Cmc04g0099981 (gene) Melon (Charmono) v1.1

Overview


Name	Cmc04g0099981
Type	gene
Organism	Cucumis melo L. var. cantalupensis cv. Charmono (Melon (Charmono) v1.1)
Description	Mediator of RNA polymerase II transcription subunit 6
Location	CMiso1.1chr04: 15838939 .. 15842493 (-)
RNA-Seq Expression	Cmc04g0099981
Synteny	Cmc04g0099981

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTAGGTTGCGATACAAATTCAACCCATACCGTGGAGGTTGAGATGTTTTTGCTACATGACTTCTCCCTCTTCGCTCTCGGTCGTGATCGTCGGGAAACAAAGAAAAAGGGTGTAGTGCTTTCACTGACGGCGGAGGGATCTGTAAAATTCAACACTTCGTGCCCAGAAAAGTAAAATAGCCCACAAATGGCAACTCCACCACCACCGACGACGGCCCCGCCAGGGACCGGGAATTTCGAGGGGGGGCCGATGCCAGCAGCGCCTCAGCCTCCAGGCACGGACATGACTGGAATTTGCTTTAGAGACCAGCTTTGGCTCAATACTTACCCTCTTGATCGAAACTTGGTTTTCGATTACTTCGCCTTGTCGCCTTTCTACGACTGGACTTGTAACAACGAACAACTCAGAATGCGCTCCATTCACCCCCTCGATCTTTCTCAACTCTCGTATGATTTCTCCTCTTCTATTTTTTTTTTTTTTATTTCTATTGACAGGGTTTCGTTTTCTCTATTAATTGATTTCTTCGTCTAATTGATTGTATGTATCTTAAATATTTTTCCCCCCATACTTGGATAATTCAACCTTGTTCTTCATCTGTTCTTGTTTTATTAAGATTTCCAAAATTTGTGAATTGTAACCCTAGGATTCAGTTTCATTTAGGCATTACCATGATGGGTAATCTTATGTTCAACAGAAAAATGACAGGCATAGAGTACATGCTGAATGAAGTTATGGAGCCTCATCTTTTCGTTTTCAGAAAGCAAAAGAGGGATGGTCCTGAGAAAGTCACACCGATGCTGACTTATTATATCTTGGATGGTTCAATCTACCAGGCGCCTCAACTTTGCAATGTTTTTGCTGCCCGAGTTGTGAGATTGGCATACTTATCTTTCTTTGTCACTGTCATTTGTTTGATGCAATCTTAGTTTTTCTTCTTTTTTTCCTCATAATTGTGGCATTTGGATCATTTCTTAGTTCCATTTAGTAAATTATCGTGTTGGGTAACATCTCTTCGACTGGAAATTTAATTGCTGGATTCCTTTTTTCTTCTTTGTTTTGAAATTAATGTAGAATTTGTTTAAACCTGTAAGGCTATTATGTTTTCTGCTTCTTTCTTCCTCTGTTTTTTTGTAATCTTACATTAAGTCTTCATCATACTGCAGAGTCGGGCACTGTATTACATATCAAAGGCCTTCACCACGGCTTCCTCAAAGTTGGAGAAGATAGGATATGGTATCTTCTAGCTATTGGTGATATATTTTTCGCTCTTACTATTTTAAGTTATAGTTAAAAGATACTCACCAATGACTTTACACCTCACGGTTCTGCTATCTTAACACACGTTTTTTAAGTTTATTTAAGCCATACTAATTTAGAGATTATCTTGAAGAGTTTCGCTTTGAAAGAATTCTTTGAGCTCTTCAAGATTAATAGTTGGTTCTTTATTTTGAGATCACTTAGGCCCCGTTTGGTAATTATTTCGTTTTTTATTTTTAATTTTTGATAATTAAATGTATTTCCCCCCTTTTCTTACAATTTTGCATCTTTCTTAAATACAATGGTTGAACTCTTAGCCAAATTCCAAAAACAAATAATTTTTTAAAAGCTCCTTTTTAATTTTCAATATTTGACTTGGTTTTTAAAACCACTGGTATTGTGTAGATAACAAAGGATGAAAGTTGGAGGTAGAAATAGTGTTTATAGGCTCAGTTTTCAAAAAGAAAAACCAAAAACAAAATGGTTACTGTTAGGACTTTTCCTAAGAAGAACAAGATCTCAATTTACTGAATTATATCTGTGAAGAAATAAAAGATGATCCAAGAATAAAGGAACTTGTGAACCTTCCTCTTGAGTATTCTTACCCTAGCCCTAGATCACTCCACAAAATAACCTCCCTTCATTCACTCATCCTCTTGCTATTTATACAACATGCAGTAGAACTTTCCATTGAAAGACCATTATACCCCTTAATACTAACACACTAATATTCTTATCTAGGTATCTAACAGTCACCAAACGGGGCCTTGGCCTTAGTGTTTTGTTTTCTCTTGTTTTATTTGATTTGGATTGTTTCAGTTTTCTGCGTAGATCTTACACTTTGTTAAAGGGTTTGTTATTTTCTTTTTATATTTTTGTATCTTGAGCATTAACACAAAAAACTAAGAAAGACCAACTTTTGATGCTTTCAGGCTTTAGATAGTTGATATTTATAGCACCCCAATAGGCTTTATGAATGTTCTTTTTTATTCAGATTTCATTCTGAAATCAAATTTTGGGTCTTATATGGAATAGTTCATTCGCATATGAAATGTAGAATAAACTTTAAAGACACCATGCAGCACATTGCCTAATTGCCTATCAAACTGTTTTCTCATTTCTGGTTCAGTTGATTCTGAAAATGAGAGTGAAGAAGTAAAACCTGCAAAAGAAACCATTAACTTTAAGGAAGTTAAGCGAGTTGATCATATTCTTGCATCTTTACAGCGCAAGGTAACTTTTTTCGACATCTTATATTGACATATTCTGCATAAGGTTCATCTTTACTGTAACAGAAAATCATGTTGTGTTTGTGTATAAATTGCAAAGAGCTAATTTATCTATTAAGAAGAAAGTGGTGAGAATTTGTATGCAGTTTTCCAATAAGTTATTATTGCATTTCATTTAATAGCAACAAAACTTTTTTGAAGTCTCATCAGTTTACTTAAGTTTCGAACAATATTACCAAACCTAATTTGTACTCTCGAACCACTTACCTGACTCATTCTGACTGGAGAACTAATGACTTAGGCTTCAAATGTGTCCAAATTCAAATATATTGTACCTGTAATTAATTGAAATTAGTTCAATTGAACTTGTAAAACATTTAAATTATCTAAGACGATAAACTGCTGGTCTAGTATACAAATGATTTTATGTACGTCCATATTAATGATTTATATTTTCCATATTGAAGATTTGGCTGGTCATTTTTGCCTATCCTAATTAAGAGAATTTTTCTTGTTAAAAATTACAGCTGCCACCTGCCCCACCACCCCCACCATTTCCTGAAGGTTATGCTTCTGCTCCCACAGCAGATACAGAAAAAGGCCCTGAAAATCAGCAAGGAGAGTCACAACAGCCTTCAGCAGATCCCATTATTGATCAGGGTCCAGCTAAAAGGATGAAATTTTGAAGAGTTTAGGCTACTTTGCCTGTTGAGAAGCCTATTTAATCCTGCAATTGAAATTCAATATGGATGACATCCCTGCACAAAGCATGGTGAGTTGTGACCCCCCCCCCCCCCCCAAAAAAAAAAGAAGAAAAGGACAAAAAGTTGGAATCTGCCTTGTGAAAAGCCTGTAGTTTTAGACTTAACTTGAGCTAATCCATTGTTTTAGCAGTAACTTGTACTACACTACCATGTAACCATCACTTCCTGATTTCGTTAGCTAGAATTGTTCGATACTCATATGACATACCACTAGTTGCTGTATCTTTGTATCGTGATAACTTGGGAAGAAGATTTTTAATATCGAACATGGTAATACAATTCCGCAATATCTTGGGCTAGAGACT

mRNA sequence

TTAGGTTGCGATACAAATTCAACCCATACCGTGGAGGTTGAGATGTTTTTGCTACATGACTTCTCCCTCTTCGCTCTCGGTCGTGATCGTCGGGAAACAAAGAAAAAGGGTGTAGTGCTTTCACTGACGGCGGAGGGATCTGTAAAATTCAACACTTCGTGCCCAGAAAAGTAAAATAGCCCACAAATGGCAACTCCACCACCACCGACGACGGCCCCGCCAGGGACCGGGAATTTCGAGGGGGGGCCGATGCCAGCAGCGCCTCAGCCTCCAGGCACGGACATGACTGGAATTTGCTTTAGAGACCAGCTTTGGCTCAATACTTACCCTCTTGATCGAAACTTGGTTTTCGATTACTTCGCCTTGTCGCCTTTCTACGACTGGACTTGTAACAACGAACAACTCAGAATGCGCTCCATTCACCCCCTCGATCTTTCTCAACTCTCAAAAATGACAGGCATAGAGTACATGCTGAATGAAGTTATGGAGCCTCATCTTTTCGTTTTCAGAAAGCAAAAGAGGGATGGTCCTGAGAAAGTCACACCGATGCTGACTTATTATATCTTGGATGGTTCAATCTACCAGGCGCCTCAACTTTGCAATGTTTTTGCTGCCCGAGTTAGTCGGGCACTGTATTACATATCAAAGGCCTTCACCACGGCTTCCTCAAAGTTGGAGAAGATAGGATATGTTGATTCTGAAAATGAGAGTGAAGAAGTAAAACCTGCAAAAGAAACCATTAACTTTAAGGAAGTTAAGCGAGTTGATCATATTCTTGCATCTTTACAGCGCAAGCTGCCACCTGCCCCACCACCCCCACCATTTCCTGAAGGTTATGCTTCTGCTCCCACAGCAGATACAGAAAAAGGCCCTGAAAATCAGCAAGGAGAGTCACAACAGCCTTCAGCAGATCCCATTATTGATCAGGGTCCAGCTAAAAGGATGAAATTTTGAAGAGTTTAGGCTACTTTGCCTGTTGAGAAGCCTATTTAATCCTGCAATTGAAATTCAATATGGATGACATCCCTGCACAAAGCATGGTGAGTTGTGACCCCCCCCCCCCCCCCAAAAAAAAAAGAAGAAAAGGACAAAAAGTTGGAATCTGCCTTGTGAAAAGCCTGTAGTTTTAGACTTAACTTGAGCTAATCCATTGTTTTAGCAGTAACTTGTACTACACTACCATGTAACCATCACTTCCTGATTTCGTTAGCTAGAATTGTTCGATACTCATATGACATACCACTAGTTGCTGTATCTTTGTATCGTGATAACTTGGGAAGAAGATTTTTAATATCGAACATGGTAATACAATTCCGCAATATCTTGGGCTAGAGACT

Coding sequence (CDS)

ATGGCAACTCCACCACCACCGACGACGGCCCCGCCAGGGACCGGGAATTTCGAGGGGGGGCCGATGCCAGCAGCGCCTCAGCCTCCAGGCACGGACATGACTGGAATTTGCTTTAGAGACCAGCTTTGGCTCAATACTTACCCTCTTGATCGAAACTTGGTTTTCGATTACTTCGCCTTGTCGCCTTTCTACGACTGGACTTGTAACAACGAACAACTCAGAATGCGCTCCATTCACCCCCTCGATCTTTCTCAACTCTCAAAAATGACAGGCATAGAGTACATGCTGAATGAAGTTATGGAGCCTCATCTTTTCGTTTTCAGAAAGCAAAAGAGGGATGGTCCTGAGAAAGTCACACCGATGCTGACTTATTATATCTTGGATGGTTCAATCTACCAGGCGCCTCAACTTTGCAATGTTTTTGCTGCCCGAGTTAGTCGGGCACTGTATTACATATCAAAGGCCTTCACCACGGCTTCCTCAAAGTTGGAGAAGATAGGATATGTTGATTCTGAAAATGAGAGTGAAGAAGTAAAACCTGCAAAAGAAACCATTAACTTTAAGGAAGTTAAGCGAGTTGATCATATTCTTGCATCTTTACAGCGCAAGCTGCCACCTGCCCCACCACCCCCACCATTTCCTGAAGGTTATGCTTCTGCTCCCACAGCAGATACAGAAAAAGGCCCTGAAAATCAGCAAGGAGAGTCACAACAGCCTTCAGCAGATCCCATTATTGATCAGGGTCCAGCTAAAAGGATGAAATTTTGA

Protein sequence

MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKPAKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYASAPTADTEKGPENQQGESQQPSADPIIDQGPAKRMKF

Homology

[Close]

BLAST of Cmc04g0099981 vs. NCBI nr
Match: XP_008447572.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 6 isoform X1 [Cucumis melo] >KAA0050863.1 mediator of RNA polymerase II transcription subunit 6 isoform X1 [Cucumis melo var. makuwa] >TYK08489.1 mediator of RNA polymerase II transcription subunit 6 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 513.5 bits (1321), Expect = 1.1e-141
Identity = 254/255 (99.61%), Postives = 254/255 (99.61%), Query Frame = 0


Query: 1   MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60
           MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL
Sbjct: 1   MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60

Query: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120
           SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP
Sbjct: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120

Query: 121 MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 180
           MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP
Sbjct: 121 MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 180

Query: 181 AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYASAPTADTEKGPENQQGESQQPS 240
           AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYA APTADTEKGPENQQGESQQPS
Sbjct: 181 AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPS 240

Query: 241 ADPIIDQGPAKRMKF 256
           ADPIIDQGPAKRMKF
Sbjct: 241 ADPIIDQGPAKRMKF 255

[Close]

BLAST of Cmc04g0099981 vs. NCBI nr
Match: XP_004149176.2 (mediator of RNA polymerase II transcription subunit 6 [Cucumis sativus] >KGN58013.1 hypothetical protein Csa_011693 [Cucumis sativus])

HSP 1 Score: 499.2 bits (1284), Expect = 2.1e-137
Identity = 249/255 (97.65%), Postives = 252/255 (98.82%), Query Frame = 0


Query: 1   MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60
           MATPPPP TAPPGTGNFEGGP+PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL
Sbjct: 1   MATPPPP-TAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60

Query: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120
           SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP
Sbjct: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120

Query: 121 MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 180
           MLTYYILDGSIYQAPQLC+VFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP
Sbjct: 121 MLTYYILDGSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 180

Query: 181 AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYASAPTADTEKGPENQQGESQQPS 240
           AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYA A TA+TEKGPENQQGESQQPS
Sbjct: 181 AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAATAETEKGPENQQGESQQPS 240

Query: 241 ADPIIDQGPAKRMKF 256
           ADPIIDQGPAKRMKF
Sbjct: 241 ADPIIDQGPAKRMKF 254

[Close]

BLAST of Cmc04g0099981 vs. NCBI nr
Match: XP_038896808.1 (mediator of RNA polymerase II transcription subunit 6 [Benincasa hispida])

HSP 1 Score: 493.4 bits (1269), Expect = 1.2e-135
Identity = 246/255 (96.47%), Postives = 248/255 (97.25%), Query Frame = 0


Query: 1   MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60
           MATPPPP TAPPG GNFEGGP+PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL
Sbjct: 1   MATPPPP-TAPPGIGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60

Query: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120
           SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP
Sbjct: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120

Query: 121 MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 180
           MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENE EEVKP
Sbjct: 121 MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENEGEEVKP 180

Query: 181 AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYASAPTADTEKGPENQQGESQQPS 240
           AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYA APTA+TEKGPEN  GESQQP 
Sbjct: 181 AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAPTAETEKGPENPLGESQQPP 240

Query: 241 ADPIIDQGPAKRMKF 256
           ADPIIDQGPAKRMKF
Sbjct: 241 ADPIIDQGPAKRMKF 254

[Close]

BLAST of Cmc04g0099981 vs. NCBI nr
Match: XP_022148297.1 (mediator of RNA polymerase II transcription subunit 6 [Momordica charantia])

HSP 1 Score: 482.3 bits (1240), Expect = 2.7e-132
Identity = 241/255 (94.51%), Postives = 242/255 (94.90%), Query Frame = 0


Query: 1   MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60
           MATPPPP  APPG  NFEGGP PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL
Sbjct: 1   MATPPPP-AAPPGIANFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60

Query: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120
           SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTG EYMLNEVMEPHLFVFRKQKRDGPEKVTP
Sbjct: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120

Query: 121 MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 180
           MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP
Sbjct: 121 MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 180

Query: 181 AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYASAPTADTEKGPENQQGESQQPS 240
            KETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGY  APTA+ EKGPENQ  E QQPS
Sbjct: 181 GKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYVPAPTAEVEKGPENQPAELQQPS 240

Query: 241 ADPIIDQGPAKRMKF 256
           ADPIIDQGPAKRMKF
Sbjct: 241 ADPIIDQGPAKRMKF 254

[Close]

BLAST of Cmc04g0099981 vs. NCBI nr
Match: XP_023524903.1 (mediator of RNA polymerase II transcription subunit 6 [Cucurbita pepo subsp. pepo] >XP_023524905.1 mediator of RNA polymerase II transcription subunit 6 [Cucurbita pepo subsp. pepo] >KAG7036453.1 Mediator of RNA polymerase II transcription subunit 6 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 472.6 bits (1215), Expect = 2.1e-129
Identity = 236/255 (92.55%), Postives = 241/255 (94.51%), Query Frame = 0


Query: 1   MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60
           MATPP     PPG GNFEGGP PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL
Sbjct: 1   MATPP-----PPGIGNFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60

Query: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120
           SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP
Sbjct: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120

Query: 121 MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 180
           MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP
Sbjct: 121 MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 180

Query: 181 AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYASAPTADTEKGPENQQGESQQPS 240
           AK TI+FKEVKRVD ILASLQRKLPPAPPPPPFPEGY  AP ++ EKGPE+QQGE QQP+
Sbjct: 181 AKGTIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPA 240

Query: 241 ADPIIDQGPAKRMKF 256
           ADPIIDQGPAKRMKF
Sbjct: 241 ADPIIDQGPAKRMKF 250

[Close]

BLAST of Cmc04g0099981 vs. ExPASy Swiss-Prot
Match: F4IXJ7 (Mediator of RNA polymerase II transcription subunit 6 OS=Arabidopsis thaliana OX=3702 GN=MED6 PE=1 SV=1)

HSP 1 Score: 319.3 bits (817), Expect = 3.9e-86
Identity = 177/290 (61.03%), Postives = 196/290 (67.59%), Query Frame = 0


Query: 9   TAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTC 68
           TA    GN     +P   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD TC
Sbjct: 10  TADTFNGN-AADQIPPPLQPPGTDMTGISFRDQLWINSYPLDRNYIFDYFALSPFYDTTC 69

Query: 69  NNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILD 128
           NNE LR RSIHPLDLS LSKMTG+EYML +  EP+LFVFRKQKRDGPEKVTPMLTYYILD
Sbjct: 70  NNEILRRRSIHPLDLSHLSKMTGLEYMLTDATEPNLFVFRKQKRDGPEKVTPMLTYYILD 129

Query: 129 GSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKI---------------------- 188
           GSIYQAPQLC+VFAARVSR +Y ISKAFT A+SKLE I                      
Sbjct: 130 GSIYQAPQLCSVFAARVSRTIYNISKAFTDAASKLETIRQDLQVCLVAIVLSLSVNLGSY 189

Query: 189 ---------------GY------VDSENESEEVKPAKETINFKEVKRVDHILASLQRKLP 248
                          G+       +++NE  E KPA ET++ KE+KRVD IL SL RKL 
Sbjct: 190 FLLIFKLMANGEQVYGFNKFLFDTENQNEPAESKPASETVDLKEMKRVDVILTSLYRKLA 249

Query: 249 PAPPPPPFPEGYASAPTADTEKGPENQQGESQQPSADPIIDQGPAKRMKF 256
           P PPPPPFPEGY S      ++    Q GESQ P  DPIIDQGPAKRMKF
Sbjct: 250 PPPPPPPFPEGYVSQEALGEKEELGTQGGESQPPQVDPIIDQGPAKRMKF 298

[Close]

BLAST of Cmc04g0099981 vs. ExPASy Swiss-Prot
Match: Q54PN3 (Putative mediator of RNA polymerase II transcription subunit 6 OS=Dictyostelium discoideum OX=44689 GN=med6 PE=3 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 4.9e-28
Identity = 76/191 (39.79%), Postives = 111/191 (58.12%), Query Frame = 0


Query: 32  DMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTG 91
           D+T + +RD LWL  YPL+   +  YF+ S FYD  CNNEQL+M+    LDLS L  M G
Sbjct: 65  DLTQVMWRDPLWLQMYPLNPQTILQYFSYSQFYDKNCNNEQLKMQR---LDLSALKNMDG 124

Query: 92  IEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYY 151
           +EY L + +EP  F+  KQ R  P  V     YY+++G+IYQAP+L  VF +RVS+++ +
Sbjct: 125 LEYELIKFVEPSFFLIAKQTRISPTDVLINTLYYVINGNIYQAPELHVVFKSRVSQSISH 184

Query: 152 ISKAFTTASSKLE---KIGY---VDSENESEEVK-PAKETINFKEVKRVDHILASLQRKL 211
           +S+AF + SS +      GY   +D  N+ E+ K  A      ++ KR+D ++ SL  K 
Sbjct: 185 LSEAFNSISSIVNWDIVNGYSLNLDPSNQQEKSKLAAYSRKQIEDTKRLDQLINSLFIKF 244

Query: 212 PPAPPPPPFPE 216
           P    P   P+
Sbjct: 245 PAINRPVENPQ 252

[Close]

BLAST of Cmc04g0099981 vs. ExPASy Swiss-Prot
Match: Q921D4 (Mediator of RNA polymerase II transcription subunit 6 OS=Mus musculus OX=10090 GN=Med6 PE=1 SV=2)

HSP 1 Score: 108.6 bits (270), Expect = 1.0e-22
Identity = 86/243 (35.39%), Postives = 123/243 (50.62%), Query Frame = 0


Query: 32  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKM 91
           ++ GI + D  W+    L+   V DYF+   +PFYD TCNNE ++M+    L L  L++M
Sbjct: 9   NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 68

Query: 92  TGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRAL 151
            GIEY+L    EP LF+ RKQ+R  P +V P+  YYI+ G IYQAP L +V  +RV  A+
Sbjct: 69  VGIEYILLHAQEPILFIIRKQQRQSPAQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 128

Query: 152 YYISKAFTTASSKLE---KIGY---VDSENESEEVKP----AKETINFKEVKRVDHILAS 211
           + I  AF  A S        GY        E E+VKP     +E  +  + +RVD +L  
Sbjct: 129 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQEKVKPKAKRKEEPSSIFQRQRVDALLID 188

Query: 212 LQRKLPP-------APPPPPFPEGYASA-PTADTEKGPENQQGESQQPSADPIIDQGPAK 255
           L++K PP          P P  +    A P  +T K  E +  ++ Q +        P K
Sbjct: 189 LRQKFPPRFVQQKSGEKPVPVDQAKKEAEPLPETVKSEEKESTKNIQQTVS--TKGPPEK 244

[Close]

BLAST of Cmc04g0099981 vs. ExPASy Swiss-Prot
Match: Q3SZY9 (Mediator of RNA polymerase II transcription subunit 6 OS=Bos taurus OX=9913 GN=MED6 PE=2 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 4.0e-22
Identity = 83/243 (34.16%), Postives = 122/243 (50.21%), Query Frame = 0


Query: 32  DMTGICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKM 91
           ++ GI + D  W+    L+   V DYF+   +PFYD TCNNE ++M+    L L  L++M
Sbjct: 9   NLLGISWVDSSWIPI--LNSGSVLDYFSERSNPFYDRTCNNEVVKMQR---LTLEHLNQM 68

Query: 92  TGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRAL 151
            G+EY+L    EP LF+ RKQ+R  P +V P+  YYI+ G IYQAP L +V  +RV  A+
Sbjct: 69  VGVEYILLHAQEPILFIIRKQQRQSPTQVIPLADYYIIAGVIYQAPDLGSVINSRVLTAV 128

Query: 152 YYISKAFTTASSKLE---KIGY---VDSENESEEVKP----AKETINFKEVKRVDHILAS 211
           + I  AF  A S        GY        E ++VKP     +E  +  + +RVD +L  
Sbjct: 129 HGIQSAFDEAMSYCRYHPSKGYWWHFKDHEEQDKVKPKVKRKEEPSSIFQRQRVDALLLD 188

Query: 212 LQRKLPP--------APPPPPFPEGYASAPTADTEKGPENQQGESQQPSADPIIDQGPAK 255
           L++K PP          P P       + P  +T K  E +  ++ Q +        P K
Sbjct: 189 LRQKFPPKFVQQKSGEKPVPVDQTKKEAEPLPETVKSEEKETAKNVQQTVG--TKGPPEK 244

[Close]

BLAST of Cmc04g0099981 vs. ExPASy Swiss-Prot
Match: Q7Q107 (Mediator of RNA polymerase II transcription subunit 6 OS=Anopheles gambiae OX=7165 GN=MED6 PE=3 SV=3)

HSP 1 Score: 105.9 bits (263), Expect = 6.8e-22
Identity = 80/235 (34.04%), Postives = 118/235 (50.21%), Query Frame = 0


Query: 36  ICFRDQLWLNTYPLDRNLVFDYFA--LSPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIE 95
           I + D  W+    L+   V DYF+   +PFYD TCNNE +RM+      L  L+ MTG+E
Sbjct: 19  ISWHDSNWIPV--LNPGNVMDYFSEKSNPFYDRTCNNEIVRMQR---QSLELLNNMTGVE 78

Query: 96  YMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILDGSIYQAPQLCNVFAARVSRALYYIS 155
           Y+   V +P L+V RKQ R  P + TPM  YYI+ G++YQAP L +VF +R+   ++++ 
Sbjct: 79  YIPLHVQDPILYVIRKQHRHSPTEATPMADYYIIAGTVYQAPDLASVFNSRILSTVHHLQ 138

Query: 156 KAFTTASS--------------KLEKIGYVDSENESEEVKPAK-ETINFKEVKRVDHILA 215
            AF  ASS                 K     ++ ++++  P K E  +  + +RVD +L 
Sbjct: 139 TAFDEASSYSRYHPSKGYSWDFSSNKAIAEKTKTQTKKEAPVKEEPSSIFQRQRVDMLLG 198

Query: 216 SLQRKLP-PAPPPPPFPEGYASAPTADTEKGPENQQGESQQPSAD-PIIDQGPAK 252
            L RK P P P     P G   + TA+         G+S    AD  +I Q P +
Sbjct: 199 DLLRKFPLPLPQMTNNPTGGNPSDTANASNNHGGAAGDSDHVGADATLIKQEPTE 248

[Close]

BLAST of Cmc04g0099981 vs. ExPASy TrEMBL
Match: A0A5D3CDR8 (Mediator of RNA polymerase II transcription subunit 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G00160 PE=3 SV=1)

HSP 1 Score: 513.5 bits (1321), Expect = 5.2e-142
Identity = 254/255 (99.61%), Postives = 254/255 (99.61%), Query Frame = 0


Query: 1   MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60
           MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL
Sbjct: 1   MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60

Query: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120
           SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP
Sbjct: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120

Query: 121 MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 180
           MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP
Sbjct: 121 MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 180

Query: 181 AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYASAPTADTEKGPENQQGESQQPS 240
           AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYA APTADTEKGPENQQGESQQPS
Sbjct: 181 AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPS 240

Query: 241 ADPIIDQGPAKRMKF 256
           ADPIIDQGPAKRMKF
Sbjct: 241 ADPIIDQGPAKRMKF 255

[Close]

BLAST of Cmc04g0099981 vs. ExPASy TrEMBL
Match: A0A1S3BHR9 (Mediator of RNA polymerase II transcription subunit 6 OS=Cucumis melo OX=3656 GN=LOC103489986 PE=3 SV=1)

HSP 1 Score: 513.5 bits (1321), Expect = 5.2e-142
Identity = 254/255 (99.61%), Postives = 254/255 (99.61%), Query Frame = 0


Query: 1   MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60
           MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL
Sbjct: 1   MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60

Query: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120
           SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP
Sbjct: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120

Query: 121 MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 180
           MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP
Sbjct: 121 MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 180

Query: 181 AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYASAPTADTEKGPENQQGESQQPS 240
           AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYA APTADTEKGPENQQGESQQPS
Sbjct: 181 AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAPTADTEKGPENQQGESQQPS 240

Query: 241 ADPIIDQGPAKRMKF 256
           ADPIIDQGPAKRMKF
Sbjct: 241 ADPIIDQGPAKRMKF 255

[Close]

BLAST of Cmc04g0099981 vs. ExPASy TrEMBL
Match: A0A0A0L8C2 (Mediator of RNA polymerase II transcription subunit 6 OS=Cucumis sativus OX=3659 GN=Csa_3G434940 PE=3 SV=1)

HSP 1 Score: 499.2 bits (1284), Expect = 1.0e-137
Identity = 249/255 (97.65%), Postives = 252/255 (98.82%), Query Frame = 0


Query: 1   MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60
           MATPPPP TAPPGTGNFEGGP+PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL
Sbjct: 1   MATPPPP-TAPPGTGNFEGGPLPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60

Query: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120
           SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP
Sbjct: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120

Query: 121 MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 180
           MLTYYILDGSIYQAPQLC+VFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP
Sbjct: 121 MLTYYILDGSIYQAPQLCSVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 180

Query: 181 AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYASAPTADTEKGPENQQGESQQPS 240
           AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYA A TA+TEKGPENQQGESQQPS
Sbjct: 181 AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYAPAATAETEKGPENQQGESQQPS 240

Query: 241 ADPIIDQGPAKRMKF 256
           ADPIIDQGPAKRMKF
Sbjct: 241 ADPIIDQGPAKRMKF 254

[Close]

BLAST of Cmc04g0099981 vs. ExPASy TrEMBL
Match: A0A6J1D4P7 (Mediator of RNA polymerase II transcription subunit 6 OS=Momordica charantia OX=3673 GN=LOC111016983 PE=3 SV=1)

HSP 1 Score: 482.3 bits (1240), Expect = 1.3e-132
Identity = 241/255 (94.51%), Postives = 242/255 (94.90%), Query Frame = 0


Query: 1   MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60
           MATPPPP  APPG  NFEGGP PAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL
Sbjct: 1   MATPPPP-AAPPGIANFEGGPPPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60

Query: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120
           SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTG EYMLNEVMEPHLFVFRKQKRDGPEKVTP
Sbjct: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGTEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120

Query: 121 MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 180
           MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP
Sbjct: 121 MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 180

Query: 181 AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYASAPTADTEKGPENQQGESQQPS 240
            KETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGY  APTA+ EKGPENQ  E QQPS
Sbjct: 181 GKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYVPAPTAEVEKGPENQPAELQQPS 240

Query: 241 ADPIIDQGPAKRMKF 256
           ADPIIDQGPAKRMKF
Sbjct: 241 ADPIIDQGPAKRMKF 254

[Close]

BLAST of Cmc04g0099981 vs. ExPASy TrEMBL
Match: A0A6J1G911 (Mediator of RNA polymerase II transcription subunit 6 OS=Cucurbita moschata OX=3662 GN=LOC111452031 PE=3 SV=1)

HSP 1 Score: 471.5 bits (1212), Expect = 2.3e-129
Identity = 236/255 (92.55%), Postives = 241/255 (94.51%), Query Frame = 0


Query: 1   MATPPPPTTAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60
           MATPP     PPG GNFEGGP  AAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL
Sbjct: 1   MATPP-----PPGIGNFEGGPPLAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFAL 60

Query: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120
           SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP
Sbjct: 61  SPFYDWTCNNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTP 120

Query: 121 MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 180
           MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP
Sbjct: 121 MLTYYILDGSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESEEVKP 180

Query: 181 AKETINFKEVKRVDHILASLQRKLPPAPPPPPFPEGYASAPTADTEKGPENQQGESQQPS 240
           AKETI+FKEVKRVD ILASLQRKLPPAPPPPPFPEGY  AP ++ EKGPE+QQGE QQP+
Sbjct: 181 AKETIDFKEVKRVDRILASLQRKLPPAPPPPPFPEGYVPAPASEAEKGPESQQGELQQPA 240

Query: 241 ADPIIDQGPAKRMKF 256
           ADPIIDQGPAKRMKF
Sbjct: 241 ADPIIDQGPAKRMKF 250

[Close]

BLAST of Cmc04g0099981 vs. TAIR 10
Match: AT3G21350.1 (RNA polymerase transcriptional regulation mediator-related )

HSP 1 Score: 340.9 bits (873), Expect = 8.9e-94
Identity = 179/249 (71.89%), Postives = 197/249 (79.12%), Query Frame = 0


Query: 9   TAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTC 68
           TA    GN     +P   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD TC
Sbjct: 10  TADTFNGN-AADQIPPPLQPPGTDMTGISFRDQLWINSYPLDRNYIFDYFALSPFYDTTC 69

Query: 69  NNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILD 128
           NNE LR RSIHPLDLS LSKMTG+EYML +  EP+LFVFRKQKRDGPEKVTPMLTYYILD
Sbjct: 70  NNEILRRRSIHPLDLSHLSKMTGLEYMLTDATEPNLFVFRKQKRDGPEKVTPMLTYYILD 129

Query: 129 GSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKIGYVDSENESE--EVKPAKETIN 188
           GSIYQAPQLC+VFAARVSR +Y ISKAFT A+SKLE I  VD+EN++E  E KPA ET++
Sbjct: 130 GSIYQAPQLCSVFAARVSRTIYNISKAFTDAASKLETIRQVDTENQNEPAESKPASETVD 189

Query: 189 FKEVKRVDHILASLQRKLPPAPPPPPFPEGYASAPTADTEKGPENQQGESQQPSADPIID 248
            KE+KRVD IL SL RKL P PPPPPFPEGY S      ++    Q GESQ P  DPIID
Sbjct: 190 LKEMKRVDVILTSLYRKLAPPPPPPPFPEGYVSQEALGEKEELGTQGGESQPPQVDPIID 249

Query: 249 QGPAKRMKF 256
           QGPAKRMKF
Sbjct: 250 QGPAKRMKF 257

[Close]

BLAST of Cmc04g0099981 vs. TAIR 10
Match: AT3G21350.2 (RNA polymerase transcriptional regulation mediator-related )

HSP 1 Score: 319.3 bits (817), Expect = 2.8e-87
Identity = 177/290 (61.03%), Postives = 196/290 (67.59%), Query Frame = 0


Query: 9   TAPPGTGNFEGGPMPAAPQPPGTDMTGICFRDQLWLNTYPLDRNLVFDYFALSPFYDWTC 68
           TA    GN     +P   QPPGTDMTGI FRDQLW+N+YPLDRN +FDYFALSPFYD TC
Sbjct: 10  TADTFNGN-AADQIPPPLQPPGTDMTGISFRDQLWINSYPLDRNYIFDYFALSPFYDTTC 69

Query: 69  NNEQLRMRSIHPLDLSQLSKMTGIEYMLNEVMEPHLFVFRKQKRDGPEKVTPMLTYYILD 128
           NNE LR RSIHPLDLS LSKMTG+EYML +  EP+LFVFRKQKRDGPEKVTPMLTYYILD
Sbjct: 70  NNEILRRRSIHPLDLSHLSKMTGLEYMLTDATEPNLFVFRKQKRDGPEKVTPMLTYYILD 129

Query: 129 GSIYQAPQLCNVFAARVSRALYYISKAFTTASSKLEKI---------------------- 188
           GSIYQAPQLC+VFAARVSR +Y ISKAFT A+SKLE I                      
Sbjct: 130 GSIYQAPQLCSVFAARVSRTIYNISKAFTDAASKLETIRQDLQVCLVAIVLSLSVNLGSY 189

Query: 189 ---------------GY------VDSENESEEVKPAKETINFKEVKRVDHILASLQRKLP 248
                          G+       +++NE  E KPA ET++ KE+KRVD IL SL RKL 
Sbjct: 190 FLLIFKLMANGEQVYGFNKFLFDTENQNEPAESKPASETVDLKEMKRVDVILTSLYRKLA 249

Query: 249 PAPPPPPFPEGYASAPTADTEKGPENQQGESQQPSADPIIDQGPAKRMKF 256
           P PPPPPFPEGY S      ++    Q GESQ P  DPIIDQGPAKRMKF
Sbjct: 250 PPPPPPPFPEGYVSQEALGEKEELGTQGGESQPPQVDPIIDQGPAKRMKF 298

The following BLAST results are available for this feature:

BLAST of Cmc04g0099981 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447572.1	1.1e-141	99.61	PREDICTED: mediator of RNA polymerase II transcription subunit 6 isoform X1 [Cuc...	[more]
XP_004149176.2	2.1e-137	97.65	mediator of RNA polymerase II transcription subunit 6 [Cucumis sativus] >KGN5801...	[more]
XP_038896808.1	1.2e-135	96.47	mediator of RNA polymerase II transcription subunit 6 [Benincasa hispida]	[more]
XP_022148297.1	2.7e-132	94.51	mediator of RNA polymerase II transcription subunit 6 [Momordica charantia]	[more]
XP_023524903.1	2.1e-129	92.55	mediator of RNA polymerase II transcription subunit 6 [Cucurbita pepo subsp. pep...	[more]

BLAST of Cmc04g0099981 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4IXJ7	3.9e-86	61.03	Mediator of RNA polymerase II transcription subunit 6 OS=Arabidopsis thaliana OX...	[more]
Q54PN3	4.9e-28	39.79	Putative mediator of RNA polymerase II transcription subunit 6 OS=Dictyostelium ...	[more]
Q921D4	1.0e-22	35.39	Mediator of RNA polymerase II transcription subunit 6 OS=Mus musculus OX=10090 G...	[more]
Q3SZY9	4.0e-22	34.16	Mediator of RNA polymerase II transcription subunit 6 OS=Bos taurus OX=9913 GN=M...	[more]
Q7Q107	6.8e-22	34.04	Mediator of RNA polymerase II transcription subunit 6 OS=Anopheles gambiae OX=71...	[more]

BLAST of Cmc04g0099981 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CDR8	5.2e-142	99.61	Mediator of RNA polymerase II transcription subunit 6 OS=Cucumis melo var. makuw...	[more]
A0A1S3BHR9	5.2e-142	99.61	Mediator of RNA polymerase II transcription subunit 6 OS=Cucumis melo OX=3656 GN...	[more]
A0A0A0L8C2	1.0e-137	97.65	Mediator of RNA polymerase II transcription subunit 6 OS=Cucumis sativus OX=3659...	[more]
A0A6J1D4P7	1.3e-132	94.51	Mediator of RNA polymerase II transcription subunit 6 OS=Momordica charantia OX=...	[more]
A0A6J1G911	2.3e-129	92.55	Mediator of RNA polymerase II transcription subunit 6 OS=Cucurbita moschata OX=3...	[more]

BLAST of Cmc04g0099981 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G21350.1	8.9e-94	71.89	RNA polymerase transcriptional regulation mediator-related	[more]
AT3G21350.2	2.8e-87	61.03	RNA polymerase transcriptional regulation mediator-related	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Charmono) v1.1
Date Performed: 2022-10-13


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016820	Mediator complex, subunit Med6, metazoa/plant	PIRSF	PIRSF023869	MED6_meta/plant	coord: 21..255 e-value: 3.9E-88 score: 292.8
IPR007018	Mediator complex, subunit Med6	PFAM	PF04934	Med6	coord: 36..161 e-value: 7.9E-41 score: 138.9
IPR007018	Mediator complex, subunit Med6	PANTHER	PTHR13104	MED-6-RELATED	coord: 20..255
IPR038566	Mediator complex, subunit Med6 superfamily	GENE3D	3.10.450.580	Mediator complex, subunit Med6	coord: 30..159 e-value: 2.4E-44 score: 152.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 199..255
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 225..243
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 203..217
None	No IPR available	PANTHER	PTHR13104:SF2	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 6	coord: 20..255

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cmc04g0099981.1	Cmc04g0099981.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0070847	core mediator complex
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003713	transcription coactivator activity
molecular_function	GO:0003712	transcription coregulator activity