTGYTDSDFQTDKDG 654

Query: 71  TKSTSGSVFTLNGGAVVWRSIKQSCVADSTMEAEYVAACKAGKEAVWLKKFLIDLEVVPN 130
            KSTSGSVFTLNGG VVWRSIKQSC+A+STMEAEYVAAC+A KEAVWLKKFLIDLEVVPN
Sbjct: 655 RKSTSGSVFTLNGGGVVWRSIKQSCIAESTMEAEYVAACEAAKEAVWLKKFLIDLEVVPN 714

Query: 131 MHLPITLYCDNSGVVANSREPKSHKREKYIERKYHLIREIVHRGDVTVTKISSEQNMADP 190
           MHL ITLYCDNS VV NSREP SHKR K+IE+KYH+IR+IVHRGDVTVTKISSEQNMADP
Sbjct: 715 MHLSITLYCDNSDVVTNSREPLSHKRGKHIEQKYHMIRKIVHRGDVTVTKISSEQNMADP 774

Query: 191 FTKALTAKVFESHLHGLSL 210
           FTKALTAKVFES+LHGL L
Sbjct: 775 FTKALTAKVFESYLHGLGL 793

[Close]

BLAST of Cmc04g0100701 vs. NCBI nr
Match: KAA0032291.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK13513.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 364.0 bits (933), Expect = 8.8e-97
Identity = 178/202 (88.12%), Postives = 186/202 (92.08%), Query Frame = 0


Query: 11  CYSIGIVSRYQSNPGRDHWTAVKNILKYLRKTKDYMLVYGSKDLILIGYTDSDFQTDKDA 70
           CYS+GIVSRYQSNPGRDHW AVKNILKYLRKTKDYMLVYGSKDLIL G+TDSDFQ DKDA
Sbjct: 290 CYSVGIVSRYQSNPGRDHWIAVKNILKYLRKTKDYMLVYGSKDLILTGHTDSDFQIDKDA 349

Query: 71  TKSTSGSVFTLNGGAVVWRSIKQSCVADSTMEAEYVAACKAGKEAVWLKKFLIDLEVVPN 130
            KSTSGSVFTLNGGAVVWRSIKQSC+  STMEAEYVAAC+A KEAVWLKKFL DLEVVPN
Sbjct: 350 RKSTSGSVFTLNGGAVVWRSIKQSCIVGSTMEAEYVAACEAAKEAVWLKKFLTDLEVVPN 409

Query: 131 MHLPITLYCDNSGVVANSREPKSHKREKYIERKYHLIREIVHRGDVTVTKISSEQNMADP 190
           MHL ITLYCDNSG VANSREP+SHKR K+IERKYHLIREI+H+GDV VTKISSEQNMADP
Sbjct: 410 MHLSITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREILHQGDVIVTKISSEQNMADP 469

Query: 191 FTKALTAKVFESHLHGLSLRGL 213
           FTKAL AKVFESHLH L L GL
Sbjct: 470 FTKALMAKVFESHLHDLGLCGL 491

[Close]

BLAST of Cmc04g0100701 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 4.2e-41
Identity = 86/190 (45.26%), Postives = 122/190 (64.21%), Query Frame = 0


Query: 12   YSIGIVSRYQSNPGRDHWTAVKNILKYLRKTKDYMLVYGSKDLILIGYTDSDFQTDKDAT 71
            +++G+VSR+  NPG++HW AVK IL+YLR T    L +G  D IL GYTD+D   D D  
Sbjct: 1131 HAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLCFGGSDPILKGYTDADMAGDIDNR 1190

Query: 72   KSTSGSVFTLNGGAVVWRSIKQSCVADSTMEAEYVAACKAGKEAVWLKKFLIDLEVVPNM 131
            KS++G +FT +GGA+ W+S  Q CVA ST EAEY+AA + GKE +WLK+FL +L +    
Sbjct: 1191 KSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIAATETGKEMIWLKRFLQELGLHQKE 1250

Query: 132  HLPITLYCDNSGVVANSREPKSHKREKYIERKYHLIREIVHRGDVTVTKISSEQNMADPF 191
            ++   +YCD+   +  S+    H R K+I+ +YH IRE+V    + V KIS+ +N AD  
Sbjct: 1251 YV---VYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADML 1310

Query: 192  TKALTAKVFE 202
            TK +    FE
Sbjct: 1311 TKVVPRNKFE 1317

[Close]

BLAST of Cmc04g0100701 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 125.2 bits (313), Expect = 9.0e-28
Identity = 76/205 (37.07%), Postives = 116/205 (56.59%), Query Frame = 0


Query: 1    MQCYVLDLTFCYSIGIVSRYQSNPGRDHWTAVKNILKYLRKTKDYMLVYGSKDLI----L 60
            M C   DLT   ++ I+SRY S    + W  +K +L+YL+ T D  L++  K+L     +
Sbjct: 1192 MLCTRPDLT--TAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIF-KKNLAFENKI 1251

Query: 61   IGYTDSDFQTDKDATKSTSGSVFTL-NGGAVVWRSIKQSCVADSTMEAEYVAACKAGKEA 120
            IGY DSD+   +   KST+G +F + +   + W + +Q+ VA S+ EAEY+A  +A +EA
Sbjct: 1252 IGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREA 1311

Query: 121  VWLKKFLIDLEVVPNMHLPITLYCDNSGVVANSREPKSHKREKYIERKYHLIREIVHRGD 180
            +WLK  L  + +   +  PI +Y DN G ++ +  P  HKR K+I+ KYH  RE V    
Sbjct: 1312 LWLKFLLTSINI--KLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNV 1371

Query: 181  VTVTKISSEQNMADPFTKALTAKVF 201
            + +  I +E  +AD FTK L A  F
Sbjct: 1372 ICLEYIPTENQLADIFTKPLPAARF 1391

[Close]

BLAST of Cmc04g0100701 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.7e-24
Identity = 64/192 (33.33%), Postives = 95/192 (49.48%), Query Frame = 0


Query: 12   YSIGIVSRYQSNPGRDHWTAVKNILKYLRKTKDY-MLVYGSKDLILIGYTDSDFQTDKDA 71
            Y++  +S+Y   P  DHW A+K +L+YL  T D+ + +     L L  Y+D+D+  D D 
Sbjct: 1247 YAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKKGNTLSLHAYSDADWAGDTDD 1306

Query: 72   TKSTSGSVFTLNGGAVVWRSIKQSCVADSTMEAEYVAACKAGKEAVWLKKFLIDLEVVPN 131
              ST+G +  L    + W S KQ  V  S+ EAEY +      E  W+   L +L +   
Sbjct: 1307 YVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSELQWICSLLTELGI--Q 1366

Query: 132  MHLPITLYCDNSGVVANSREPKSHKREKYIERKYHLIREIVHRGDVTVTKISSEQNMADP 191
            +  P  +YCDN G       P  H R K+I   YH IR  V  G + V  +S+   +AD 
Sbjct: 1367 LSHPPVIYCDNVGATYLCANPVFHSRMKHIALDYHFIRNQVQSGALRVVHVSTHDQLADT 1426

Query: 192  FTKALTAKVFES 203
             TK L+   F++
Sbjct: 1427 LTKPLSRVAFQN 1436

[Close]

BLAST of Cmc04g0100701 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.3e-22
Identity = 62/192 (32.29%), Postives = 95/192 (49.48%), Query Frame = 0


Query: 12   YSIGIVSRYQSNPGRDHWTAVKNILKYLRKTKDY-MLVYGSKDLILIGYTDSDFQTDKDA 71
            Y++  +S++   P  +H  A+K IL+YL  T ++ + +     L L  Y+D+D+  DKD 
Sbjct: 1264 YAVNRLSQFMHMPTEEHLQALKRILRYLAGTPNHGIFLKKGNTLSLHAYSDADWAGDKDD 1323

Query: 72   TKSTSGSVFTLNGGAVVWRSIKQSCVADSTMEAEYVAACKAGKEAVWLKKFLIDLEVVPN 131
              ST+G +  L    + W S KQ  V  S+ EAEY +      E  W+   L +L +   
Sbjct: 1324 YVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVANTSSEMQWICSLLTELGI--R 1383

Query: 132  MHLPITLYCDNSGVVANSREPKSHKREKYIERKYHLIREIVHRGDVTVTKISSEQNMADP 191
            +  P  +YCDN G       P  H R K+I   YH IR  V  G + V  +S+   +AD 
Sbjct: 1384 LTRPPVIYCDNVGATYLCANPVFHSRMKHIAIDYHFIRNQVQSGALRVVHVSTHDQLADT 1443

Query: 192  FTKALTAKVFES 203
             TK L+   F++
Sbjct: 1444 LTKPLSRTAFQN 1453

[Close]

BLAST of Cmc04g0100701 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.0e-19
Identity = 48/107 (44.86%), Postives = 73/107 (68.22%), Query Frame = 0


Query: 13  SIGIVSRYQSNPGRDHWTAVKNILKYLRKTKDYMLVYGSKDLI-LIGYTDSDFQTDKDAT 72
           ++G++S++ S+P   HW A+K +L+YL+ T+ Y L +       L+GY+D+D+  D ++ 
Sbjct: 27  AVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEFTRAGTAKLVGYSDADWAGDVESR 86

Query: 73  KSTSGSVFTLNGGAVVWRSIKQSCVADSTMEAEYVAACKAGKEAVWL 119
           +STSG +F LNGG V WRS KQ  VA S+ E EY+A  +A +EAVWL
Sbjct: 87  RSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMALSEATQEAVWL 133

[Close]

BLAST of Cmc04g0100701 vs. ExPASy TrEMBL
Match: A0A5A7U6B9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00860 PE=4 SV=1)

HSP 1 Score: 374.4 bits (960), Expect = 3.1e-100
Identity = 182/212 (85.85%), Postives = 193/212 (91.04%), Query Frame = 0


Query: 1   MQCYVLDLTFCYSIGIVSRYQSNPGRDHWTAVKNILKYLRKTKDYMLVYGSKDLILIGYT 60
           M C + D+  CYS+GIVSRYQSNP RDHWTA+KNILKYLR+TKDYMLVYGSKDLIL GYT
Sbjct: 17  MLCIIPDI--CYSVGIVSRYQSNPVRDHWTAIKNILKYLRRTKDYMLVYGSKDLILTGYT 76

Query: 61  DSDFQTDKDATKSTSGSVFTLNGGAVVWRSIKQSCVADSTMEAEYVAACKAGKEAVWLKK 120
           DSDFQTDKD  KSTSGSVFTLNGGA+VWRSI+QSC+ DS MEAEYVA C+A KEAVWLKK
Sbjct: 77  DSDFQTDKDDRKSTSGSVFTLNGGAIVWRSIEQSCIVDSIMEAEYVATCEAAKEAVWLKK 136

Query: 121 FLIDLEVVPNMHLPITLYCDNSGVVANSREPKSHKREKYIERKYHLIREIVHRGDVTVTK 180
           FL DLEVVPNMHLPITLYCDNSG VANSREP+SHKREK IERKYHLIR+IVHRGDVTVTK
Sbjct: 137 FLTDLEVVPNMHLPITLYCDNSGAVANSREPRSHKREKNIERKYHLIRKIVHRGDVTVTK 196

Query: 181 ISSEQNMADPFTKALTAKVFESHLHGLSLRGL 213
           ISSEQNM DPFTKAL AKVFESHLHGL LRGL
Sbjct: 197 ISSEQNMTDPFTKALMAKVFESHLHGLGLRGL 226

[Close]

BLAST of Cmc04g0100701 vs. ExPASy TrEMBL
Match: A0A5A7UL66 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G002390 PE=4 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 6.6e-98
Identity = 177/202 (87.62%), Postives = 188/202 (93.07%), Query Frame = 0


Query: 11  CYSIGIVSRYQSNPGRDHWTAVKNILKYLRKTKDYMLVYGSKDLILIGYTDSDFQTDKDA 70
           CYS+G+VSRYQSNPGRDHWTAVKNILKYLR+ KDYMLVYGSKDLIL GYTDSDFQTDKDA
Sbjct: 436 CYSVGMVSRYQSNPGRDHWTAVKNILKYLRRIKDYMLVYGSKDLILTGYTDSDFQTDKDA 495

Query: 71  TKSTSGSVFTLNGGAVVWRSIKQSCVADSTMEAEYVAACKAGKEAVWLKKFLIDLEVVPN 130
            KSTSGSVFTLN GAVVWRSIKQS + DSTMEAEYVAACKA KEAVWLKKFL  LEVV N
Sbjct: 496 RKSTSGSVFTLNEGAVVWRSIKQSYIVDSTMEAEYVAACKAAKEAVWLKKFLTYLEVVLN 555

Query: 131 MHLPITLYCDNSGVVANSREPKSHKREKYIERKYHLIREIVHRGDVTVTKISSEQNMADP 190
           MH+PIT+YCDNSG +ANSREP+SHKR K+IER+YHLIREI+HRGDVTVTKISSEQNM DP
Sbjct: 556 MHMPITIYCDNSGAIANSREPRSHKRGKHIERRYHLIREIIHRGDVTVTKISSEQNMVDP 615

Query: 191 FTKALTAKVFESHLHGLSLRGL 213
           FTKALTAKVFESHLHGL LRGL
Sbjct: 616 FTKALTAKVFESHLHGLGLRGL 637

[Close]

BLAST of Cmc04g0100701 vs. ExPASy TrEMBL
Match: A0A5D3CX07 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G00070 PE=4 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 6.6e-98
Identity = 177/202 (87.62%), Postives = 188/202 (93.07%), Query Frame = 0


Query: 11  CYSIGIVSRYQSNPGRDHWTAVKNILKYLRKTKDYMLVYGSKDLILIGYTDSDFQTDKDA 70
           CYS+G+VSRYQSNPGRDHWTAVKNILKYLR+ KDYMLVYGSKDLIL GYTDSDFQTDKDA
Sbjct: 44  CYSVGMVSRYQSNPGRDHWTAVKNILKYLRRIKDYMLVYGSKDLILTGYTDSDFQTDKDA 103

Query: 71  TKSTSGSVFTLNGGAVVWRSIKQSCVADSTMEAEYVAACKAGKEAVWLKKFLIDLEVVPN 130
            KSTSGSVFTLN GAVVWRSIKQS + DSTMEAEYVAACKA KEAVWLKKFL  LEVV N
Sbjct: 104 RKSTSGSVFTLNEGAVVWRSIKQSYIVDSTMEAEYVAACKAAKEAVWLKKFLTYLEVVLN 163

Query: 131 MHLPITLYCDNSGVVANSREPKSHKREKYIERKYHLIREIVHRGDVTVTKISSEQNMADP 190
           MH+PIT+YCDNSG +ANSREP+SHKR K+IER+YHLIREI+HRGDVTVTKISSEQNM DP
Sbjct: 164 MHMPITIYCDNSGAIANSREPRSHKRGKHIERRYHLIREIIHRGDVTVTKISSEQNMVDP 223

Query: 191 FTKALTAKVFESHLHGLSLRGL 213
           FTKALTAKVFESHLHGL LRGL
Sbjct: 224 FTKALTAKVFESHLHGLGLRGL 245

[Close]

BLAST of Cmc04g0100701 vs. ExPASy TrEMBL
Match: A0A5A7V9B0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G001330 PE=4 SV=1)

HSP 1 Score: 366.3 bits (939), Expect = 8.6e-98
Identity = 177/199 (88.94%), Postives = 187/199 (93.97%), Query Frame = 0


Query: 11  CYSIGIVSRYQSNPGRDHWTAVKNILKYLRKTKDYMLVYGSKDLILIGYTDSDFQTDKDA 70
           CYSIGI+SRYQSNPGRDHWT VKNILKYLR+TKDYMLVYGSKDLIL GYTDSDFQTDKD 
Sbjct: 595 CYSIGIISRYQSNPGRDHWTTVKNILKYLRRTKDYMLVYGSKDLILTGYTDSDFQTDKDG 654

Query: 71  TKSTSGSVFTLNGGAVVWRSIKQSCVADSTMEAEYVAACKAGKEAVWLKKFLIDLEVVPN 130
            KSTSGSVFTLNGG VVWRSIKQSC+A+STMEAEYVAAC+A KEAVWLKKFLIDLEVVPN
Sbjct: 655 RKSTSGSVFTLNGGGVVWRSIKQSCIAESTMEAEYVAACEAAKEAVWLKKFLIDLEVVPN 714

Query: 131 MHLPITLYCDNSGVVANSREPKSHKREKYIERKYHLIREIVHRGDVTVTKISSEQNMADP 190
           MHL ITLYCDNS VV NSREP SHKR K+IE+KYH+IR+IVHRGDVTVTKISSEQNMADP
Sbjct: 715 MHLSITLYCDNSDVVTNSREPLSHKRGKHIEQKYHMIRKIVHRGDVTVTKISSEQNMADP 774

Query: 191 FTKALTAKVFESHLHGLSL 210
           FTKALTAKVFES+LHGL L
Sbjct: 775 FTKALTAKVFESYLHGLGL 793

[Close]

BLAST of Cmc04g0100701 vs. ExPASy TrEMBL
Match: A0A5A7SRW5 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold745G00090 PE=4 SV=1)

HSP 1 Score: 364.0 bits (933), Expect = 4.2e-97
Identity = 178/202 (88.12%), Postives = 186/202 (92.08%), Query Frame = 0


Query: 11  CYSIGIVSRYQSNPGRDHWTAVKNILKYLRKTKDYMLVYGSKDLILIGYTDSDFQTDKDA 70
           CYS+GIVSRYQSNPGRDHW AVKNILKYLRKTKDYMLVYGSKDLIL G+TDSDFQ DKDA
Sbjct: 290 CYSVGIVSRYQSNPGRDHWIAVKNILKYLRKTKDYMLVYGSKDLILTGHTDSDFQIDKDA 349

Query: 71  TKSTSGSVFTLNGGAVVWRSIKQSCVADSTMEAEYVAACKAGKEAVWLKKFLIDLEVVPN 130
            KSTSGSVFTLNGGAVVWRSIKQSC+  STMEAEYVAAC+A KEAVWLKKFL DLEVVPN
Sbjct: 350 RKSTSGSVFTLNGGAVVWRSIKQSCIVGSTMEAEYVAACEAAKEAVWLKKFLTDLEVVPN 409

Query: 131 MHLPITLYCDNSGVVANSREPKSHKREKYIERKYHLIREIVHRGDVTVTKISSEQNMADP 190
           MHL ITLYCDNSG VANSREP+SHKR K+IERKYHLIREI+H+GDV VTKISSEQNMADP
Sbjct: 410 MHLSITLYCDNSGAVANSREPRSHKRGKHIERKYHLIREILHQGDVIVTKISSEQNMADP 469

Query: 191 FTKALTAKVFESHLHGLSLRGL 213
           FTKAL AKVFESHLH L L GL
Sbjct: 470 FTKALMAKVFESHLHDLGLCGL 491

The following BLAST results are available for this feature:

BLAST of Cmc04g0100701 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051362.1	6.5e-100	85.85	gag/pol protein [Cucumis melo var. makuwa]	[more]
TYK14976.1	1.4e-97	87.62	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0054281.1	1.4e-97	87.62	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0063026.1	1.8e-97	88.94	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0032291.1	8.8e-97	88.12	gag/pol protein [Cucumis melo var. makuwa] >TYK13513.1 gag/pol protein [Cucumis ...	[more]

BLAST of Cmc04g0100701 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	4.2e-41	45.26	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	9.0e-28	37.07	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	2.7e-24	33.33	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	3.3e-22	32.29	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
P0CV72	2.0e-19	44.86	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]

BLAST of Cmc04g0100701 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U6B9	3.1e-100	85.85	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G00860...	[more]
A0A5A7UL66	6.6e-98	87.62	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold131G0023...	[more]
A0A5D3CX07	6.6e-98	87.62	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G00070...	[more]
A0A5A7V9B0	8.6e-98	88.94	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold468G0013...	[more]
A0A5A7SRW5	4.2e-97	88.12	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold745G0009...	[more]

BLAST of Cmc04g0100701 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439:SF355	CYSTEINE-RICH RLK (RECEPTOR-LIKE PROTEIN KINASE) 8	coord: 74..203
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 74..203
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 57..198 e-value: 4.18982E-64 score: 193.068

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0100701.1	Cmc04g0100701.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
cellular_component	GO:0016020	membrane
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding