Cmc04g0100651 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0100651
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	KH domain-containing protein
Location	CMiso1.1chr04: 16726303 .. 16726678 (+)
RNA-Seq Expression	Cmc04g0100651
Synteny	Cmc04g0100651

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCAGGTGATTGTTAATTAATTTATTTTCATTTTCATGTCATGATGAACTTTCTTGAATTTCATATTGCTTATGTTGTGTGGGATTAATTTTGTGGTTTTTCTAGTTAGATATATGGGAACTTGATGTTGCCAAGGAGGCTCTTGTACATATAGTGACCAAGCTTAGAGCTAACCTTTTTTATAGAGAAGACGCTCTCTTAGTCGTTTTGTTTGTTCTGTTGTATCTTCCTCTGTCAGCTGATGGTTCAAATAGTCTTAGCTACGATGGTAGAGAAGGTAAAAGACATGGGCGTGGGCATTCATATTCAAGTGGTTATGAGGGTTTCAATGATTTGGTTGGTGATGTTTATGGAAGCTACAGAGGCTTATAG

mRNA sequence

ATGGTTCAGTTAGATATATGGGAACTTGATGTTGCCAAGGAGGCTCTTGTACATATAGTGACCAAGCTTAGAGCTAACCTTTTTTATAGAGAAGACGCTCTCTTAGTCGTTTTGTTTGTTCTGTTGTATCTTCCTCTGTCAGCTGATGGTTCAAATAGTCTTAGCTACGATGGTAGAGAAGGTAAAAGACATGGGCGTGGGCATTCATATTCAAGTGGTTATGAGGGTTTCAATGATTTGGTTGGTGATGTTTATGGAAGCTACAGAGGCTTATAG

Coding sequence (CDS)

ATGGTTCAGTTAGATATATGGGAACTTGATGTTGCCAAGGAGGCTCTTGTACATATAGTGACCAAGCTTAGAGCTAACCTTTTTTATAGAGAAGACGCTCTCTTAGTCGTTTTGTTTGTTCTGTTGTATCTTCCTCTGTCAGCTGATGGTTCAAATAGTCTTAGCTACGATGGTAGAGAAGGTAAAAGACATGGGCGTGGGCATTCATATTCAAGTGGTTATGAGGGTTTCAATGATTTGGTTGGTGATGTTTATGGAAGCTACAGAGGCTTATAG

Protein sequence

MVQLDIWELDVAKEALVHIVTKLRANLFYREDALLVVLFVLLYLPLSADGSNSLSYDGREGKRHGRGHSYSSGYEGFNDLVGDVYGSYRGL

Homology

[Close]

BLAST of Cmc04g0100651 vs. NCBI nr
Match: KAA0051174.1 (KH domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 172.6 bits (436), Expect = 1.6e-39
Identity = 87/91 (95.60%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1   MVQLDIWELDVAKEALVHIVTKLRANLFYREDALLVVLFVLLYLPLSADGSNSLSYDGRE 60
           MVQLDIWELDVAKEALVHIVTKLRANLFYREDALLV+LFVLLYL LSADGSNSLSYDGRE
Sbjct: 65  MVQLDIWELDVAKEALVHIVTKLRANLFYREDALLVILFVLLYLLLSADGSNSLSYDGRE 124

Query: 61  GKRHGRGHSYSSGYEGFNDLVGDVYGSYRGL 92
           GKRHGRGHSYSSGY GFNDLVGDVYGSY+GL
Sbjct: 125 GKRHGRGHSYSSGYGGFNDLVGDVYGSYKGL 155

[Close]

BLAST of Cmc04g0100651 vs. NCBI nr
Match: XP_016900407.1 (PREDICTED: uncharacterized protein LOC107990890, partial [Cucumis melo])

HSP 1 Score: 165.2 bits (417), Expect = 2.6e-37
Identity = 85/91 (93.41%), Postives = 85/91 (93.41%), Query Frame = 0


Query: 1   MVQLDIWELDVAKEALVHIVTKLRANLFYREDALLVVLFVLLYLPLSADGSNSLSYDGRE 60
           MVQLDIWELDVAKEALVHIVTKLRANLFYREDALLVVL VLLYLPLSADGSNSLSYD RE
Sbjct: 52  MVQLDIWELDVAKEALVHIVTKLRANLFYREDALLVVLPVLLYLPLSADGSNSLSYDRRE 111

Query: 61  GKRHGRGHSYSSGYEGFNDLVGDVYGSYRGL 92
           GKRHGRGH YSSGY GFNDL GDVYGSY GL
Sbjct: 112 GKRHGRGHPYSSGYGGFNDLAGDVYGSYSGL 142

[Close]

BLAST of Cmc04g0100651 vs. NCBI nr
Match: TYK03725.1 (KH domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 165.2 bits (417), Expect = 2.6e-37
Identity = 85/91 (93.41%), Postives = 85/91 (93.41%), Query Frame = 0


Query: 1   MVQLDIWELDVAKEALVHIVTKLRANLFYREDALLVVLFVLLYLPLSADGSNSLSYDGRE 60
           MVQLDIWELDVAKEALVHIVTKLRANLFYREDALLVVL VLLYLPLSADGSNSLSYD RE
Sbjct: 88  MVQLDIWELDVAKEALVHIVTKLRANLFYREDALLVVLPVLLYLPLSADGSNSLSYDRRE 147

Query: 61  GKRHGRGHSYSSGYEGFNDLVGDVYGSYRGL 92
           GKRHGRGH YSSGY GFNDL GDVYGSY GL
Sbjct: 148 GKRHGRGHPYSSGYGGFNDLAGDVYGSYSGL 178

[Close]

BLAST of Cmc04g0100651 vs. NCBI nr
Match: XP_011655998.1 (KH domain-containing protein HEN4 [Cucumis sativus] >KAE8648927.1 hypothetical protein Csa_008610 [Cucumis sativus])

HSP 1 Score: 129.8 bits (325), Expect = 1.2e-26
Identity = 73/91 (80.22%), Postives = 77/91 (84.62%), Query Frame = 0


Query: 1   MVQLDIWELDVAKEALVHIVTKLRANLFYREDALLVVLFVLLYLPLSADGSNSLSYDGRE 60
           MVQ+   +LDVAKEALVHIVT+LRANLF RE AL  VL VL YLPLSADGS+SLSYDGRE
Sbjct: 420 MVQIS-GDLDVAKEALVHIVTRLRANLFDREGALSAVLPVLPYLPLSADGSDSLSYDGRE 479

Query: 61  GKRHGRGHSYSSGYEGFNDLV-GDVYGSYRG 91
           GKRHGRGHSYSSGY GFNDL  GD YGSY G
Sbjct: 480 GKRHGRGHSYSSGYGGFNDLAGGDGYGSYSG 509

[Close]

BLAST of Cmc04g0100651 vs. NCBI nr
Match: XP_008459330.1 (PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Cucumis melo])

HSP 1 Score: 129.4 bits (324), Expect = 1.6e-26
Identity = 72/91 (79.12%), Postives = 77/91 (84.62%), Query Frame = 0


Query: 1   MVQLDIWELDVAKEALVHIVTKLRANLFYREDALLVVLFVLLYLPLSADGSNSLSYDGRE 60
           MVQ+   +LDVAKEAL+HIVT+LRANLF RE AL  VL VL YLPLSADGS+SLSYDGRE
Sbjct: 420 MVQIS-GDLDVAKEALIHIVTRLRANLFDREGALSAVLPVLPYLPLSADGSDSLSYDGRE 479

Query: 61  GKRHGRGHSYSSGYEGFNDLV-GDVYGSYRG 91
           GKRHGRGHSYSSGY GFNDL  GD YGSY G
Sbjct: 480 GKRHGRGHSYSSGYGGFNDLAGGDGYGSYSG 509

[Close]

BLAST of Cmc04g0100651 vs. ExPASy TrEMBL
Match: A0A5A7U784 (KH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold511G001300 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 7.8e-40
Identity = 87/91 (95.60%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1   MVQLDIWELDVAKEALVHIVTKLRANLFYREDALLVVLFVLLYLPLSADGSNSLSYDGRE 60
           MVQLDIWELDVAKEALVHIVTKLRANLFYREDALLV+LFVLLYL LSADGSNSLSYDGRE
Sbjct: 65  MVQLDIWELDVAKEALVHIVTKLRANLFYREDALLVILFVLLYLLLSADGSNSLSYDGRE 124

Query: 61  GKRHGRGHSYSSGYEGFNDLVGDVYGSYRGL 92
           GKRHGRGHSYSSGY GFNDLVGDVYGSY+GL
Sbjct: 125 GKRHGRGHSYSSGYGGFNDLVGDVYGSYKGL 155

[Close]

BLAST of Cmc04g0100651 vs. ExPASy TrEMBL
Match: A0A5D3BXA0 (KH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G00970 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.2e-37
Identity = 85/91 (93.41%), Postives = 85/91 (93.41%), Query Frame = 0


Query: 1   MVQLDIWELDVAKEALVHIVTKLRANLFYREDALLVVLFVLLYLPLSADGSNSLSYDGRE 60
           MVQLDIWELDVAKEALVHIVTKLRANLFYREDALLVVL VLLYLPLSADGSNSLSYD RE
Sbjct: 88  MVQLDIWELDVAKEALVHIVTKLRANLFYREDALLVVLPVLLYLPLSADGSNSLSYDRRE 147

Query: 61  GKRHGRGHSYSSGYEGFNDLVGDVYGSYRGL 92
           GKRHGRGH YSSGY GFNDL GDVYGSY GL
Sbjct: 148 GKRHGRGHPYSSGYGGFNDLAGDVYGSYSGL 178

[Close]

BLAST of Cmc04g0100651 vs. ExPASy TrEMBL
Match: A0A1S4DWP9 (uncharacterized protein LOC107990890 OS=Cucumis melo OX=3656 GN=LOC107990890 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.2e-37
Identity = 85/91 (93.41%), Postives = 85/91 (93.41%), Query Frame = 0


Query: 1   MVQLDIWELDVAKEALVHIVTKLRANLFYREDALLVVLFVLLYLPLSADGSNSLSYDGRE 60
           MVQLDIWELDVAKEALVHIVTKLRANLFYREDALLVVL VLLYLPLSADGSNSLSYD RE
Sbjct: 52  MVQLDIWELDVAKEALVHIVTKLRANLFYREDALLVVLPVLLYLPLSADGSNSLSYDRRE 111

Query: 61  GKRHGRGHSYSSGYEGFNDLVGDVYGSYRGL 92
           GKRHGRGH YSSGY GFNDL GDVYGSY GL
Sbjct: 112 GKRHGRGHPYSSGYGGFNDLAGDVYGSYSGL 142

[Close]

BLAST of Cmc04g0100651 vs. ExPASy TrEMBL
Match: A0A0A0KVM1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636640 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 5.8e-27
Identity = 73/91 (80.22%), Postives = 77/91 (84.62%), Query Frame = 0


Query: 1   MVQLDIWELDVAKEALVHIVTKLRANLFYREDALLVVLFVLLYLPLSADGSNSLSYDGRE 60
           MVQ+   +LDVAKEALVHIVT+LRANLF RE AL  VL VL YLPLSADGS+SLSYDGRE
Sbjct: 480 MVQIS-GDLDVAKEALVHIVTRLRANLFDREGALSAVLPVLPYLPLSADGSDSLSYDGRE 539

Query: 61  GKRHGRGHSYSSGYEGFNDLV-GDVYGSYRG 91
           GKRHGRGHSYSSGY GFNDL  GD YGSY G
Sbjct: 540 GKRHGRGHSYSSGYGGFNDLAGGDGYGSYSG 569

[Close]

BLAST of Cmc04g0100651 vs. ExPASy TrEMBL
Match: A0A5A7TBQ7 (KH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold169G002780 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 7.6e-27
Identity = 72/91 (79.12%), Postives = 77/91 (84.62%), Query Frame = 0


Query: 1   MVQLDIWELDVAKEALVHIVTKLRANLFYREDALLVVLFVLLYLPLSADGSNSLSYDGRE 60
           MVQ+   +LDVAKEAL+HIVT+LRANLF RE AL  VL VL YLPLSADGS+SLSYDGRE
Sbjct: 420 MVQIS-GDLDVAKEALIHIVTRLRANLFDREGALSAVLPVLPYLPLSADGSDSLSYDGRE 479

Query: 61  GKRHGRGHSYSSGYEGFNDLV-GDVYGSYRG 91
           GKRHGRGHSYSSGY GFNDL  GD YGSY G
Sbjct: 480 GKRHGRGHSYSSGYGGFNDLAGGDGYGSYSG 509

[Close]

BLAST of Cmc04g0100651 vs. TAIR 10
Match: AT5G15270.2 (RNA-binding KH domain-containing protein )

HSP 1 Score: 64.7 bits (156), Expect = 4.4e-11
Identity = 38/88 (43.18%), Postives = 56/88 (63.64%), Query Frame = 0


Query: 1   MVQLDIWELDVAKEALVHIVTKLRANLFYREDALLVVLFVLLYLPLSADGSNSLSYDGRE 60
           MVQ+   ELDVAKEAL+ I ++LRAN+F RE A+  ++ VL Y+P++ D  +   YD R+
Sbjct: 421 MVQIS-GELDVAKEALIQITSRLRANVFDREGAVSALMPVLPYVPVAPDAGDRFDYDSRD 480

Query: 61  GKRHGRGHSYSSGYEGFNDLVGDVYGSY 89
            +R  RG+ Y  GY G + +  + Y  Y
Sbjct: 481 SRRLERGNPYPGGY-GSSGVSAEGYSPY 506

[Close]

BLAST of Cmc04g0100651 vs. TAIR 10
Match: AT5G15270.1 (RNA-binding KH domain-containing protein )

HSP 1 Score: 64.7 bits (156), Expect = 4.4e-11
Identity = 38/88 (43.18%), Postives = 56/88 (63.64%), Query Frame = 0


Query: 1   MVQLDIWELDVAKEALVHIVTKLRANLFYREDALLVVLFVLLYLPLSADGSNSLSYDGRE 60
           MVQ+   ELDVAKEAL+ I ++LRAN+F RE A+  ++ VL Y+P++ D  +   YD R+
Sbjct: 421 MVQIS-GELDVAKEALIQITSRLRANVFDREGAVSALMPVLPYVPVAPDAGDRFDYDSRD 480

Query: 61  GKRHGRGHSYSSGYEGFNDLVGDVYGSY 89
            +R  RG+ Y  GY G + +  + Y  Y
Sbjct: 481 SRRLERGNPYPGGY-GSSGVSAEGYSPY 506

The following BLAST results are available for this feature:

BLAST of Cmc04g0100651 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0051174.1	1.6e-39	95.60	KH domain-containing protein [Cucumis melo var. makuwa]	[more]
XP_016900407.1	2.6e-37	93.41	PREDICTED: uncharacterized protein LOC107990890, partial [Cucumis melo]	[more]
TYK03725.1	2.6e-37	93.41	KH domain-containing protein [Cucumis melo var. makuwa]	[more]
XP_011655998.1	1.2e-26	80.22	KH domain-containing protein HEN4 [Cucumis sativus] >KAE8648927.1 hypothetical p...	[more]
XP_008459330.1	1.6e-26	79.12	PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Cucumis melo]	[more]

BLAST of Cmc04g0100651 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Cmc04g0100651 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U784	7.8e-40	95.60	KH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5D3BXA0	1.2e-37	93.41	KH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A1S4DWP9	1.2e-37	93.41	uncharacterized protein LOC107990890 OS=Cucumis melo OX=3656 GN=LOC107990890 PE=...	[more]
A0A0A0KVM1	5.8e-27	80.22	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G636640 PE=4 SV=1	[more]
A0A5A7TBQ7	7.6e-27	79.12	KH domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]

BLAST of Cmc04g0100651 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15270.2	4.4e-11	43.18	RNA-binding KH domain-containing protein	[more]
AT5G15270.1	4.4e-11	43.18	RNA-binding KH domain-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 50..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0100651.1	Cmc04g0100651.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0016020	membrane
cellular_component	GO:1990904	ribonucleoprotein complex
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome