Cmc04g0100391 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0100391
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Ty3/gypsy retrotransposon protein
Location	CMiso1.1chr04: 16370806 .. 16371432 (+)
RNA-Seq Expression	Cmc04g0100391
Synteny	Cmc04g0100391

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTTTGTTGTACTAAGGGATAATCAACTTTATGTCAATCACAAGAAATGTGTATTTGCTCATTCTAAAATCCAATATTTGGGACACCAAATATCCAAGCCAGTGGTGGAAGCGGATGAGGATAAAATTAGAAGTATGGTGAATTGGCCAAGACCTTCAGACGTGACAGAACTAAGAGGGTTTTTGGGACTGACCGGTTACTACCGAAGGTTTGTTCAGGGTTACAGCAATATTGCGACGCCCCTCACTAAGCTACTCCAGAAAAATGCCTTTAAATGGAATGAAGAAGCTGAAACAGCTTTCGTGAAGCTGAAGGTAGCAATGACAACTATACCGGTCTTAGCACTTCTAGATTGGAATCTGCCATTTACCATAGAAACGGACGCATCAGGCAGCGGCTTGGGGGCAGTTTTATCACAAAGAGGGCACCCCATAGCTTTTTATAGTCAGAAGCTATCGCAAAGGGCTCAAACAAAGTCGATATATGAAAGAGAATTGATGGTTGTGGTATTGTCCGTACAAAGGTGGAGGCATTATCTATTGGGAAGGAAGTTTTCGATCCTATCTAACCAGAAGGCCTTGAAGTTTTTGTTAGAACAGAGAGAAGTACAGCCCCAATTCTAG

mRNA sequence

ATGGTTTTTGTTGTACTAAGGGATAATCAACTTTATGTCAATCACAAGAAATGTGTATTTGCTCATTCTAAAATCCAATATTTGGGACACCAAATATCCAAGCCAGTGGTGGAAGCGGATGAGGATAAAATTAGAAGTATGGTGAATTGGCCAAGACCTTCAGACGTGACAGAACTAAGAGGGTTTTTGGGACTGACCGGTTACTACCGAAGGTTTGTTCAGGGTTACAGCAATATTGCGACGCCCCTCACTAAGCTACTCCAGAAAAATGCCTTTAAATGGAATGAAGAAGCTGAAACAGCTTTCGTGAAGCTGAAGGTAGCAATGACAACTATACCGGTCTTAGCACTTCTAGATTGGAATCTGCCATTTACCATAGAAACGGACGCATCAGGCAGCGGCTTGGGGGCAGTTTTATCACAAAGAGGGCACCCCATAGCTTTTTATAGTCAGAAGCTATCGCAAAGGGCTCAAACAAAGTCGATATATGAAAGAGAATTGATGGTTGTGGTATTGTCCGTACAAAGGTGGAGGCATTATCTATTGGGAAGGAAGTTTTCGATCCTATCTAACCAGAAGGCCTTGAAGTTTTTGTTAGAACAGAGAGAAGTACAGCCCCAATTCTAG

Coding sequence (CDS)

ATGGTTTTTGTTGTACTAAGGGATAATCAACTTTATGTCAATCACAAGAAATGTGTATTTGCTCATTCTAAAATCCAATATTTGGGACACCAAATATCCAAGCCAGTGGTGGAAGCGGATGAGGATAAAATTAGAAGTATGGTGAATTGGCCAAGACCTTCAGACGTGACAGAACTAAGAGGGTTTTTGGGACTGACCGGTTACTACCGAAGGTTTGTTCAGGGTTACAGCAATATTGCGACGCCCCTCACTAAGCTACTCCAGAAAAATGCCTTTAAATGGAATGAAGAAGCTGAAACAGCTTTCGTGAAGCTGAAGGTAGCAATGACAACTATACCGGTCTTAGCACTTCTAGATTGGAATCTGCCATTTACCATAGAAACGGACGCATCAGGCAGCGGCTTGGGGGCAGTTTTATCACAAAGAGGGCACCCCATAGCTTTTTATAGTCAGAAGCTATCGCAAAGGGCTCAAACAAAGTCGATATATGAAAGAGAATTGATGGTTGTGGTATTGTCCGTACAAAGGTGGAGGCATTATCTATTGGGAAGGAAGTTTTCGATCCTATCTAACCAGAAGGCCTTGAAGTTTTTGTTAGAACAGAGAGAAGTACAGCCCCAATTCTAG

Protein sequence

MVFVVLRDNQLYVNHKKCVFAHSKIQYLGHQISKPVVEADEDKIRSMVNWPRPSDVTELRGFLGLTGYYRRFVQGYSNIATPLTKLLQKNAFKWNEEAETAFVKLKVAMTTIPVLALLDWNLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQTKSIYERELMVVVLSVQRWRHYLLGRKFSILSNQKALKFLLEQREVQPQF

Homology

[Close]

BLAST of Cmc04g0100391 vs. NCBI nr
Match: KAA0034826.1 (Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 398.7 bits (1023), Expect = 3.2e-107
Identity = 201/208 (96.63%), Postives = 203/208 (97.60%), Query Frame = 0


Query: 1   MVFVVLRDNQLYVNHKKCVFAHSKIQYLGHQISKPVVEADEDKIRSMVNWPRPSDVTELR 60
           MVFVVLRDNQLYVNHKKCVFAHSKIQYLGHQISK  VEADEDKIRSMVNWPRPSDVTELR
Sbjct: 117 MVFVVLRDNQLYVNHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVTELR 176

Query: 61  GFLGLTGYYRRFVQGYSNIATPLTKLLQKNAFKWNEEAETAFVKLKVAMTTIPVLALLDW 120
           GFLGLTGYYRRFVQGYSNIAT LTKLLQKNAFKWNEEA+TAFVKLKVAMTTIPVLAL DW
Sbjct: 177 GFLGLTGYYRRFVQGYSNIATLLTKLLQKNAFKWNEEAKTAFVKLKVAMTTIPVLALPDW 236

Query: 121 NLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQTKSIYERELMVVVLSVQRWRHY 180
           NLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQTKSIYERELM VVLSVQRWRHY
Sbjct: 237 NLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQTKSIYERELMAVVLSVQRWRHY 296

Query: 181 LLGRKFSILSNQKALKFLLEQREVQPQF 209
           LLGRKFSILS+QKALKFLLEQREVQPQF
Sbjct: 297 LLGRKFSILSDQKALKFLLEQREVQPQF 324

[Close]

BLAST of Cmc04g0100391 vs. NCBI nr
Match: KAA0061073.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 393.3 bits (1009), Expect = 1.3e-105
Identity = 196/208 (94.23%), Postives = 201/208 (96.63%), Query Frame = 0


Query: 1   MVFVVLRDNQLYVNHKKCVFAHSKIQYLGHQISKPVVEADEDKIRSMVNWPRPSDVTELR 60
           MVF VLRDNQLY NHKKCVFAHSKIQYLGHQISK  VEADEDKIRSMVNWPRPSDVTELR
Sbjct: 769 MVFAVLRDNQLYANHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVTELR 828

Query: 61  GFLGLTGYYRRFVQGYSNIATPLTKLLQKNAFKWNEEAETAFVKLKVAMTTIPVLALLDW 120
           GFLGLTGYYRRFV+GYSNIATPLTKLLQKNAFKWNE+AETAFV+LKVAMTTIPVLAL DW
Sbjct: 829 GFLGLTGYYRRFVKGYSNIATPLTKLLQKNAFKWNEDAETAFVRLKVAMTTIPVLALPDW 888

Query: 121 NLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQTKSIYERELMVVVLSVQRWRHY 180
           +LPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQ KSIYERELM VVLSVQRWRHY
Sbjct: 889 SLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAVVLSVQRWRHY 948

Query: 181 LLGRKFSILSNQKALKFLLEQREVQPQF 209
           LLGRKFSILS+QKALKFLLEQREVQPQF
Sbjct: 949 LLGRKFSILSDQKALKFLLEQREVQPQF 976

[Close]

BLAST of Cmc04g0100391 vs. NCBI nr
Match: KAA0051136.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03761.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 393.3 bits (1009), Expect = 1.3e-105
Identity = 197/208 (94.71%), Postives = 199/208 (95.67%), Query Frame = 0


Query: 1   MVFVVLRDNQLYVNHKKCVFAHSKIQYLGHQISKPVVEADEDKIRSMVNWPRPSDVTELR 60
           MVF VLRDNQLY NHKKCVFAHSKIQYLGHQISK  VEADEDKIRSMVNWPRPSDV ELR
Sbjct: 738 MVFAVLRDNQLYANHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVIELR 797

Query: 61  GFLGLTGYYRRFVQGYSNIATPLTKLLQKNAFKWNEEAETAFVKLKVAMTTIPVLALLDW 120
           GFLGLTGYYRRFVQGY+NIATPLTKLLQKNAFKWNEEAETAFVKLKVAMTTIPVLAL DW
Sbjct: 798 GFLGLTGYYRRFVQGYNNIATPLTKLLQKNAFKWNEEAETAFVKLKVAMTTIPVLALPDW 857

Query: 121 NLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQTKSIYERELMVVVLSVQRWRHY 180
           NLPFT ETDASGSGLGAVL QRGHPIAFYSQKLSQRAQTKSIYERELM VVLSVQRWRHY
Sbjct: 858 NLPFTTETDASGSGLGAVLLQRGHPIAFYSQKLSQRAQTKSIYERELMAVVLSVQRWRHY 917

Query: 181 LLGRKFSILSNQKALKFLLEQREVQPQF 209
           LLGRKFSILS+QKALKFLLEQREVQPQF
Sbjct: 918 LLGRKFSILSDQKALKFLLEQREVQPQF 945

[Close]

BLAST of Cmc04g0100391 vs. NCBI nr
Match: KAA0039128.1 (Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK26985.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 390.2 bits (1001), Expect = 1.1e-104
Identity = 194/208 (93.27%), Postives = 200/208 (96.15%), Query Frame = 0


Query: 1   MVFVVLRDNQLYVNHKKCVFAHSKIQYLGHQISKPVVEADEDKIRSMVNWPRPSDVTELR 60
           MVF VLRDN LY NHKKCVFAHS+IQYLGHQISK  VEADEDKIRSMV+WPRPSDVTELR
Sbjct: 769 MVFAVLRDNHLYANHKKCVFAHSRIQYLGHQISKAGVEADEDKIRSMVDWPRPSDVTELR 828

Query: 61  GFLGLTGYYRRFVQGYSNIATPLTKLLQKNAFKWNEEAETAFVKLKVAMTTIPVLALLDW 120
           GFLGLTGYYRRFV+GYSNIATPLTKLLQKNAFKWNEEAETAFV+LKVAMTTIPVL L DW
Sbjct: 829 GFLGLTGYYRRFVKGYSNIATPLTKLLQKNAFKWNEEAETAFVRLKVAMTTIPVLTLPDW 888

Query: 121 NLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQTKSIYERELMVVVLSVQRWRHY 180
           NLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQ+AQ KSIYERELMVVVLSVQRWRHY
Sbjct: 889 NLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQKAQAKSIYERELMVVVLSVQRWRHY 948

Query: 181 LLGRKFSILSNQKALKFLLEQREVQPQF 209
           LLGRKFSILS+QKALKFLLEQREVQPQF
Sbjct: 949 LLGRKFSILSDQKALKFLLEQREVQPQF 976

[Close]

BLAST of Cmc04g0100391 vs. NCBI nr
Match: KAA0048168.1 (uncharacterized protein E6C27_scaffold63G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 389.8 bits (1000), Expect = 1.5e-104
Identity = 194/208 (93.27%), Postives = 200/208 (96.15%), Query Frame = 0


Query: 1   MVFVVLRDNQLYVNHKKCVFAHSKIQYLGHQISKPVVEADEDKIRSMVNWPRPSDVTELR 60
           MVF VLRDNQLY NHKKCVFAHS+IQYLGHQISK  VEADEDKIRSMVNWPRPSDV ELR
Sbjct: 378 MVFAVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVIELR 437

Query: 61  GFLGLTGYYRRFVQGYSNIATPLTKLLQKNAFKWNEEAETAFVKLKVAMTTIPVLALLDW 120
           GFLGLTGYYRRFV+GYSNIATPLTKLLQKNAFKWNEEAETAFV+LKVAMTTIPVLAL DW
Sbjct: 438 GFLGLTGYYRRFVKGYSNIATPLTKLLQKNAFKWNEEAETAFVRLKVAMTTIPVLALPDW 497

Query: 121 NLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQTKSIYERELMVVVLSVQRWRHY 180
           +LPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQ KSIYERELM V+LSVQRWRHY
Sbjct: 498 SLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAVLLSVQRWRHY 557

Query: 181 LLGRKFSILSNQKALKFLLEQREVQPQF 209
           LLGRKFSILS+QKALKFLLEQREVQPQF
Sbjct: 558 LLGRKFSILSDQKALKFLLEQREVQPQF 585

[Close]

BLAST of Cmc04g0100391 vs. ExPASy Swiss-Prot
Match: P20825 (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 5.2e-36
Identity = 81/205 (39.51%), Postives = 125/205 (60.98%), Query Frame = 0


Query: 1   MVFVVLRDNQLYVNHKKCVFAHSKIQYLGHQISKPVVEADEDKIRSMVNWPRPSDVTELR 60
           +VF  L D  L +   KC F   +  +LGH ++   ++ +  K++++V++P P+   E+R
Sbjct: 383 LVFTKLADANLKLQLDKCEFLKKEANFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIR 442

Query: 61  GFLGLTGYYRRFVQGYSNIATPLTKLLQKNAFKWNEEAE--TAFVKLKVAMTTIPVLALL 120
            FLGLTGYYR+F+  Y++IA P+T  L+K      ++ E   AF KLK  +   P+L L 
Sbjct: 443 AFLGLTGYYRKFIPNYADIAKPMTSCLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLP 502

Query: 121 DWNLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQTKSIYERELMVVVLSVQRWR 180
           D+   F + TDAS   LGAVLSQ GHPI+F S+ L+      S  E+EL+ +V + + +R
Sbjct: 503 DFEKKFVLTTDASNLALGAVLSQNGHPISFISRTLNDHELNYSAIEKELLAIVWATKTFR 562

Query: 181 HYLLGRKFSILSNQKALKFLLEQRE 204
           HYLLGR+F I S+ + L++L   +E
Sbjct: 563 HYLLGRQFLIASDHQPLRWLHNLKE 587

[Close]

BLAST of Cmc04g0100391 vs. ExPASy Swiss-Prot
Match: P04323 (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 2.6e-35
Identity = 78/205 (38.05%), Postives = 126/205 (61.46%), Query Frame = 0


Query: 1   MVFVVLRDNQLYVNHKKCVFAHSKIQYLGHQISKPVVEADEDKIRSMVNWPRPSDVTELR 60
           +VF  L    L +   KC F   +  +LGH ++   ++ + +KI ++  +P P+   E++
Sbjct: 384 LVFEKLAKANLKLQLDKCEFLKQETTFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIK 443

Query: 61  GFLGLTGYYRRFVQGYSNIATPLTKLLQKN--AFKWNEEAETAFVKLKVAMTTIPVLALL 120
            FLGLTGYYR+F+  +++IA P+TK L+KN      N E ++AF KLK  ++  P+L + 
Sbjct: 444 AFLGLTGYYRKFIPNFADIAKPMTKCLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVP 503

Query: 121 DWNLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQTKSIYERELMVVVLSVQRWR 180
           D+   FT+ TDAS   LGAVLSQ GHP+++ S+ L++     S  E+EL+ +V + + +R
Sbjct: 504 DFTKKFTLTTDASDVALGAVLSQDGHPLSYISRTLNEHEINYSTIEKELLAIVWATKTFR 563

Query: 181 HYLLGRKFSILSNQKALKFLLEQRE 204
           HYLLGR F I S+ + L +L   ++
Sbjct: 564 HYLLGRHFEISSDHQPLSWLYRMKD 588

[Close]

BLAST of Cmc04g0100391 vs. ExPASy Swiss-Prot
Match: P92523 (Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 GN=AtMg00860 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 7.0e-33
Identity = 71/126 (56.35%), Postives = 84/126 (66.67%), Query Frame = 0


Query: 1   MVFVVLRDNQLYVNHKKCVFAHSKIQYLGHQ--ISKPVVEADEDKIRSMVNWPRPSDVTE 60
           MV  +   +Q Y N KKC F   +I YLGH+  IS   V AD  K+ +MV WP P + TE
Sbjct: 6   MVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTE 65

Query: 61  LRGFLGLTGYYRRFVQGYSNIATPLTKLLQKNAFKWNEEAETAFVKLKVAMTTIPVLALL 120
           LRGFLGLTGYYRRFV+ Y  I  PLT+LL+KN+ KW E A  AF  LK A+TT+PVLAL 
Sbjct: 66  LRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLPVLALP 125

Query: 121 DWNLPF 125
           D  LPF
Sbjct: 126 DLKLPF 131

[Close]

BLAST of Cmc04g0100391 vs. ExPASy Swiss-Prot
Match: Q9UR07 (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 9.8e-27
Identity = 64/198 (32.32%), Postives = 111/198 (56.06%), Query Frame = 0


Query: 6   LRDNQLYVNHKKCVFAHSKIQYLGHQISKPVVEADEDKIRSMVNWPRPSDVTELRGFLGL 65
           L++  L +N  KC F  S+++++G+ IS+      ++ I  ++ W +P +  ELR FLG 
Sbjct: 589 LKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGS 648

Query: 66  TGYYRRFVQGYSNIATPLTKLLQKNA-FKWNEEAETAFVKLKVAMTTIPVLALLDWNLPF 125
             Y R+F+   S +  PL  LL+K+  +KW      A   +K  + + PVL   D++   
Sbjct: 649 VNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKI 708

Query: 126 TIETDASGSGLGAVLSQRG-----HPIAFYSQKLSQRAQTKSIYERELMVVVLSVQRWRH 185
            +ETDAS   +GAVLSQ+      +P+ +YS K+S+     S+ ++E++ ++ S++ WRH
Sbjct: 709 LLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRH 768

Query: 186 YLLG--RKFSILSNQKAL 196
           YL      F IL++ + L
Sbjct: 769 YLESTIEPFKILTDHRNL 786

[Close]

BLAST of Cmc04g0100391 vs. ExPASy Swiss-Prot
Match: P0CT41 (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 9.8e-27
Identity = 64/198 (32.32%), Postives = 111/198 (56.06%), Query Frame = 0


Query: 6   LRDNQLYVNHKKCVFAHSKIQYLGHQISKPVVEADEDKIRSMVNWPRPSDVTELRGFLGL 65
           L++  L +N  KC F  S+++++G+ IS+      ++ I  ++ W +P +  ELR FLG 
Sbjct: 589 LKNANLIINQAKCEFHQSQVKFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGS 648

Query: 66  TGYYRRFVQGYSNIATPLTKLLQKNA-FKWNEEAETAFVKLKVAMTTIPVLALLDWNLPF 125
             Y R+F+   S +  PL  LL+K+  +KW      A   +K  + + PVL   D++   
Sbjct: 649 VNYLRKFIPKTSQLTHPLNNLLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKI 708

Query: 126 TIETDASGSGLGAVLSQRG-----HPIAFYSQKLSQRAQTKSIYERELMVVVLSVQRWRH 185
            +ETDAS   +GAVLSQ+      +P+ +YS K+S+     S+ ++E++ ++ S++ WRH
Sbjct: 709 LLETDASDVAVGAVLSQKHDDDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRH 768

Query: 186 YLLG--RKFSILSNQKAL 196
           YL      F IL++ + L
Sbjct: 769 YLESTIEPFKILTDHRNL 786

[Close]

BLAST of Cmc04g0100391 vs. ExPASy TrEMBL
Match: A0A5A7SY68 (Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold213G00630 PE=4 SV=1)

HSP 1 Score: 398.7 bits (1023), Expect = 1.5e-107
Identity = 201/208 (96.63%), Postives = 203/208 (97.60%), Query Frame = 0


Query: 1   MVFVVLRDNQLYVNHKKCVFAHSKIQYLGHQISKPVVEADEDKIRSMVNWPRPSDVTELR 60
           MVFVVLRDNQLYVNHKKCVFAHSKIQYLGHQISK  VEADEDKIRSMVNWPRPSDVTELR
Sbjct: 117 MVFVVLRDNQLYVNHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVTELR 176

Query: 61  GFLGLTGYYRRFVQGYSNIATPLTKLLQKNAFKWNEEAETAFVKLKVAMTTIPVLALLDW 120
           GFLGLTGYYRRFVQGYSNIAT LTKLLQKNAFKWNEEA+TAFVKLKVAMTTIPVLAL DW
Sbjct: 177 GFLGLTGYYRRFVQGYSNIATLLTKLLQKNAFKWNEEAKTAFVKLKVAMTTIPVLALPDW 236

Query: 121 NLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQTKSIYERELMVVVLSVQRWRHY 180
           NLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQTKSIYERELM VVLSVQRWRHY
Sbjct: 237 NLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQTKSIYERELMAVVLSVQRWRHY 296

Query: 181 LLGRKFSILSNQKALKFLLEQREVQPQF 209
           LLGRKFSILS+QKALKFLLEQREVQPQF
Sbjct: 297 LLGRKFSILSDQKALKFLLEQREVQPQF 324

[Close]

BLAST of Cmc04g0100391 vs. ExPASy TrEMBL
Match: A0A5D3BVL1 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001440 PE=4 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 6.4e-106
Identity = 197/208 (94.71%), Postives = 199/208 (95.67%), Query Frame = 0


Query: 1   MVFVVLRDNQLYVNHKKCVFAHSKIQYLGHQISKPVVEADEDKIRSMVNWPRPSDVTELR 60
           MVF VLRDNQLY NHKKCVFAHSKIQYLGHQISK  VEADEDKIRSMVNWPRPSDV ELR
Sbjct: 738 MVFAVLRDNQLYANHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVIELR 797

Query: 61  GFLGLTGYYRRFVQGYSNIATPLTKLLQKNAFKWNEEAETAFVKLKVAMTTIPVLALLDW 120
           GFLGLTGYYRRFVQGY+NIATPLTKLLQKNAFKWNEEAETAFVKLKVAMTTIPVLAL DW
Sbjct: 798 GFLGLTGYYRRFVQGYNNIATPLTKLLQKNAFKWNEEAETAFVKLKVAMTTIPVLALPDW 857

Query: 121 NLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQTKSIYERELMVVVLSVQRWRHY 180
           NLPFT ETDASGSGLGAVL QRGHPIAFYSQKLSQRAQTKSIYERELM VVLSVQRWRHY
Sbjct: 858 NLPFTTETDASGSGLGAVLLQRGHPIAFYSQKLSQRAQTKSIYERELMAVVLSVQRWRHY 917

Query: 181 LLGRKFSILSNQKALKFLLEQREVQPQF 209
           LLGRKFSILS+QKALKFLLEQREVQPQF
Sbjct: 918 LLGRKFSILSDQKALKFLLEQREVQPQF 945

[Close]

BLAST of Cmc04g0100391 vs. ExPASy TrEMBL
Match: A0A5A7UYM1 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold501G002110 PE=4 SV=1)

HSP 1 Score: 393.3 bits (1009), Expect = 6.4e-106
Identity = 196/208 (94.23%), Postives = 201/208 (96.63%), Query Frame = 0


Query: 1   MVFVVLRDNQLYVNHKKCVFAHSKIQYLGHQISKPVVEADEDKIRSMVNWPRPSDVTELR 60
           MVF VLRDNQLY NHKKCVFAHSKIQYLGHQISK  VEADEDKIRSMVNWPRPSDVTELR
Sbjct: 769 MVFAVLRDNQLYANHKKCVFAHSKIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVTELR 828

Query: 61  GFLGLTGYYRRFVQGYSNIATPLTKLLQKNAFKWNEEAETAFVKLKVAMTTIPVLALLDW 120
           GFLGLTGYYRRFV+GYSNIATPLTKLLQKNAFKWNE+AETAFV+LKVAMTTIPVLAL DW
Sbjct: 829 GFLGLTGYYRRFVKGYSNIATPLTKLLQKNAFKWNEDAETAFVRLKVAMTTIPVLALPDW 888

Query: 121 NLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQTKSIYERELMVVVLSVQRWRHY 180
           +LPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQ KSIYERELM VVLSVQRWRHY
Sbjct: 889 SLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAVVLSVQRWRHY 948

Query: 181 LLGRKFSILSNQKALKFLLEQREVQPQF 209
           LLGRKFSILS+QKALKFLLEQREVQPQF
Sbjct: 949 LLGRKFSILSDQKALKFLLEQREVQPQF 976

[Close]

BLAST of Cmc04g0100391 vs. ExPASy TrEMBL
Match: A0A5A7T8C0 (Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold322G00570 PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 5.4e-105
Identity = 194/208 (93.27%), Postives = 200/208 (96.15%), Query Frame = 0


Query: 1   MVFVVLRDNQLYVNHKKCVFAHSKIQYLGHQISKPVVEADEDKIRSMVNWPRPSDVTELR 60
           MVF VLRDN LY NHKKCVFAHS+IQYLGHQISK  VEADEDKIRSMV+WPRPSDVTELR
Sbjct: 769 MVFAVLRDNHLYANHKKCVFAHSRIQYLGHQISKAGVEADEDKIRSMVDWPRPSDVTELR 828

Query: 61  GFLGLTGYYRRFVQGYSNIATPLTKLLQKNAFKWNEEAETAFVKLKVAMTTIPVLALLDW 120
           GFLGLTGYYRRFV+GYSNIATPLTKLLQKNAFKWNEEAETAFV+LKVAMTTIPVL L DW
Sbjct: 829 GFLGLTGYYRRFVKGYSNIATPLTKLLQKNAFKWNEEAETAFVRLKVAMTTIPVLTLPDW 888

Query: 121 NLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQTKSIYERELMVVVLSVQRWRHY 180
           NLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQ+AQ KSIYERELMVVVLSVQRWRHY
Sbjct: 889 NLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQKAQAKSIYERELMVVVLSVQRWRHY 948

Query: 181 LLGRKFSILSNQKALKFLLEQREVQPQF 209
           LLGRKFSILS+QKALKFLLEQREVQPQF
Sbjct: 949 LLGRKFSILSDQKALKFLLEQREVQPQF 976

[Close]

BLAST of Cmc04g0100391 vs. ExPASy TrEMBL
Match: A0A5A7TYW6 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G00690 PE=4 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 7.1e-105
Identity = 194/208 (93.27%), Postives = 200/208 (96.15%), Query Frame = 0


Query: 1   MVFVVLRDNQLYVNHKKCVFAHSKIQYLGHQISKPVVEADEDKIRSMVNWPRPSDVTELR 60
           MVF VLRDNQLY NHKKCVFAHS+IQYLGHQISK  VEADEDKIRSMVNWPRPSDV ELR
Sbjct: 378 MVFAVLRDNQLYANHKKCVFAHSRIQYLGHQISKAGVEADEDKIRSMVNWPRPSDVIELR 437

Query: 61  GFLGLTGYYRRFVQGYSNIATPLTKLLQKNAFKWNEEAETAFVKLKVAMTTIPVLALLDW 120
           GFLGLTGYYRRFV+GYSNIATPLTKLLQKNAFKWNEEAETAFV+LKVAMTTIPVLAL DW
Sbjct: 438 GFLGLTGYYRRFVKGYSNIATPLTKLLQKNAFKWNEEAETAFVRLKVAMTTIPVLALPDW 497

Query: 121 NLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQTKSIYERELMVVVLSVQRWRHY 180
           +LPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQ KSIYERELM V+LSVQRWRHY
Sbjct: 498 SLPFTIETDASGSGLGAVLSQRGHPIAFYSQKLSQRAQAKSIYERELMAVLLSVQRWRHY 557

Query: 181 LLGRKFSILSNQKALKFLLEQREVQPQF 209
           LLGRKFSILS+QKALKFLLEQREVQPQF
Sbjct: 558 LLGRKFSILSDQKALKFLLEQREVQPQF 585

[Close]

BLAST of Cmc04g0100391 vs. TAIR 10
Match: ATMG00860.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 142.1 bits (357), Expect = 5.0e-34
Identity = 71/126 (56.35%), Postives = 84/126 (66.67%), Query Frame = 0


Query: 1   MVFVVLRDNQLYVNHKKCVFAHSKIQYLGHQ--ISKPVVEADEDKIRSMVNWPRPSDVTE 60
           MV  +   +Q Y N KKC F   +I YLGH+  IS   V AD  K+ +MV WP P + TE
Sbjct: 6   MVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTE 65

Query: 61  LRGFLGLTGYYRRFVQGYSNIATPLTKLLQKNAFKWNEEAETAFVKLKVAMTTIPVLALL 120
           LRGFLGLTGYYRRFV+ Y  I  PLT+LL+KN+ KW E A  AF  LK A+TT+PVLAL 
Sbjct: 66  LRGFLGLTGYYRRFVKNYGKIVRPLTELLKKNSLKWTEMAALAFKALKGAVTTLPVLALP 125

Query: 121 DWNLPF 125
           D  LPF
Sbjct: 126 DLKLPF 131

The following BLAST results are available for this feature:

BLAST of Cmc04g0100391 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0034826.1	3.2e-107	96.63	Transposon Ty3-G Gag-Pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0061073.1	1.3e-105	94.23	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0051136.1	1.3e-105	94.71	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK03761.1 Ty3/gyp...	[more]
KAA0039128.1	1.1e-104	93.27	Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK26985.1 Ty3/gyp...	[more]
KAA0048168.1	1.5e-104	93.27	uncharacterized protein E6C27_scaffold63G00690 [Cucumis melo var. makuwa]	[more]

BLAST of Cmc04g0100391 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P20825	5.2e-36	39.51	Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste...	[more]
P04323	2.6e-35	38.05	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast...	[more]
P92523	7.0e-33	56.35	Uncharacterized mitochondrial protein AtMg00860 OS=Arabidopsis thaliana OX=3702 ...	[more]
Q9UR07	9.8e-27	32.32	Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]
P0CT41	9.8e-27	32.32	Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24...	[more]

BLAST of Cmc04g0100391 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SY68	1.5e-107	96.63	Transposon Ty3-G Gag-Pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3BVL1	6.4e-106	94.71	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7UYM1	6.4e-106	94.23	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2...	[more]
A0A5A7T8C0	5.4e-105	93.27	Ty3/gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A5A7TYW6	7.1e-105	93.27	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]

BLAST of Cmc04g0100391 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00860.1	5.0e-34	56.35	DNA/RNA polymerases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 41..130 e-value: 2.2E-28 score: 100.1
IPR043128	Reverse transcriptase/Diguanylate cyclase domain	GENE3D	3.30.70.270		coord: 1..35 e-value: 1.4E-7 score: 33.3
IPR041577	Reverse transcriptase/retrotransposon-derived protein, RNase H-like domain	PFAM	PF17919	RT_RNaseH_2	coord: 94..188 e-value: 1.6E-30 score: 105.1
None	No IPR available	PANTHER	PTHR24559	TRANSPOSON TY3-I GAG-POL POLYPROTEIN	coord: 6..200
None	No IPR available	PANTHER	PTHR24559:SF324	TRANSPOSON TY3-I GAG-POL POLYPROTEIN-LIKE PROTEIN	coord: 6..200
None	No IPR available	CDD	cd09274	RNase_HI_RT_Ty3	coord: 125..203 e-value: 5.5105E-31 score: 107.964
IPR043502	DNA/RNA polymerase superfamily	SUPERFAMILY	56672	DNA/RNA polymerases	coord: 2..203

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0100391.1	Cmc04g0100391.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding