Cmc04g0100561 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0100561
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	CMiso1.1chr04: 16581379 .. 16581786 (+)
RNA-Seq Expression	Cmc04g0100561
Synteny	Cmc04g0100561

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTGGTAGCTCATTATAATTTAGAGCTTCATCAAATGGATGTGAAAACCGCCTTTCTAAATGGAAATTTAGATGAAGAAGTGTTCATGGATCAACCAGAAGGTTTTAGAGTTGAAGGAAAGGAACATATGGTGTGTAAATTAAAGAGGTCAATATATGGACTTAAACAAGCTTCTAGACAGTGGTATCTTAAGTTTAATGATACCATCACATCTTTTGGTTTTAAAGAAAATATCGTTGATCGATGTATATACCTAAAGATTAGTGGGAGTAAGTTTATAATTCTTGTTCTATATGTTGATGACATCTTGCTTACTACAAATGACTTTGGTTTATTATGTCAAACCAAAGAATTTCTTTCTAAAAACTTTGAAATGAAAGATGTGGTGAGGCGTCCTATGTGA

mRNA sequence

ATGGCTTTGGTAGCTCATTATAATTTAGAGCTTCATCAAATGGATGTGAAAACCGCCTTTCTAAATGGAAATTTAGATGAAGAAGTGTTCATGGATCAACCAGAAGGTTTTAGAGTTGAAGGAAAGGAACATATGGTGTGTAAATTAAAGAGGTCAATATATGGACTTAAACAAGCTTCTAGACAGTGGTATCTTAAGTTTAATGATACCATCACATCTTTTGGTTTTAAAGAAAATATCGTTGATCGATGTATATACCTAAAGATTAGTGGGAGTAAGTTTATAATTCTTGTTCTATATGTTGATGACATCTTGCTTACTACAAATGACTTTGGTTTATTATGTCAAACCAAAGAATTTCTTTCTAAAAACTTTGAAATGAAAGATGTGGTGAGGCGTCCTATGTGA

Coding sequence (CDS)

ATGGCTTTGGTAGCTCATTATAATTTAGAGCTTCATCAAATGGATGTGAAAACCGCCTTTCTAAATGGAAATTTAGATGAAGAAGTGTTCATGGATCAACCAGAAGGTTTTAGAGTTGAAGGAAAGGAACATATGGTGTGTAAATTAAAGAGGTCAATATATGGACTTAAACAAGCTTCTAGACAGTGGTATCTTAAGTTTAATGATACCATCACATCTTTTGGTTTTAAAGAAAATATCGTTGATCGATGTATATACCTAAAGATTAGTGGGAGTAAGTTTATAATTCTTGTTCTATATGTTGATGACATCTTGCTTACTACAAATGACTTTGGTTTATTATGTCAAACCAAAGAATTTCTTTCTAAAAACTTTGAAATGAAAGATGTGGTGAGGCGTCCTATGTGA

Protein sequence

MALVAHYNLELHQMDVKTAFLNGNLDEEVFMDQPEGFRVEGKEHMVCKLKRSIYGLKQASRQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLTTNDFGLLCQTKEFLSKNFEMKDVVRRPM

Homology

[Close]

BLAST of Cmc04g0100561 vs. NCBI nr
Match: KAA0052755.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 257.7 bits (657), Expect = 5.6e-65
Identity = 126/130 (96.92%), Postives = 128/130 (98.46%), Query Frame = 0


Query: 1   MALVAHYNLELHQMDVKTAFLNGNLDEEVFMDQPEGFRVEGKEHMVCKLKRSIYGLKQAS 60
           MALVAHY+LELHQMDVKTAFLNGNLDEEVFMDQPEGF VEGKEHMVCKLKRSIYGLKQAS
Sbjct: 619 MALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS 678

Query: 61  RQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLTTNDFGLLCQTKEF 120
           RQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILL TNDFGLLCQTKEF
Sbjct: 679 RQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLATNDFGLLCQTKEF 738

Query: 121 LSKNFEMKDV 131
           LSKNFEMKD+
Sbjct: 739 LSKNFEMKDM 748

[Close]

BLAST of Cmc04g0100561 vs. NCBI nr
Match: TYK04201.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 257.7 bits (657), Expect = 5.6e-65
Identity = 126/130 (96.92%), Postives = 128/130 (98.46%), Query Frame = 0


Query: 1   MALVAHYNLELHQMDVKTAFLNGNLDEEVFMDQPEGFRVEGKEHMVCKLKRSIYGLKQAS 60
           MALVAHY+LELHQMDVKTAFLNGNLDEEVFMDQPEGF VEGKEHMVCKLKRSIYGLKQAS
Sbjct: 619 MALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS 678

Query: 61  RQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLTTNDFGLLCQTKEF 120
           RQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILL TNDFGLLCQTKEF
Sbjct: 679 RQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLATNDFGLLCQTKEF 738

Query: 121 LSKNFEMKDV 131
           LSKNFEMKD+
Sbjct: 739 LSKNFEMKDM 748

[Close]

BLAST of Cmc04g0100561 vs. NCBI nr
Match: TYK00088.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 254.2 bits (648), Expect = 6.2e-64
Identity = 123/130 (94.62%), Postives = 128/130 (98.46%), Query Frame = 0


Query: 1   MALVAHYNLELHQMDVKTAFLNGNLDEEVFMDQPEGFRVEGKEHMVCKLKRSIYGLKQAS 60
           MALVAHY+LELHQMDVKTAF+NGNLDE++FMDQPEGF VEGKEHMVCKLKRSIYGLKQAS
Sbjct: 72  MALVAHYDLELHQMDVKTAFINGNLDEKLFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS 131

Query: 61  RQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLTTNDFGLLCQTKEF 120
           RQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILL TNDFGLLCQTKEF
Sbjct: 132 RQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLATNDFGLLCQTKEF 191

Query: 121 LSKNFEMKDV 131
           LSKNFEMKD+
Sbjct: 192 LSKNFEMKDM 201

[Close]

BLAST of Cmc04g0100561 vs. NCBI nr
Match: KAA0033349.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 248.8 bits (634), Expect = 2.6e-62
Identity = 123/130 (94.62%), Postives = 126/130 (96.92%), Query Frame = 0


Query: 1   MALVAHYNLELHQMDVKTAFLNGNLDEEVFMDQPEGFRVEGKEHMVCKLKRSIYGLKQAS 60
           MALVAHY+LELHQMDVKTAFLNGNLDEEVFMDQPEGF VEGKEHMVCKLKRSIYGLKQAS
Sbjct: 41  MALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS 100

Query: 61  RQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLTTNDFGLLCQTKEF 120
           RQ YLKFNDTITSFGFKENIVDRCIYLKISGSKFI+LVLYVDDILL T DFGLLCQTKEF
Sbjct: 101 RQCYLKFNDTITSFGFKENIVDRCIYLKISGSKFIVLVLYVDDILLATIDFGLLCQTKEF 160

Query: 121 LSKNFEMKDV 131
           LSKNFEMKD+
Sbjct: 161 LSKNFEMKDM 170

[Close]

BLAST of Cmc04g0100561 vs. NCBI nr
Match: RYE20331.1 (hypothetical protein EOP45_11235, partial [Sphingobacteriaceae bacterium])

HSP 1 Score: 246.5 bits (628), Expect = 1.3e-61
Identity = 120/130 (92.31%), Postives = 126/130 (96.92%), Query Frame = 0


Query: 1   MALVAHYNLELHQMDVKTAFLNGNLDEEVFMDQPEGFRVEGKEHMVCKLKRSIYGLKQAS 60
           MA+VAHY+LELHQMDVKTAFLNGNLDEEVFMDQPEGF V+GKEHMVCKLK+SIYGLKQAS
Sbjct: 61  MAMVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFVVDGKEHMVCKLKKSIYGLKQAS 120

Query: 61  RQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLTTNDFGLLCQTKEF 120
           RQWYLKFNDT+TSFGFKENIVDRCIYLKISGSKFIILVLYVDDILL TND GLL QTKEF
Sbjct: 121 RQWYLKFNDTVTSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLATNDLGLLRQTKEF 180

Query: 121 LSKNFEMKDV 131
           LSKNFEMKD+
Sbjct: 181 LSKNFEMKDM 190

[Close]

BLAST of Cmc04g0100561 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 4.8e-35
Identity = 71/131 (54.20%), Postives = 100/131 (76.34%), Query Frame = 0


Query: 1    MALVAHYNLELHQMDVKTAFLNGNLDEEVFMDQPEGFRVEGKEHMVCKLKRSIYGLKQAS 60
            ++L A  +LE+ Q+DVKTAFL+G+L+EE++M+QPEGF V GK+HMVCKL +S+YGLKQA 
Sbjct: 908  LSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQAP 967

Query: 61   RQWYLKFNDTITSFGFKENIVDRCIYLK-ISGSKFIILVLYVDDILLTTNDFGLLCQTKE 120
            RQWY+KF+  + S  + +   D C+Y K  S + FIIL+LYVDD+L+   D GL+ + K 
Sbjct: 968  RQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLKG 1027

Query: 121  FLSKNFEMKDV 131
             LSK+F+MKD+
Sbjct: 1028 DLSKSFDMKDL 1038

[Close]

BLAST of Cmc04g0100561 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 113.2 bits (282), Expect = 2.3e-24
Identity = 58/132 (43.94%), Postives = 84/132 (63.64%), Query Frame = 0


Query: 1    MALVAHYNLELHQMDVKTAFLNGNLDEEVFMDQPEGFRVEGKEHMVCKLKRSIYGLKQAS 60
            ++LV  YNL++HQMDVKTAFLNG L EE++M  P+G  +      VCKL ++IYGLKQA+
Sbjct: 988  LSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQG--ISCNSDNVCKLNKAIYGLKQAA 1047

Query: 61   RQWYLKFNDTITSFGFKENIVDRCIYLKISG--SKFIILVLYVDDILLTTNDFGLLCQTK 120
            R W+  F   +    F  + VDRCIY+   G  ++ I ++LYVDD+++ T D   +   K
Sbjct: 1048 RCWFEVFEQALKECEFVNSSVDRCIYILDKGNINENIYVLLYVDDVVIATGDMTRMNNFK 1107

Query: 121  EFLSKNFEMKDV 131
             +L + F M D+
Sbjct: 1108 RYLMEKFRMTDL 1117

[Close]

BLAST of Cmc04g0100561 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.7e-22
Identity = 48/119 (40.34%), Postives = 78/119 (65.55%), Query Frame = 0


Query: 11   LHQMDVKTAFLNGNLDEEVFMDQPEGFRVEGKEHMVCKLKRSIYGLKQASRQWYLKFNDT 70
            + Q+DV  AFL G L ++V+M QP GF  + + + VCKL++++YGLKQA R WY++  + 
Sbjct: 1061 IRQLDVNNAFLQGTLTDDVYMSQPPGFIDKDRPNYVCKLRKALYGLKQAPRAWYVELRNY 1120

Query: 71   ITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLTTNDFGLLCQTKEFLSKNFEMKD 130
            + + GF  ++ D  +++   G   + +++YVDDIL+T ND  LL  T + LS+ F +KD
Sbjct: 1121 LLTIGFVNSVSDTSLFVLQRGKSIVYMLVYVDDILITGNDPTLLHNTLDNLSQRFSVKD 1179

[Close]

BLAST of Cmc04g0100561 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.4e-21
Identity = 50/119 (42.02%), Postives = 76/119 (63.87%), Query Frame = 0


Query: 11   LHQMDVKTAFLNGNLDEEVFMDQPEGFRVEGKEHMVCKLKRSIYGLKQASRQWYLKFNDT 70
            + Q+DV  AFL G L +EV+M QP GF  + +   VC+L+++IYGLKQA R WY++    
Sbjct: 1044 IRQLDVNNAFLQGTLTDEVYMSQPPGFVDKDRPDYVCRLRKAIYGLKQAPRAWYVELRTY 1103

Query: 71   ITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLTTNDFGLLCQTKEFLSKNFEMKD 130
            + + GF  +I D  +++   G   I +++YVDDIL+T ND  LL  T + LS+ F +K+
Sbjct: 1104 LLTVGFVNSISDTSLFVLQRGRSIIYMLVYVDDILITGNDTVLLKHTLDALSQRFSVKE 1162

[Close]

BLAST of Cmc04g0100561 vs. ExPASy Swiss-Prot
Match: P25600 (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TY5A PE=5 SV=2)

HSP 1 Score: 76.3 bits (186), Expect = 3.1e-13
Identity = 41/117 (35.04%), Postives = 64/117 (54.70%), Query Frame = 0


Query: 14  MDVKTAFLNGNLDEEVFMDQPEGFRVEGKEHMVCKLKRSIYGLKQASRQWYLKFNDTITS 73
           MDV TAFLN  +DE +++ QP GF  E     V +L   +YGLKQA   W    N+T+  
Sbjct: 1   MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 74  FGFKENIVDRCIYLKISGSKFIILVLYVDDILLTTNDFGLLCQTKEFLSKNFEMKDV 131
            GF  +  +  +Y + +    I + +YVDD+L+      +  + K+ L+K + MKD+
Sbjct: 61  IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDL 117

[Close]

BLAST of Cmc04g0100561 vs. ExPASy TrEMBL
Match: A0A5A7UG95 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43055G00040 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.7e-65
Identity = 126/130 (96.92%), Postives = 128/130 (98.46%), Query Frame = 0


Query: 1   MALVAHYNLELHQMDVKTAFLNGNLDEEVFMDQPEGFRVEGKEHMVCKLKRSIYGLKQAS 60
           MALVAHY+LELHQMDVKTAFLNGNLDEEVFMDQPEGF VEGKEHMVCKLKRSIYGLKQAS
Sbjct: 619 MALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS 678

Query: 61  RQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLTTNDFGLLCQTKEF 120
           RQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILL TNDFGLLCQTKEF
Sbjct: 679 RQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLATNDFGLLCQTKEF 738

Query: 121 LSKNFEMKDV 131
           LSKNFEMKD+
Sbjct: 739 LSKNFEMKDM 748

[Close]

BLAST of Cmc04g0100561 vs. ExPASy TrEMBL
Match: A0A5D3BWW5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1856G00300 PE=4 SV=1)

HSP 1 Score: 257.7 bits (657), Expect = 2.7e-65
Identity = 126/130 (96.92%), Postives = 128/130 (98.46%), Query Frame = 0


Query: 1   MALVAHYNLELHQMDVKTAFLNGNLDEEVFMDQPEGFRVEGKEHMVCKLKRSIYGLKQAS 60
           MALVAHY+LELHQMDVKTAFLNGNLDEEVFMDQPEGF VEGKEHMVCKLKRSIYGLKQAS
Sbjct: 619 MALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS 678

Query: 61  RQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLTTNDFGLLCQTKEF 120
           RQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILL TNDFGLLCQTKEF
Sbjct: 679 RQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLATNDFGLLCQTKEF 738

Query: 121 LSKNFEMKDV 131
           LSKNFEMKD+
Sbjct: 739 LSKNFEMKDM 748

[Close]

BLAST of Cmc04g0100561 vs. ExPASy TrEMBL
Match: A0A5D3BLU0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold596G00400 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 3.0e-64
Identity = 123/130 (94.62%), Postives = 128/130 (98.46%), Query Frame = 0


Query: 1   MALVAHYNLELHQMDVKTAFLNGNLDEEVFMDQPEGFRVEGKEHMVCKLKRSIYGLKQAS 60
           MALVAHY+LELHQMDVKTAF+NGNLDE++FMDQPEGF VEGKEHMVCKLKRSIYGLKQAS
Sbjct: 72  MALVAHYDLELHQMDVKTAFINGNLDEKLFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS 131

Query: 61  RQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLTTNDFGLLCQTKEF 120
           RQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILL TNDFGLLCQTKEF
Sbjct: 132 RQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLATNDFGLLCQTKEF 191

Query: 121 LSKNFEMKDV 131
           LSKNFEMKD+
Sbjct: 192 LSKNFEMKDM 201

[Close]

BLAST of Cmc04g0100561 vs. ExPASy TrEMBL
Match: A0A5A7SVZ5 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold845G001720 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 1.3e-62
Identity = 123/130 (94.62%), Postives = 126/130 (96.92%), Query Frame = 0


Query: 1   MALVAHYNLELHQMDVKTAFLNGNLDEEVFMDQPEGFRVEGKEHMVCKLKRSIYGLKQAS 60
           MALVAHY+LELHQMDVKTAFLNGNLDEEVFMDQPEGF VEGKEHMVCKLKRSIYGLKQAS
Sbjct: 41  MALVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFMVEGKEHMVCKLKRSIYGLKQAS 100

Query: 61  RQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLTTNDFGLLCQTKEF 120
           RQ YLKFNDTITSFGFKENIVDRCIYLKISGSKFI+LVLYVDDILL T DFGLLCQTKEF
Sbjct: 101 RQCYLKFNDTITSFGFKENIVDRCIYLKISGSKFIVLVLYVDDILLATIDFGLLCQTKEF 160

Query: 121 LSKNFEMKDV 131
           LSKNFEMKD+
Sbjct: 161 LSKNFEMKDM 170

[Close]

BLAST of Cmc04g0100561 vs. ExPASy TrEMBL
Match: A0A4V1T029 (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) OS=Sphingobacteriaceae bacterium OX=2021370 GN=EOP45_11235 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 6.3e-62
Identity = 120/130 (92.31%), Postives = 126/130 (96.92%), Query Frame = 0


Query: 1   MALVAHYNLELHQMDVKTAFLNGNLDEEVFMDQPEGFRVEGKEHMVCKLKRSIYGLKQAS 60
           MA+VAHY+LELHQMDVKTAFLNGNLDEEVFMDQPEGF V+GKEHMVCKLK+SIYGLKQAS
Sbjct: 61  MAMVAHYDLELHQMDVKTAFLNGNLDEEVFMDQPEGFVVDGKEHMVCKLKKSIYGLKQAS 120

Query: 61  RQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLTTNDFGLLCQTKEF 120
           RQWYLKFNDT+TSFGFKENIVDRCIYLKISGSKFIILVLYVDDILL TND GLL QTKEF
Sbjct: 121 RQWYLKFNDTVTSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLATNDLGLLRQTKEF 180

Query: 121 LSKNFEMKDV 131
           LSKNFEMKD+
Sbjct: 181 LSKNFEMKDM 190

[Close]

BLAST of Cmc04g0100561 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 121.3 bits (303), Expect = 5.9e-28
Identity = 58/134 (43.28%), Postives = 91/134 (67.91%), Query Frame = 0


Query: 1   MALVAHYNLELHQMDVKTAFLNGNLDEEVFMDQPEGFRVEGKEHM----VCKLKRSIYGL 60
           +A+ A YN  LHQ+D+  AFLNG+LDEE++M  P G+     + +    VC LK+SIYGL
Sbjct: 180 LAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLPPGYAARQGDSLPPNAVCYLKKSIYGL 239

Query: 61  KQASRQWYLKFNDTITSFGFKENIVDRCIYLKISGSKFIILVLYVDDILLTTNDFGLLCQ 120
           KQASRQW+LKF+ T+  FGF ++  D   +LKI+ + F+ +++YVDDI++ +N+   + +
Sbjct: 240 KQASRQWFLKFSVTLIGFGFVQSHSDHTYFLKITATLFLCVLVYVDDIIICSNNDAAVDE 299

Query: 121 TKEFLSKNFEMKDV 131
            K  L   F+++D+
Sbjct: 300 LKSQLKSCFKLRDL 313

The following BLAST results are available for this feature:

BLAST of Cmc04g0100561 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0052755.1	5.6e-65	96.92	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK04201.1	5.6e-65	96.92	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK00088.1	6.2e-64	94.62	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0033349.1	2.6e-62	94.62	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
RYE20331.1	1.3e-61	92.31	hypothetical protein EOP45_11235, partial [Sphingobacteriaceae bacterium]	[more]

BLAST of Cmc04g0100561 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P10978	4.8e-35	54.20	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.3e-24	43.94	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q94HW2	4.7e-22	40.34	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	1.4e-21	42.02	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P25600	3.1e-13	35.04	Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT...	[more]

BLAST of Cmc04g0100561 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UG95	2.7e-65	96.92	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3BWW5	2.7e-65	96.92	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3BLU0	3.0e-64	94.62	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5A7SVZ5	1.3e-62	94.62	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A4V1T029	6.3e-62	92.31	Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) OS=Sph...	[more]

BLAST of Cmc04g0100561 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	5.9e-28	43.28	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 2..130 e-value: 1.0E-39 score: 136.6
None	No IPR available	PANTHER	PTHR45895	FAMILY NOT NAMED	coord: 3..130
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 10..129

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0100561.1	Cmc04g0100561.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006952	defense response
biological_process	GO:0015074	DNA integration
biological_process	GO:0006278	RNA-dependent DNA biosynthetic process
biological_process	GO:0007165	signal transduction
molecular_function	GO:0043531	ADP binding
molecular_function	GO:0003887	DNA-directed DNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003964	RNA-directed DNA polymerase activity
molecular_function	GO:0008270	zinc ion binding